| Clone Name | basd27k20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK058226.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-H07, full insert sequence Length = 847 Score = 240 bits (121), Expect = 3e-60 Identities = 273/323 (84%), Gaps = 3/323 (0%) Strand = Plus / Plus Query: 6 aacatgctggatttcgcgttcccctatctattacagttcatccgtgagtacacaagcaag 65 |||||| |||| || || ||||||||||| ||||||||||| || ||||||||||||||| Sbjct: 52 aacatggtggactttgcattcccctatctgttacagttcattcgggagtacacaagcaag 111 Query: 66 gtagatgatttggtgaaggacaggatagaatcgcagaaggaagagaaagctaaagataac 125 || ||||| | |||||||||||||| ||||| ||||| |||| | |||||||| || Sbjct: 112 gttgatgagctagtgaaggacaggattgaatcacagaatgaagtaagggctaaagagaag 171 Query: 126 gaagagaaggaactagttgcgcagcagaacatgtacgctcaattgcttcctctggccttg 185 ||||| || || || ||||| |||||||||||||| || |||||||||||||| |||||| Sbjct: 172 gaagaaaaagatcttgttgctcagcagaacatgtatgcccaattgcttcctcttgccttg 231 Query: 186 cctgctccgcctggtatgatgggcggtccgccacctccgatgggcggaatgggcatgccg 245 |||||||| ||||||||| |||||||| ||||| || ||||| ||||||||| Sbjct: 232 cctgctcctcctggtatg---ggcggtcctccaccgccaatggggatgccgggcatgcct 288 Query: 246 ccaatgggcgggatgggtatgcctccgatgggtcccggtccaatgccagcatacgggatg 305 || |||||||| ||||| ||||||||||||||||| || || ||||||||||| |||| | Sbjct: 289 ccgatgggcggaatggggatgcctccgatgggtcctggacctatgccagcatatgggacg 348 Query: 306 cctccaatgggaagctactgagt 328 ||||||||||||||||||||||| Sbjct: 349 cctccaatgggaagctactgagt 371
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 170 bits (86), Expect = 3e-39 Identities = 157/180 (87%), Gaps = 3/180 (1%) Strand = Plus / Plus Query: 149 gcagaacatgtacgctcaattgcttcctctggccttgcctgctccgcctggtatgatggg 208 |||||||||||| || |||||||||||||| |||||||||||||| ||||||||| || Sbjct: 242830 gcagaacatgtatgcccaattgcttcctctcgccttgcctgctccacctggtatg---gg 242886 Query: 209 cggtccgccacctccgatgggcggaatgggcatgccgccaatgggcgggatgggtatgcc 268 |||||| ||||| || ||||| ||||||||| || |||||||| ||||| ||||| Sbjct: 242887 cggtcctccaccgccaatggggatgccgggcatgcctccgatgggcggaatggggatgcc 242946 Query: 269 tccgatgggtcccggtccaatgccagcatacgggatgcctccaatgggaagctactgagt 328 ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 242947 tccgatgggtcccggacctatgccagcatatgggatgcctccaatgggaagctactgagt 243006 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 39 cagttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcg 98 |||||||| || ||||||||||||||||| ||||| | |||||||||||||| ||||| Sbjct: 242627 cagttcattcgggagtacacaagcaaggttgatgagctagtgaaggacaggattgaatca 242686 Query: 99 cagaaggaag 108 ||||| |||| Sbjct: 242687 cagaatgaag 242696
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 170 bits (86), Expect = 3e-39 Identities = 157/180 (87%), Gaps = 3/180 (1%) Strand = Plus / Plus Query: 149 gcagaacatgtacgctcaattgcttcctctggccttgcctgctccgcctggtatgatggg 208 |||||||||||| || |||||||||||||| |||||||||||||| ||||||||| || Sbjct: 242830 gcagaacatgtatgcccaattgcttcctctcgccttgcctgctccacctggtatg---gg 242886 Query: 209 cggtccgccacctccgatgggcggaatgggcatgccgccaatgggcgggatgggtatgcc 268 |||||| ||||| || ||||| ||||||||| || |||||||| ||||| ||||| Sbjct: 242887 cggtcctccaccgccaatggggatgccgggcatgcctccgatgggcggaatggggatgcc 242946 Query: 269 tccgatgggtcccggtccaatgccagcatacgggatgcctccaatgggaagctactgagt 328 ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 242947 tccgatgggtcccggacctatgccagcatatgggatgcctccaatgggaagctactgagt 243006 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 39 cagttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcg 98 |||||||| || ||||||||||||||||| ||||| | |||||||||||||| ||||| Sbjct: 242627 cagttcattcgggagtacacaagcaaggttgatgagctagtgaaggacaggattgaatca 242686 Query: 99 cagaaggaag 108 ||||| |||| Sbjct: 242687 cagaatgaag 242696
