ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27k23 |
|---|---|
| Clone Library Name | barley_pub |
>RPOC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1479 Score = 398 bits (1022), Expect = e-111 Identities = 202/212 (95%), Positives = 202/212 (95%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVK 182 F ENSKLTQRIY TNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVK Sbjct: 925 FISHENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVK 984 Query: 183 STISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSL 362 STISYTRKRYDRTS GP PHNRLDRAN NSFYSKAKIESLSQH EAIGTLLNRNKEY SL Sbjct: 985 STISYTRKRYDRTSAGPIPHNRLDRANINSFYSKAKIESLSQHPEAIGTLLNRNKEYHSL 1044 Query: 363 MILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEIFGPLGAIVASISHFSSSYYLLTHNK 542 MILSASNCSRIGLFKNSKHPNAIKEWNPRIPI EIFGPLGAIVASISHFSSSYYLLTHNK Sbjct: 1045 MILSASNCSRIGLFKNSKHPNAIKEWNPRIPIREIFGPLGAIVASISHFSSSYYLLTHNK 1104 Query: 543 ILLKKYLFVDNLKQTFQVLQELKYSLIDENKR 638 ILLKKYLFVDNLKQTFQVLQELKYSLIDENKR Sbjct: 1105 ILLKKYLFVDNLKQTFQVLQELKYSLIDENKR 1136
>RPOC2_SACOF (Q6ENX1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 353 bits (905), Expect = 3e-97 Identities = 182/212 (85%), Positives = 192/212 (90%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVK 182 F ENSKLTQRIY TNSQFVRTCLVVNWEQEEKE A ASLVEVR NDLIRDFLRIELVK Sbjct: 969 FISHENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEGARASLVEVRTNDLIRDFLRIELVK 1028 Query: 183 STISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSL 362 STISYTR+RYDRTS G P+NRLDR N+NSFYSKAKI+SLSQHQE IGTLLNRNKEY SL Sbjct: 1029 STISYTRRRYDRTSVGLIPNNRLDRNNTNSFYSKAKIQSLSQHQEVIGTLLNRNKEYPSL 1088 Query: 363 MILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEIFGPLGAIVASISHFSSSYYLLTHNK 542 MIL ASNCSRIGLFKNSK+PNA+KE NPRIPI +IFG LG IV SIS+FSSSYYLLTHN+ Sbjct: 1089 MILLASNCSRIGLFKNSKYPNAVKESNPRIPIRDIFGLLGVIVPSISNFSSSYYLLTHNQ 1148 Query: 543 ILLKKYLFVDNLKQTFQVLQELKYSLIDENKR 638 ILLKKYLF+DNLKQTFQVLQ LKYSLIDENKR Sbjct: 1149 ILLKKYLFLDNLKQTFQVLQGLKYSLIDENKR 1180
>RPOC2_SACHY (Q6L3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 353 bits (905), Expect = 3e-97 Identities = 182/212 (85%), Positives = 192/212 (90%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVK 182 F ENSKLTQRIY TNSQFVRTCLVVNWEQEEKE A ASLVEVR NDLIRDFLRIELVK Sbjct: 969 FISHENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEGARASLVEVRTNDLIRDFLRIELVK 1028 Query: 183 STISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSL 362 STISYTR+RYDRTS G P+NRLDR N+NSFYSKAKI+SLSQHQE IGTLLNRNKEY SL Sbjct: 1029 STISYTRRRYDRTSVGLIPNNRLDRNNTNSFYSKAKIQSLSQHQEVIGTLLNRNKEYPSL 1088 Query: 363 MILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEIFGPLGAIVASISHFSSSYYLLTHNK 542 MIL ASNCSRIGLFKNSK+PNA+KE NPRIPI +IFG LG IV SIS+FSSSYYLLTHN+ Sbjct: 1089 MILLASNCSRIGLFKNSKYPNAVKESNPRIPIRDIFGLLGVIVPSISNFSSSYYLLTHNQ 1148 Query: 543 ILLKKYLFVDNLKQTFQVLQELKYSLIDENKR 638 ILLKKYLF+DNLKQTFQVLQ LKYSLIDENKR Sbjct: 1149 ILLKKYLFLDNLKQTFQVLQGLKYSLIDENKR 1180
>RPOC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1527 Score = 347 bits (890), Expect = 2e-95 Identities = 179/212 (84%), Positives = 190/212 (89%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVK 182 F ENSKLTQRIY TNSQFVRTCLVVNWEQEEKE A ASLVEV+ NDLIRDFLRIELVK Sbjct: 962 FISHENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEGARASLVEVKTNDLIRDFLRIELVK 1021 Query: 183 STISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSL 362 STI YTR+RYDRTS G P+NRLDR N+NSFYSKAKI+SLSQHQE IGTLLNRNKEY SL Sbjct: 1022 STILYTRRRYDRTSVGLIPNNRLDRNNTNSFYSKAKIQSLSQHQEVIGTLLNRNKEYPSL 1081 Query: 363 MILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEIFGPLGAIVASISHFSSSYYLLTHNK 542 MIL ASNCSRIGLFKNSK+PNA+KE NPRIPI +IFG LG IV SIS+FSSSYYLLTHN+ Sbjct: 1082 MILLASNCSRIGLFKNSKYPNAVKESNPRIPIRDIFGLLGVIVPSISNFSSSYYLLTHNQ 1141 Query: 543 ILLKKYLFVDNLKQTFQVLQELKYSLIDENKR 638 ILLKKYLF+DNLKQT QVLQ LKYSLIDENKR Sbjct: 1142 ILLKKYLFLDNLKQTLQVLQGLKYSLIDENKR 1173
