>RR30_SPIOL (P19954) Plastid-specific 30S ribosomal protein 1, chloroplast|
           precursor (CS-S5) (CS5) (S22) (Ribosomal protein 1)
           (PSRP-1)
          Length = 302

 Score =  160 bits (404), Expect = 3e-39
 Identities = 85/181 (46%), Positives = 109/181 (60%), Gaps = 1/181 (0%)
 Frame = +2

Query: 29  RQHIEDKVGRAVSNHAHLVREVDVRLSARGGDLSKGPKLSRCEVTLFTRRHGVVRXXXXX 208
           R H+EDKVG++V+ H+HLVREVDVRLSARGGDLSKGPKL RCEVTLFT+RHGV+R     
Sbjct: 91  RSHVEDKVGKSVAKHSHLVREVDVRLSARGGDLSKGPKLRRCEVTLFTKRHGVIRAEEDA 150

Query: 209 XXXXXXXXXXXXXXXXXXXXXXEKETD-VRHLKGTKEWQAADADATGFFXXXXXXXXXXX 385
                                 +K +D  RH+KG    +  D +                
Sbjct: 151 ESLYSSIDLVSSIIQRKLRKIKDKVSDHGRHMKGFNRSKVRDPEPV----RITREEVLEE 206

Query: 386 XXXXXXXIGAEDEETVLTKVVRTKVFEMAPLTVDEALEQLENVDHDFYSFRNEQTGEVNX 565
                  +  ED++  + +VVRTK F+M PLT+ EA+EQLENVDHDFY+FRNE+TG++N 
Sbjct: 207 VESAPAPVSVEDDD-FIEEVVRTKYFDMPPLTITEAVEQLENVDHDFYAFRNEETGDINI 265

Query: 566 L 568
           L
Sbjct: 266 L 266

>LRTA_SYNY3 (P74518) Light repressed protein A homolog|
          Length = 191

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 1/179 (0%)
 Frame = +2

Query: 35  HIEDKVGRAVSNHAHLVREVDVRLS-ARGGDLSKGPKLSRCEVTLFTRRHGVVRXXXXXX 211
           ++E+KV RAV +  +L  +VDV LS AR   ++   K    EVT++     V+R      
Sbjct: 19  YVEEKVERAVKHFQNLTTKVDVHLSVARNARITNKHK---AEVTVYANGT-VIRAQEGSE 74

Query: 212 XXXXXXXXXXXXXXXXXXXXXEKETDVRHLKGTKEWQAADADATGFFXXXXXXXXXXXXX 391
                                E+  D +H  G  +      D                  
Sbjct: 75  NLYASIDLVADKIARQLRKYKERIQDKQH--GNVKTSEIVEDKP---------------- 116

Query: 392 XXXXXIGAEDEETVLTKVVRTKVFEMAPLTVDEALEQLENVDHDFYSFRNEQTGEVNXL 568
                IG    E + ++V+R K F M P+ +++ALEQL+ VDHDFY FRN+ T E+N +
Sbjct: 117 VEENLIGDRAPE-LPSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFRNKDTDEINVI 174

>LRTA_SYNP2 (P47908) Light repressed protein A|
          Length = 192

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 24/44 (54%), Positives = 33/44 (75%)
 Frame = +2

Query: 437 TKVVRTKVFEMAPLTVDEALEQLENVDHDFYSFRNEQTGEVNXL 568
           ++VVR K F M P+T+D+ALEQL+ VDHDFY F N+ T  +N +
Sbjct: 131 SEVVRMKYFAMPPMTIDQALEQLQLVDHDFYMFLNKDTNAINVI 174

>UA82_DEIRA (Q9RVE7) Protein DR1082|
          Length = 191

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
 Frame = +2

Query: 440 KVVRTKVFEMAPLTVDEALEQLENVDHDFYSFRN--EQTGEV 559
           ++VR K FE+ P++ ++A+ Q+E + HDFY F++   QTG V
Sbjct: 136 EIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQDLQGQTGVV 177

>YVYD_BACSU (P28368) Hypothetical protein yvyD|
          Length = 189

 Score = 36.2 bits (82), Expect = 0.066
 Identities = 17/49 (34%), Positives = 30/49 (61%)
 Frame = +2

Query: 416 EDEETVLTKVVRTKVFEMAPLTVDEALEQLENVDHDFYSFRNEQTGEVN 562
           E+EE++   +VR K F + P+  +EA+ Q+  + H+F+ F N +T   N
Sbjct: 126 EEEESL--DIVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTNAETNLTN 172

>HIS6_ANASP (Q8YT31) Imidazole glycerol phosphate synthase subunit hisF (EC|
           4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase
           subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit
           hisF)
          Length = 259

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 416 EDEETVLTKVVRTKVFEMAPLTVDEALEQLENV 514
           ED +T++  V RT      PLTV   ++ LENV
Sbjct: 57  EDRDTIIDVVYRTAEQVFIPLTVGGGIQSLENV 89

>HIS6_ANAVT (Q3MEF5) Imidazole glycerol phosphate synthase subunit hisF (EC|
           4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase
           subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit
           hisF)
          Length = 257

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 416 EDEETVLTKVVRTKVFEMAPLTVDEALEQLENV 514
           ED +T++  V RT      PLTV   ++ LENV
Sbjct: 57  EDRDTIIDVVYRTAEQVFIPLTVGGGIQSLENV 89


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,037,952
Number of Sequences: 219361
Number of extensions: 316278
Number of successful extensions: 1142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)