>RPOC2_ORYNI (Q6ENI2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 322 bits (824), Expect = 8e-88 Identities = 167/219 (76%), Positives = 186/219 (84%), Gaps = 7/219 (3%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVK 182 F ENSKLTQRIY TNSQFVRTCLV+NWEQEEKE+A ASLVE+RAN LIRDFLRI L+K Sbjct: 943 FISHENSKLTQRIYHTNSQFVRTCLVLNWEQEEKEEARASLVEIRANGLIRDFLRIGLIK 1002 Query: 183 STISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSL 362 STISYTRKRYD S G HNRLDR N+NSFYSKAKI+SLSQHQEAIGTLLNRNKEYQSL Sbjct: 1003 STISYTRKRYDSRSAGLILHNRLDRTNTNSFYSKAKIQSLSQHQEAIGTLLNRNKEYQSL 1062 Query: 363 MILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEIF-------GPLGAIVASISHFSSSY 521 M+LSASNCSRIG FKNSK+PN +KE NPRIPI + F G LG I SIS+FSSSY Sbjct: 1063 MVLSASNCSRIGFFKNSKNPNGVKESNPRIPIPKFFGLFRNFSGLLGTIAPSISNFSSSY 1122 Query: 522 YLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKR 638 YLLT+N+ILLKK+L +DNLKQ F+VLQ LK+SLI+EN+R Sbjct: 1123 YLLTYNQILLKKHLLLDNLKQNFKVLQGLKHSLINENQR 1161
>RPOC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 320 bits (819), Expect = 3e-87 Identities = 166/219 (75%), Positives = 186/219 (84%), Gaps = 7/219 (3%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVK 182 F ENSKLTQRIY TNSQFVRTCLV+NWEQEEKE+A ASLVE+RAN LIRDFLRI L+K Sbjct: 943 FISHENSKLTQRIYHTNSQFVRTCLVLNWEQEEKEEARASLVEIRANGLIRDFLRIGLIK 1002 Query: 183 STISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSL 362 STISYTRKRYD S G HNRLDR N+NSFYSKAKI+SLSQHQEAIGTLLNRNKEYQSL Sbjct: 1003 STISYTRKRYDSRSAGLILHNRLDRTNTNSFYSKAKIQSLSQHQEAIGTLLNRNKEYQSL 1062 Query: 363 MILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEIF-------GPLGAIVASISHFSSSY 521 M+LSASNCSRIG FKNSK+PN +KE NPRIPI + + G LG I SIS+FSSSY Sbjct: 1063 MVLSASNCSRIGFFKNSKNPNGVKESNPRIPIPKFWGLFRNFSGLLGTIAPSISNFSSSY 1122 Query: 522 YLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKR 638 YLLT+N+ILLKK+L +DNLKQ F+VLQ LK+SLI+EN+R Sbjct: 1123 YLLTYNQILLKKHLLLDNLKQNFKVLQGLKHSLINENQR 1161
>RPOC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1377 Score = 218 bits (556), Expect = 9e-57 Identities = 126/220 (57%), Positives = 150/220 (68%), Gaps = 8/220 (3%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK---EKAGASLVEVRANDLIRDFLRIE 173 + L N K + I T+ Q VRTCLV+NW+Q+ E+ AS VEVRAN LIRDFL+I+ Sbjct: 816 YILYGNGKPIRGISHTSLQLVRTCLVLNWDQDRNGSIEEVHASFVEVRANGLIRDFLKID 875 Query: 174 LVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEY 353 LVKS I Y+ KR D TS G P+N DR N N FY KA+I+SL+QHQ I TLLNRNKE Sbjct: 876 LVKSPILYSGKRNDTTSSGFIPNNGSDRTNINPFYFKARIQSLTQHQGTIRTLLNRNKEC 935 Query: 354 QSLMILSASNCSRIGLFKNSKHPNAIKE-----WNPRIPILEIFGPLGAIVASISHFSSS 518 QS +ILS+S+CSRIG F SK KE +P IPI GPLG V I++F SS Sbjct: 936 QSFLILSSSDCSRIGSFNGSKSHKVTKESITIKEDPTIPIRNSLGPLGT-VPKIANFDSS 994 Query: 519 YYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKR 638 YYL+THN+ILL KYL +DNLKQTFQV LKY L+DEN R Sbjct: 995 YYLITHNQILLNKYLSLDNLKQTFQV---LKYYLMDENGR 1031
>RPOC2_PHAAO (Q3BAQ2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1388 Score = 214 bits (545), Expect = 2e-55 Identities = 117/219 (53%), Positives = 146/219 (66%), Gaps = 7/219 (3%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L EN K + I T+ Q VR CLV+ W+QE+K EK AS VE+R NDL+ F+RI Sbjct: 816 YILYENGKSIRGISHTSIQLVRACLVLTWDQEKKSSIEEKVHASFVEIRTNDLLCYFIRI 875 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRAN-SNSFYSKAKIESLSQHQEAIGTLLNRNK 347 ELVKST+SYT KRYD G +N LDR + N F SKAKI+ QHQ +GTLLNRNK Sbjct: 876 ELVKSTLSYTEKRYDTAGSGLISNNELDRIHRKNPFDSKAKIQIFPQHQGTLGTLLNRNK 935 Query: 348 EYQSLMILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEIFGPLGAIVASISHFSSSYYL 527 E QS +ILS+SNCSRIG F S++ NA KE +P PI + GPLG IV I + SSYYL Sbjct: 936 ECQSFLILSSSNCSRIGPFNTSRYNNATKELDPMTPIRYLLGPLGTIVPRIVNSRSSYYL 995 Query: 528 LTHNKILLKKYLFVDNLKQTFQVLQ--ELKYSLIDENKR 638 T+N++ LKK ++N +QTFQVLQ +Y +DEN R Sbjct: 996 RTYNQVFLKKSFLLENFQQTFQVLQVPPFQYCFLDENSR 1034
>RPOC2_ACOCL (Q3V544) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 197 bits (502), Expect = 2e-50 Identities = 118/219 (53%), Positives = 141/219 (64%), Gaps = 7/219 (3%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK---EKAGASLVEVRANDLIRDFLRIE 173 + L N K + I T+ Q VRTCLV+NW+QE+ E AS VEVRANDLIRDF+RIE Sbjct: 815 YILYGNGKPIRGISHTSIQLVRTCLVLNWDQEQNGSIEGVRASFVEVRANDLIRDFIRIE 874 Query: 174 LVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEY 353 L KS I YT KR D G N DR N N Y K KI S QHQ +GTLLNRNKE Sbjct: 875 LCKSAILYTGKRKDIAGSGLIHDNVSDRTNINPVYLKDKIPSFIQHQGTVGTLLNRNKEC 934 Query: 354 QSLMILSASNCSRIGLFKNSKHPNAIKE---WNPRIPILEIFGPLGAIVASISH-FSSSY 521 QSL++LS+SNC RIG F SK+ N KE +P IPI + G LG V I++ F SY Sbjct: 935 QSLILLSSSNCFRIGPFNGSKYHNVPKESIKEDPIIPIRDSLGLLGTTVPKIANFFYLSY 994 Query: 522 YLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKR 638 +++THN ILL KYL D+LKQ FQV L+Y L+DEN+R Sbjct: 995 HVITHNHILLTKYLLRDHLKQAFQV---LRYCLMDENRR 1030
>RPOC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 195 bits (495), Expect = 1e-49 Identities = 116/222 (52%), Positives = 146/222 (65%), Gaps = 10/222 (4%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQE-----EKEKAGASLVEVRANDLIRDFLR 167 + L + K + I+ T+ Q VRTCLV+NW+Q+ E+E+A SL EVR NDLIR+F+R Sbjct: 809 YILYGDGKPIRGIFHTSIQLVRTCLVLNWDQDRAGSIEEEEAYTSLAEVRVNDLIRNFIR 868 Query: 168 IELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNK 347 I+LVKS IS T K D G P+N DR N+N F+SKAK +SLSQHQ I TLLNRNK Sbjct: 869 IDLVKSPISSTGKENDMAGSGLIPNNGSDRINTNPFFSKAKTQSLSQHQGTIRTLLNRNK 928 Query: 348 EYQ--SLMILSASNCSRIGLFKNSKHPNAIKE---WNPRIPILEIFGPLGAIVASISHFS 512 E Q SLM+LS+SNCSRIG SK+ N KE +P I I GPLG V +I +FS Sbjct: 929 EGQGESLMVLSSSNCSRIGPLNGSKYHNVTKESIQEDPMISIRNSLGPLGT-VPNILNFS 987 Query: 513 SSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKR 638 SSY+ +THN+IL KYL DN ++TF V K +DEN+R Sbjct: 988 SSYHSITHNEILFNKYLLPDNSRETFLV---PKSYFMDENRR 1026
>RPOC2_SOLTU (Q2VEI6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 192 bits (487), Expect = 9e-49 Identities = 120/223 (53%), Positives = 148/223 (66%), Gaps = 13/223 (5%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K + I T+ Q VRTCLV+NW Q++K E+A AS VE+R N LIR FLRI Sbjct: 815 YILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRI 874 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSF-----YSKAKIE-SLSQHQEAIGTL 332 LVKS ISY KR D + G N D N N F Y KAKI+ SL+Q Q I TL Sbjct: 875 NLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSAIYSYPKAKIQQSLNQPQGTIHTL 934 Query: 333 LNRNKEYQSLMILSASNCSRIGLFKNSKHPNAIKE---WNPRIPILEIFGPLGAIVASIS 503 LNRNKE QSL+ILSA+NCSR+ FK+ K+ + IKE +P IPI GPLG + I Sbjct: 935 LNRNKECQSLIILSAANCSRMEPFKDVKYHSVIKESIKKDPLIPIRNSLGPLGTCL-PIE 993 Query: 504 HFSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDEN 632 +F SSY+L+THN+IL+ KYL +DNLKQTFQV+ +LKY L+DEN Sbjct: 994 NFYSSYHLITHNQILVTKYLQLDNLKQTFQVI-KLKYYLMDEN 1035
>RPOC2_NICTO (Q33C48) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 191 bits (484), Expect = 2e-48 Identities = 119/223 (53%), Positives = 147/223 (65%), Gaps = 13/223 (5%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K + I T+ Q VRTCLV+NW Q++K E+A AS VE+R N LIR FLRI Sbjct: 815 YILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRI 874 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSF-----YSKAKIE-SLSQHQEAIGTL 332 LVKS ISY KR D + G N D N N F YSKAKI+ SL+Q Q I TL Sbjct: 875 NLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIYSYSKAKIQQSLNQPQGTIHTL 934 Query: 333 LNRNKEYQSLMILSASNCSRIGLFKNSKHPNAIKE---WNPRIPILEIFGPLGAIVASIS 503 LNRNKE QSL+ILSA+NCSR+G FK+ K+ + IKE +P IPI GPLG + I Sbjct: 935 LNRNKECQSLIILSAANCSRMGPFKDVKYHSVIKESIKKDPLIPIRNSLGPLGTSL-PIE 993 Query: 504 HFSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDEN 632 +F SSY+L+THN+IL+ YL +DNLKQTFQV+ + Y L+DEN Sbjct: 994 NFYSSYHLITHNQILVTNYLQLDNLKQTFQVI-KFHYYLMDEN 1035
>RPOC2_NICSY (Q3C1G9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 191 bits (484), Expect = 2e-48 Identities = 118/223 (52%), Positives = 148/223 (66%), Gaps = 13/223 (5%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K + I T+ Q VRTCLV+NW Q++K E+A AS VE+R N LIR FLRI Sbjct: 815 YILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRI 874 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSF-----YSKAKIE-SLSQHQEAIGTL 332 LVKS ISY KR D + G N D N N F YSKAKI+ S++Q Q I TL Sbjct: 875 NLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIYSYSKAKIQQSINQPQGTIHTL 934 Query: 333 LNRNKEYQSLMILSASNCSRIGLFKNSKHPNAIK---EWNPRIPILEIFGPLGAIVASIS 503 LNRNKE QSL+ILSA+NCSR+G FK+ K+ + IK + +P IPI GPLG + I Sbjct: 935 LNRNKECQSLIILSAANCSRMGPFKDVKYHSVIKKSIKKDPLIPIRNSLGPLGTSL-PIE 993 Query: 504 HFSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDEN 632 +F SSY+L+THN+IL+ YL +DNLKQTFQV+ + KY L+DEN Sbjct: 994 NFYSSYHLITHNQILVTNYLQLDNLKQTFQVI-KFKYYLMDEN 1035
>RPOC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1388 Score = 191 bits (484), Expect = 2e-48 Identities = 118/223 (52%), Positives = 148/223 (66%), Gaps = 13/223 (5%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K + I T+ Q VRTCLV+NW Q++K E+A AS VE+R N LIR FLRI Sbjct: 811 YILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRI 870 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSF-----YSKAKIE-SLSQHQEAIGTL 332 LVKS ISY KR D + G N D N N F YSKAKI+ S++Q Q I TL Sbjct: 871 NLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIYSYSKAKIQQSINQPQGTIHTL 930 Query: 333 LNRNKEYQSLMILSASNCSRIGLFKNSKHPNAIK---EWNPRIPILEIFGPLGAIVASIS 503 LNRNKE QSL+ILSA+NCSR+G FK+ K+ + IK + +P IPI GPLG + I Sbjct: 931 LNRNKECQSLIILSAANCSRMGPFKDVKYHSVIKKSIKKDPLIPIRNSLGPLGTSL-PIE 989 Query: 504 HFSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDEN 632 +F SSY+L+THN+IL+ YL +DNLKQTFQV+ + KY L+DEN Sbjct: 990 NFYSSYHLITHNQILVTNYLQLDNLKQTFQVI-KFKYYLMDEN 1031
>RPOC2_NYMAL (Q6EW58) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1401 Score = 189 bits (480), Expect = 6e-48 Identities = 119/222 (53%), Positives = 146/222 (65%), Gaps = 10/222 (4%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK---EKAGASLVEVRANDLIRDFLRIE 173 + L + K + I T+ Q VRTCLV+NW+Q++K EK AS EVRANDLIR F+RI+ Sbjct: 820 YILYGDGKPIRGISHTSIQLVRTCLVLNWDQDKKGSIEKVQASSAEVRANDLIRYFIRID 879 Query: 174 LVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEY 353 LVKS I YT KR DR SG P AN+N F SK KI+SLSQHQ + T LNRNKE Sbjct: 880 LVKSPILYTGKRNDR-SGSVIPDTGSYCANTNLFSSKVKIKSLSQHQGTVRTFLNRNKEG 938 Query: 354 QSLMILSASNCSRIGLFKNSKHPNAIKE-----WNPRIPILEIFGPLGAIVASISHFSSS 518 QSL++ S+SNCSRI + SK+ N KE + IPIL + GPLG V I +FS S Sbjct: 939 QSLIVFSSSNCSRINV---SKYHNVTKESIKEKEDTPIPILNLLGPLGT-VPKIHNFSPS 994 Query: 519 YYLLTHNKILLKKYLFVDNL--KQTFQVLQELKYSLIDENKR 638 Y+ +THN+ILL KYL +DN KQTFQ+ LKY L+DEN R Sbjct: 995 YHSITHNEILLNKYLILDNKNPKQTFQL---LKYYLVDENGR 1033
>RPOC2_EUCGG (Q49L08) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 188 bits (477), Expect = 1e-47 Identities = 113/222 (50%), Positives = 145/222 (65%), Gaps = 10/222 (4%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + + N K + I T+ Q VRTCL++NW+Q++K E+A S VEV N LIRDFLRI Sbjct: 816 YIVYRNGKPIRGISDTSIQLVRTCLILNWDQDKKSSSIEEAHTSFVEVSTNGLIRDFLRI 875 Query: 171 ELVKSTISYTRKRYDRTSGG--PTPHNRLDRANSNSFYSKAKIESL-SQHQEAIGTLLNR 341 +LVK ISY RKR D + G N D NSN FYSK KI+ L SQ+Q I TLLN+ Sbjct: 876 DLVKFPISYLRKRNDPSGSGLISDSDNVSDHTNSNPFYSKTKIQQLLSQNQGTIRTLLNK 935 Query: 342 NKEYQSLMILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEI---FGPLGAIVASISHFS 512 NKE SL+ILS+SNC R+G F K+ N IKE + PI++I GPLG ++ + +F Sbjct: 936 NKECPSLIILSSSNCFRMGPFNAGKYHNVIKESIKKDPIIKIRNSIGPLGTVLQFV-NFY 994 Query: 513 SSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKR 638 S YYL+THN IL+ KYL ++NLKQTFQV + Y L+DEN R Sbjct: 995 SFYYLITHNPILVTKYLQLENLKQTFQV---INYYLMDENGR 1033
>RPOC2_ATRBE (Q8S8Y1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1389 Score = 183 bits (465), Expect = 3e-46 Identities = 117/221 (52%), Positives = 146/221 (66%), Gaps = 11/221 (4%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K + I T+ Q VRTCLV+NW Q++K E+A AS VE+R N LIR FLRI Sbjct: 815 YILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRI 874 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSF-----YSKAKI-ESLSQHQEAIGTL 332 LVKS ISY KR D + G N D N N F YSKAKI +SL+Q Q I TL Sbjct: 875 NLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIYSYSKAKIQQSLNQPQGTIHTL 934 Query: 333 LNRNKEYQSLMILSASNCSRIGLFK-NSKHPNAIKEWNPRIPILEIFGPLGAIVASISHF 509 LNRNKE QSL+ILS++NCSR+G K +S ++IK+ +P IPI GPLG + I +F Sbjct: 935 LNRNKECQSLIILSSANCSRMGTLKYHSVIKDSIKK-DPLIPIRNSLGPLGTCL-PIENF 992 Query: 510 SSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDEN 632 SSY L+THN+IL+ YL +DNLKQTFQV+ + KY L+DEN Sbjct: 993 YSSYRLITHNQILVTNYLQLDNLKQTFQVI-KFKYYLMDEN 1032
>RPOC2_PANGI (Q68S16) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1387 Score = 182 bits (463), Expect = 6e-46 Identities = 112/223 (50%), Positives = 146/223 (65%), Gaps = 13/223 (5%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L K + Y T+ Q VRTCLV+NW Q++K E+A S VE+R N LIRDFL+I Sbjct: 812 YILYGTGKPIRGFYDTSIQLVRTCLVLNWVQDKKSSSIEEARTSFVEIRINSLIRDFLKI 871 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSF-----YSKAKI-ESLSQHQEAIGTL 332 +L KS I YT KR D + G N DR N N F YSKA+I ESL+Q+Q I TL Sbjct: 872 DLAKSPILYTGKRKDPSGSGLISENGSDRTNINPFSSSFFYSKARIKESLNQNQGTIHTL 931 Query: 333 LNRNKEYQSLMILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEI---FGPLGAIVASIS 503 LNRNKE QSL+ILS+SNC R+G F + K+ N IKE + P+++I GPLG + I+ Sbjct: 932 LNRNKECQSLIILSSSNCFRMGPFNDVKYHNVIKESIQKDPLIQIRNSLGPLGTAL-QIA 990 Query: 504 HFSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDEN 632 +F S +L+T+N+IL+ YL +DNLKQ+FQV LKY L+DEN Sbjct: 991 NFYSFSHLITYNQILVTNYLQLDNLKQSFQV---LKYYLMDEN 1030
>RPOC2_LACSA (Q56P11) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1381 Score = 182 bits (462), Expect = 7e-46 Identities = 113/208 (54%), Positives = 138/208 (66%), Gaps = 10/208 (4%) Frame = +3 Query: 39 IYXTNSQFVRTCLVVNWEQEEK-EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYD 215 I+ T+ Q VRT LV+NW+Q++K EKA AS VE+R N L+R FLRI+L KS ISYT KR D Sbjct: 825 IWDTSIQLVRTSLVLNWDQDKKIEKACASFVEIRTNGLLRYFLRIDLAKSPISYTGKRND 884 Query: 216 RTSGGPTPHNRLDRANSNSF-----YSKAKI-ESLSQHQEAIGTLLNRNKEYQSLMILSA 377 + G N DRAN N F YSK++I ESL+ +Q I TLLNRNKE QSL+ILS+ Sbjct: 885 LSGSGLISENGSDRANVNPFSSIYSYSKSRIKESLNPNQGTIHTLLNRNKESQSLIILSS 944 Query: 378 SNCSRIGLFKNSKHPNAIKE---WNPRIPILEIFGPLGAIVASISHFSSSYYLLTHNKIL 548 SNC RIG F + K PN IKE NP IPI GPLG I +F +L+THN+IL Sbjct: 945 SNCFRIGPFNDVKSPNVIKESIKKNPLIPIRNSLGPLGT-GFPIYNFDLFSHLITHNQIL 1003 Query: 549 LKKYLFVDNLKQTFQVLQELKYSLIDEN 632 + YL +DN KQ FQ+ LKY L+DEN Sbjct: 1004 VTNYLQLDNFKQIFQI---LKYYLLDEN 1028
>RPOC2_CUCSA (Q4VZP3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1394 Score = 181 bits (459), Expect = 2e-45 Identities = 113/221 (51%), Positives = 143/221 (64%), Gaps = 11/221 (4%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K + I T+ Q VRTCL++NW++++K E A AS VEV N L+R+FLRI Sbjct: 817 YILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRI 876 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSF---YSKAKI-ESLSQHQEAIGTLLN 338 +L KS +Y RKR D + G +N DR N N F YSK ++ +S SQ+Q I TLLN Sbjct: 877 DLGKSDTAYIRKRKDPSGSGLIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLLN 936 Query: 339 RNKEYQSLMILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEI---FGPLGAIVASISHF 509 RNKE QSL+ILSASNC +I LF + K N IKE + + P++ I GPLGA I +F Sbjct: 937 RNKERQSLIILSASNCLQIDLFNDVKDYNVIKESSKKDPLISIRNSLGPLGA-APQIVNF 995 Query: 510 SSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDEN 632 S YYL+THN I L KYL +DNLKQ FQV LKY L+DEN Sbjct: 996 YSFYYLITHNPISLTKYLQLDNLKQIFQV---LKYYLMDEN 1033
>RPOC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1361 Score = 176 bits (447), Expect = 4e-44 Identities = 106/222 (47%), Positives = 140/222 (63%), Gaps = 10/222 (4%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K+T+ I T+ Q VRTCLV+NW Q++K E+A S VEVR N +I+DFL++ Sbjct: 805 YILYGNGKVTRGISDTSIQLVRTCLVLNWNQDKKGSSIEEARGSFVEVRTNGMIQDFLKV 864 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYS-----KAKIE-SLSQHQEAIGTL 332 LVK ISY KR D +S D N N FYS K K++ S +Q+Q + TL Sbjct: 865 NLVKPAISYISKRNDPSS---EKKEGSDHTNMNPFYSIYIYPKTKLQKSFNQNQGTVRTL 921 Query: 333 LNRNKEYQSLMILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEIFGPLGAIVASISHFS 512 L NKE Q +ILS+SNC RIG FK K+P + + +P IPI FGPLG + I++F Sbjct: 922 LGINKECQFFLILSSSNCFRIGPFKGVKYPKELIKKDPLIPIRNSFGPLGTAL-QIANFF 980 Query: 513 SSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKR 638 S YYL+THN+IL+ YL +DNLKQTFQ + +Y L+DEN R Sbjct: 981 SFYYLITHNQILVTNYLQLDNLKQTFQPF-KFQYYLMDENGR 1021
>RPOC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1332 Score = 176 bits (447), Expect = 4e-44 Identities = 113/226 (50%), Positives = 143/226 (63%), Gaps = 14/226 (6%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 F L N K + I T+ Q VRTCLV+NW ++EK E+A AS VEV N LIR FLRI Sbjct: 787 FILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRI 846 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAK---IESLSQHQEAIGTLLNR 341 +LVKS ISY RKR D +S G +N DR N N F+S K +SLSQ I LLNR Sbjct: 847 DLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNR 906 Query: 342 NKEYQSLMILSASNCSRIGLFKNSKHPNAIKE------WNPRIPILEIFGPLGAIVASIS 503 NKE +S +ILS+SNC ++G F N K+ N IKE N +IPI GPLG + I+ Sbjct: 907 NKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLG-VAPQIA 965 Query: 504 HFSSSYYLLTHNKI-LLKKYLFVDNLKQTFQVLQELKYSLIDENKR 638 +F S Y+L+THNKI +KK L ++ K+TFQV +KY L+DEN+R Sbjct: 966 NFFSFYHLITHNKISSIKKNLQLNKFKETFQV---IKYYLMDENER 1008
>RPOC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 172 bits (437), Expect = 6e-43 Identities = 109/215 (50%), Positives = 136/215 (63%), Gaps = 8/215 (3%) Frame = +3 Query: 18 NSKLTQRIYXTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRIELVKS 185 N K + I T+ Q VRT ++NW+Q++K E A AS VEVRA LIRDFLRI+LVKS Sbjct: 818 NGKPIREISDTSIQLVRTWFILNWDQDKKSASAEAAHASFVEVRAKGLIRDFLRIDLVKS 877 Query: 186 TISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKI-ESLSQHQEAIGTLLNRNKEYQSL 362 I RKR D + G N D N N FYSK K+ +S Q+ I TLLN+NKE SL Sbjct: 878 PILDPRKRNDPSGSGLISDNVSDHTNINPFYSKPKMKQSPRQNHGTIRTLLNQNKECPSL 937 Query: 363 MILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEI---FGPLGAIVASISHFSSSYYLLT 533 MILSASN R+G F + K N IKE + I++I GPLG + + +F S YY +T Sbjct: 938 MILSASNWFRMGPFNDVKSQNVIKESIKKDAIIQIRNSIGPLGTAL-QVVNFDSFYYFIT 996 Query: 534 HNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKR 638 HN++LL KYL V+NLKQTFQVLQ Y L+DE+ R Sbjct: 997 HNQVLLTKYLQVENLKQTFQVLQ---YYLMDESGR 1028
>RPOC2_PEA (P12227) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) (Fragment) Length = 1163 Score = 150 bits (379), Expect = 3e-36 Identities = 101/220 (45%), Positives = 133/220 (60%), Gaps = 8/220 (3%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K + I T Q VRTCLV NW+ + E+A AS +EVR N LI FLRI Sbjct: 607 YILYGNGKSIRGISDTRIQLVRTCLVFNWDDGKNSSSIEEAPASFIEVRTNGLIEYFLRI 666 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANS-NSFYSKAKI-ESLSQHQEAIGTLLNRN 344 +LVKS SY RKR + + G N+ DR N S +SK KI +SLSQ+ I LLNRN Sbjct: 667 DLVKSNTSYIRKRNEPSGFGLIGDNKSDRINPFFSIHSKGKIQQSLSQNHGTIRMLLNRN 726 Query: 345 KEYQSLMILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEI--FGPLGAIVASISHFSSS 518 KE +S +ILS+SNC ++ F N K N IK + PI+ I GPLG I +++F S Sbjct: 727 KECRSWIILSSSNCFQMRPFNNEKSHNGIK----KDPIISINNNGPLG-IALQVANFYSL 781 Query: 519 YYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKR 638 Y+L+THN+I + K L +D L + FQV +KY L+DEN + Sbjct: 782 YHLITHNQISIIKNLQLDKLTEIFQV---IKYYLMDENDK 818
>RPOC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 149 bits (376), Expect = 7e-36 Identities = 100/226 (44%), Positives = 134/226 (59%), Gaps = 14/226 (6%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K + I T+ Q VRTCLV+NW+Q++K E A AS VE+ L+R FLRI Sbjct: 813 YILSGNGKSIRGISDTSIQLVRTCLVLNWDQDKKFSSIENAHASFVEISIKGLVRYFLRI 872 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSFY---SKAKI-ESLSQHQEAIGTLLN 338 +LVKS ISY RKR + N DR N F+ S+ KI +SLS++ I LLN Sbjct: 873 DLVKSHISYIRKRNNPPGSRFILDNESDRTTINPFFSIDSREKIQQSLSKNHGTIRMLLN 932 Query: 339 RNKEYQSLMILSASNCSRIGLFKNSKHPNAIKEW------NPRIPILEIFGPLGAIVASI 500 RN++ +SL+ILS+SNC +I F + K+ N IKE + IPI GPLG I + Sbjct: 933 RNEKCRSLIILSSSNCFQIRSFNHGKYYNGIKEGINQIQRDAMIPIKNSLGPLG-IAPQV 991 Query: 501 SHFSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKR 638 +HF Y L+THN+I + K +D LK+TFQV Q Y +DEN+R Sbjct: 992 AHF-DFYRLITHNQISIIKNGQLDKLKETFQVFQ---YYFLDENER 1033
>RPOC2_SILLA (Q589B8) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 145 bits (366), Expect = 1e-34 Identities = 94/220 (42%), Positives = 135/220 (61%), Gaps = 10/220 (4%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K+T+ IY T+ Q VRTCLV+NW Q++K E+A AS VEVR N +IR FL+I Sbjct: 807 YILYGNGKVTRGIYDTSIQLVRTCLVLNWNQDKKDSSIEEARASFVEVRTNGIIRYFLKI 866 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSF---YSKAKI-ESLSQHQEAIGTLLN 338 L+ +SY K R + + L+ N N F YSK K+ ++ + +Q + L+ Sbjct: 867 GLMNRALSYIGK---RNNPPLFSDDGLEYTNMNPFFSIYSKPKLQQAFNPNQGTVRMLVG 923 Query: 339 RNKEYQSLMILSASNCSRIGLF--KNSKHPNAIKEWNPRIPILEIFGPLGAIVASISHFS 512 +NKE QS +ILS+SNC R+G F K+P + + I I FGPLG ++ ++ F Sbjct: 924 KNKECQSFIILSSSNCFRMGPFTLNGVKYPKESIKKDRLILIKNSFGPLGTVLNFVNFF- 982 Query: 513 SSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDEN 632 Y+L+THN+IL+ YL +DNLKQT QVL + +Y L+DEN Sbjct: 983 FFYHLITHNQILVNNYLQLDNLKQTCQVL-KYQYYLMDEN 1021
>RPOC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1376 Score = 140 bits (353), Expect = 3e-33 Identities = 96/214 (44%), Positives = 122/214 (57%), Gaps = 4/214 (1%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK-EKAGASLVEVRANDLIRDFLRIELV 179 + L N K T+ I T+ Q VRTCLV+NW++ E+ A VEV LI+DF+RI LV Sbjct: 813 YILYGNGKPTRGISDTSIQLVRTCLVLNWDKNSSLEEVRAFFVEVSTKGLIQDFIRIGLV 872 Query: 180 KSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQS 359 KS ISY RKR + G + ++ S S S +SL Q+ I LNRNKE QS Sbjct: 873 KSHISYIRKRNNSPDSGLISADHMNPFYSISPKSGILQQSLRQNHGTIRMFLNRNKESQS 932 Query: 360 LMILSASNCSRIGLFKNSKHPNAIKE---WNPRIPILEIFGPLGAIVASISHFSSSYYLL 530 L+ILS+SNC R+G F + KH N I + N I I GPLG IS+F S LL Sbjct: 933 LLILSSSNCFRMGPFNHVKHHNVINQSIKKNTLITIKNSSGPLGT-ATPISNFYSFLPLL 991 Query: 531 THNKILLKKYLFVDNLKQTFQVLQELKYSLIDEN 632 T+N+I L KY +DNLK F Q++ LIDEN Sbjct: 992 TYNQISLIKYFQLDNLKYIF---QKINSYLIDEN 1022
>RPOC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1384 Score = 103 bits (258), Expect = 3e-22 Identities = 86/224 (38%), Positives = 114/224 (50%), Gaps = 12/224 (5%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K T+ I T+ Q VRTCLV+NW+Q+ K E+ A VEV LIRDF+RI Sbjct: 818 YILYGNGKPTRGISDTSIQLVRTCLVLNWDQDNKNSSLEEVRAFFVEVNTKGLIRDFIRI 877 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYS---KAKI--ESLSQHQEAIGTLL 335 LVKS ISY RKR + +S + + N FYS KA I +SL Q+ I L Sbjct: 878 GLVKSHISYIRKRNNPSSEKKEGSDH----SMNPFYSISPKAGILHQSLRQNHGTIRMFL 933 Query: 336 NRNKEYQSLMILSASNCSRIGLFKNSKHPNAIKEWNPRIP---ILEIFGPLGAIVASISH 506 NRN+ L+ILS+SNC RIG F + K+ N I + + I P G + + Sbjct: 934 NRNRN-PILLILSSSNCFRIGPFNHVKYHNVINQSIKKKTSNYIKNCRAPYGTAIQILIF 992 Query: 507 FSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKR 638 ++ L N+I KYL + F V+ LIDEN R Sbjct: 993 IHFAFTKLI-NQISCIKYLHLQTSNVFFPVIHSY---LIDENGR 1032
>RPOC2_PINTH (P41606) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1224 Score = 95.5 bits (236), Expect = 1e-19 Identities = 71/211 (33%), Positives = 113/211 (53%), Gaps = 5/211 (2%) Frame = +3 Query: 15 ENSKLTQRIYXTNSQFVRTCLVVNWEQEE--KEKAGASLVEVRANDLIRDFLRIELVKST 188 E+ + Q + + VRTC+ +WEQ + + +A SL+ VR N ++ + ++I L+K Sbjct: 665 EDGERIQVMSDISIPLVRTCIGFDWEQIDSIESEAYVSLISVRTNKIVNNMVQISLMKYP 724 Query: 189 ISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSLMI 368 + +R ++TS HN LD N S S + +S+HQ I +L N ++ S M+ Sbjct: 725 PFFMGRRDNKTSPNLMFHNNLDHTNLLS--SNGASQLISKHQGIICSLSNGEEDSGSFMV 782 Query: 369 LSASNCSRIGLFKNSKHPNAIKEWNPRIP---ILEIFGPLGAIVASISHFSSSYYLLTHN 539 LS S+ RI LF +SK + + N + P I+E G LG + + + F SS++ LT+ Sbjct: 783 LSPSDYFRIVLFNDSKCYDTGNQSNRKDPMRKIIEFSGLLGNLHSITNRFPSSHF-LTYK 841 Query: 540 KILLKKYLFVDNLKQTFQVLQELKYSLIDEN 632 K+L KK+ N TFQV KY +DEN Sbjct: 842 KVLSKKHSIFHNSFNTFQV---PKYYFMDEN 869
>RPOC2_PINKO (Q85X62) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1209 Score = 92.8 bits (229), Expect = 8e-19 Identities = 65/194 (33%), Positives = 103/194 (53%), Gaps = 5/194 (2%) Frame = +3 Query: 9 LXENSKLTQRIYXTNSQFVRTCLVVNWEQEE--KEKAGASLVEVRANDLIRDFLRIELVK 182 L E+ + Q + T+ VRTCL +WEQ + + +A SL+ VR N ++ + ++I L+K Sbjct: 661 LYEDGERIQVMSDTSIPLVRTCLGFDWEQIDSIESEAYVSLISVRTNKIVNNMVQISLMK 720 Query: 183 STISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSL 362 + +R ++ S HN LD ++N F S + +S+HQ I +L N ++ S Sbjct: 721 YPPFFMGRRDNKASSNLMFHNNLD--HTNLFSSNGASQLISKHQGTICSLSNGEEDSGSF 778 Query: 363 MILSASNCSRIGLFKNSK---HPNAIKEWNPRIPILEIFGPLGAIVASISHFSSSYYLLT 533 M+LS S+C RI LF +SK N +P I+E G LG + + S F SS + +T Sbjct: 779 MVLSPSDCFRIVLFNDSKCYDTGNKSNRKDPMRKIIEFSGLLGHLHSITSRFPSSQF-IT 837 Query: 534 HNKILLKKYLFVDN 575 K+L KK+ N Sbjct: 838 DKKVLSKKHSIFHN 851
>RPOC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 70.1 bits (170), Expect = 5e-12 Identities = 63/244 (25%), Positives = 114/244 (46%), Gaps = 32/244 (13%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEKEK-AGASLVEVRANDLIRDFLRIELV 179 + L E+ + Q I N Q ++TCL+V+W+++ K A S ++++ + + FL+I L+ Sbjct: 792 YLLYEDDEQIQIINEKNIQLIQTCLLVHWKKKYFFKEANVSFLKIKTKNNFKTFLQISLI 851 Query: 180 KSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQS 359 + S K+ ++T N L + + F+S +K E ++ Q I + N+N QS Sbjct: 852 E--YSNLEKKKEKTIS----KNVLKKNYYDHFFSISKNELKNKKQGVIRIISNQNNGMQS 905 Query: 360 LMILSASNCSRIGLFKNSKHPNAIK-----------EWNPRIPIL--------------- 461 +ILS+S+ + FK +IK E+N IL Sbjct: 906 FIILSSSDLVKTFKFKKLTKNISIKTNTNTSTAKFFEFNKNFKILNKKKKLNLTKKNFSI 965 Query: 462 -----EIFGPLGAIVASISHFSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLID 626 + G LG + +++ SS+YL+ + K++ KY + + T Q K+ LID Sbjct: 966 GLLLFKKLGFLGNLHNIVTNSFSSFYLINYTKLISNKYSIITKFQHT---CQNPKWYLID 1022 Query: 627 ENKR 638 E+K+ Sbjct: 1023 ESKK 1026
>RPOC2_ANTFO (Q85C71) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1445 Score = 55.5 bits (132), Expect = 1e-07 Identities = 64/280 (22%), Positives = 110/280 (39%), Gaps = 68/280 (24%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEK-EKAGASLVEVRANDLIRDFLRIELV 179 + L E+ + + T Q ++T LV++W+++ +K ASL E+ N L + FL+I L+ Sbjct: 810 YLLYEDGEEVEVTNKTGIQLIQTGLVLDWKEDSSIKKVYASLTEIETNGLSKKFLQISLI 869 Query: 180 KSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQS 359 + I K+ + + N ++ ++ + Y ++ I N N+E +S Sbjct: 870 EHPIFEIEKKKNNVNLKYLFTNEINYSSHSFNYENGLFNG---YRGIIRISSNENQEDKS 926 Query: 360 LMILSASNCSRIGLFKNSK----------------------------------------- 416 L ILS + +I L KNS+ Sbjct: 927 LPILSPFDFVQIFLSKNSEEYTPEMKDEGNFNLDTNSIFYAKSFVKKFNQNSITSSQNSS 986 Query: 417 ----------HPNAIKEWNPR----------------IPILEIFGPLGAIVASISHFSSS 518 H N +E+N R I +L G LG + S F S Sbjct: 987 GTFINKEFYNHNNINQEFNSRKIIRNFFLSIERNFMEILLLRKLGLLGNSHSLPSPFQFS 1046 Query: 519 YYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKR 638 + THN+ ++ +Y ++NL+ FQV K+ DENK+ Sbjct: 1047 CWANTHNQPIINRYSILENLRDVFQV---PKWYFFDENKK 1083
>RPOC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1330 Score = 54.3 bits (129), Expect = 3e-07 Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 24/236 (10%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEE-KEKAGASLVEVRANDLIRDFLRIELV 179 + L E+S+ + T+ Q ++TCL++NWE + ++A S +++R N +I++F +I L+ Sbjct: 761 YILYEDSEEVEINPDTDIQLIQTCLILNWETKVFIKEAHISFIKIRINKIIKNFFQINLI 820 Query: 180 KSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSK--AKIESLSQHQEAIGTLLNRNKEY 353 ++ +K+ + N L + K KI LS+ I T N+N+E Sbjct: 821 ENINLMNKKKNNNII-----LNYLFKKKRYIINQKDCEKILLLSKTWGIIRTPSNKNQEK 875 Query: 354 QSLMILSASNCSRIGLFKNSKHPNAIKE-------WNPR--------------IPILEIF 470 +ILS N + LF +K I+ + P+ + L + Sbjct: 876 SFFLILSPFNLFQTILFDKTKQNLKIENNVEKLFTYEPKKIIKTFNIEKRKNFVEFLGLL 935 Query: 471 GPLGAIVASISHFSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKR 638 G L I S FS + +K + + +DNLK+ ++ K+ ++ENK+ Sbjct: 936 GYLQNITKSFQLFSCKKF---SDKSIPINFSIIDNLKKKIKI---SKWFFLNENKK 985
>RPOC2_PSINU (Q8WI26) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1408 Score = 44.7 bits (104), Expect = 2e-04 Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 7/146 (4%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNWEQEEKEKAG-ASLVEVRANDLIRDFLRIELV 179 + L E+ + Q + Q V+TCL+++WE++ KA S++E+R N +I+ FL+I L+ Sbjct: 803 YMLYEDGEEIQIKNNMSIQLVQTCLLLDWEKKSPIKAAKTSILELRINKIIKTFLQISLL 862 Query: 180 KSTISYTR-KRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLS-----QHQEAIGTLLNR 341 S Y + ++ R N SF + + ++L +HQ I ++ NR Sbjct: 863 NSFDFYVKGSKFKRFFN-----------NKKSFVADSIPKTLESQLSIKHQGTIRSVSNR 911 Query: 342 NKEYQSLMILSASNCSRIGLFKNSKH 419 S ++LS S+ + L N ++ Sbjct: 912 K---TSFLVLSPSDSFQNSLSTNFQY 934
>RPOC2_ADICA (Q85FM9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1420 Score = 35.0 bits (79), Expect = 0.19 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 11/99 (11%) Frame = +3 Query: 3 FYLXENSKLTQRIYXTNSQFVRTCLVVNW-----EQEEKEKAGASLVEVRANDLIRDFLR 167 F +N + + I +Q VR CL++ W E +++ SL+ V+ + L + FL+ Sbjct: 805 FICCKNGEKIEVINDVPTQLVRLCLIIEWQKYLHETLPRKRNYFSLISVKISYLFKTFLQ 864 Query: 168 IELVKSTISYTRKRYD---RTS---GGPTPHNRLDRANS 266 + + S + R D RTS G P+P +LD ANS Sbjct: 865 VNPMVSPPTQRGVRVDEIFRTSTPLGKPSP-PQLDLANS 902
>SYFB_HELPY (P56145) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 764 Score = 31.6 bits (70), Expect = 2.1 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 3/131 (2%) Frame = +3 Query: 93 QEEKEKAGASLVEVRANDLIRDFLRIELVKS-TISYTRKRYDRTSGGPTPHNRLDRANSN 269 Q +K+ + L+E D I L++ +K T+ R++ G P N D N Sbjct: 299 QVQKDLSECLLLEASYTDPISLSLKLHALKDKTLQKDNALIYRSARGSNP-NLSDGLNFL 357 Query: 270 SFYSKAKIESLSQHQEAIG--TLLNRNKEYQSLMILSASNCSRIGLFKNSKHPNAIKEWN 443 S + KA I Q + ++ TL + ++ ++ L+ G+ KN ++KE N Sbjct: 358 SAHLKATILESKQTEHSLKDRTLTFQLEDITEILGLAVEKEKIQGILKNLGFKVSVKEPN 417 Query: 444 PRIPILEIFGP 476 + ILE+ P Sbjct: 418 SKPQILEVIAP 428
>COX3_APILI (P34843) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 259 Score = 31.6 bits (70), Expect = 2.1 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Frame = +3 Query: 420 PNAIKEWNP-RIPILEIFGPLGA-IVASISHFSSSYYLLTHNKILLKKYLFVDNLKQT-F 590 P IK +NP IP+L F + + ++SH YYL+ +N L K YL + L F Sbjct: 117 PKNIKFFNPMEIPLLNSFILVSSGFTVTLSH----YYLIINNLKLSKSYLLLTILLGIYF 172 Query: 591 QVLQELKYS 617 +LQ ++YS Sbjct: 173 TILQTIEYS 181
>APOB_HUMAN (P04114) Apolipoprotein B-100 precursor (Apo B-100) [Contains:| Apolipoprotein B-48 (Apo B-48)] Length = 4563 Score = 30.0 bits (66), Expect = 6.1 Identities = 16/66 (24%), Positives = 31/66 (46%) Frame = +3 Query: 15 ENSKLTQRIYXTNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVKSTIS 194 E +K T +Y + Q + L++NW QE A + ++ + + + D R + + I Sbjct: 2471 EETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLED-TRDRMYQMDIQ 2529 Query: 195 YTRKRY 212 +RY Sbjct: 2530 QELQRY 2535
>YMI4_YEAST (Q04521) Hypothetical protein YML084W precursor| Length = 102 Score = 29.6 bits (65), Expect = 7.9 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 3/33 (9%) Frame = +3 Query: 498 ISHFSSSYYLLTHNKI---LLKKYLFVDNLKQT 587 I+ F SSYY LT N LLKKY + +LKQ+ Sbjct: 49 INSFRSSYYSLTINGSTISLLKKYFLLQDLKQS 81 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,190,265 Number of Sequences: 219361 Number of extensions: 1592612 Number of successful extensions: 3941 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 3752 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3852 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