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 170 bits (86), Expect = 3e-39 Identities = 157/180 (87%), Gaps = 3/180 (1%) Strand = Plus / Minus Query: 149 gcagaacatgtacgctcaattgcttcctctggccttgcctgctccgcctggtatgatggg 208 |||||||||||| || |||||||||||||| |||||||||||||| ||||||||| || Sbjct: 62163 gcagaacatgtatgcccaattgcttcctctcgccttgcctgctccacctggtatg---gg 62107 Query: 209 cggtccgccacctccgatgggcggaatgggcatgccgccaatgggcgggatgggtatgcc 268 |||||| ||||| || ||||| ||||||||| || |||||||| ||||| ||||| Sbjct: 62106 cggtcctccaccgccaatggggatgccgggcatgcctccgatgggcggaatggggatgcc 62047 Query: 269 tccgatgggtcccggtccaatgccagcatacgggatgcctccaatgggaagctactgagt 328 ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 62046 tccgatgggtcccggacctatgccagcatatgggatgcctccaatgggaagctactgagt 61987 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 39 cagttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcg 98 |||||||| || ||||||||||||||||| ||||| | |||||||||||||| ||||| Sbjct: 62366 cagttcattcgggagtacacaagcaaggttgatgagctagtgaaggacaggattgaatca 62307 Query: 99 cagaaggaag 108 ||||| |||| Sbjct: 62306 cagaatgaag 62297
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 163 bits (82), Expect = 6e-37 Identities = 156/180 (86%), Gaps = 3/180 (1%) Strand = Plus / Plus Query: 149 gcagaacatgtacgctcaattgcttcctctggccttgcctgctccgcctggtatgatggg 208 |||||||||||| || |||||||||||||| |||||||||||||| ||||||||| || Sbjct: 258221 gcagaacatgtatgcccaattgcttcctcttgccttgcctgctcctcctggtatg---gg 258277 Query: 209 cggtccgccacctccgatgggcggaatgggcatgccgccaatgggcgggatgggtatgcc 268 |||||| ||||| || ||||| ||||||||| || |||||||| ||||| ||||| Sbjct: 258278 cggtcctccaccgccaatggggatgccgggcatgcctccgatgggcggaatggggatgcc 258337 Query: 269 tccgatgggtcccggtccaatgccagcatacgggatgcctccaatgggaagctactgagt 328 |||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 258338 tccgatgggtcctggacctatgccagcatatgggatgcctccaatgggaagctactgagt 258397 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 39 cagttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcg 98 |||||||| || ||||||||||||||||| ||||| | |||||||||||||| ||||| Sbjct: 258021 cagttcattcgggagtacacaagcaaggttgatgagctagtgaaggacaggattgaatca 258080 Query: 99 cagaaggaag 108 ||||| |||| Sbjct: 258081 cagaatgaag 258090
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 163 bits (82), Expect = 6e-37 Identities = 156/180 (86%), Gaps = 3/180 (1%) Strand = Plus / Plus Query: 149 gcagaacatgtacgctcaattgcttcctctggccttgcctgctccgcctggtatgatggg 208 |||||||||||| || |||||||||||||| |||||||||||||| ||||||||| || Sbjct: 258221 gcagaacatgtatgcccaattgcttcctcttgccttgcctgctcctcctggtatg---gg 258277 Query: 209 cggtccgccacctccgatgggcggaatgggcatgccgccaatgggcgggatgggtatgcc 268 |||||| ||||| || ||||| ||||||||| || |||||||| ||||| ||||| Sbjct: 258278 cggtcctccaccgccaatggggatgccgggcatgcctccgatgggcggaatggggatgcc 258337 Query: 269 tccgatgggtcccggtccaatgccagcatacgggatgcctccaatgggaagctactgagt 328 |||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 258338 tccgatgggtcctggacctatgccagcatatgggatgcctccaatgggaagctactgagt 258397 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 39 cagttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcg 98 |||||||| || ||||||||||||||||| ||||| | |||||||||||||| ||||| Sbjct: 258021 cagttcattcgggagtacacaagcaaggttgatgagctagtgaaggacaggattgaatca 258080 Query: 99 cagaaggaag 108 ||||| |||| Sbjct: 258081 cagaatgaag 258090
>emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb0068K19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 96667 Score = 163 bits (82), Expect = 6e-37 Identities = 156/180 (86%), Gaps = 3/180 (1%) Strand = Plus / Minus Query: 149 gcagaacatgtacgctcaattgcttcctctggccttgcctgctccgcctggtatgatggg 208 |||||||||||| || |||||||||||||| |||||||||||||| ||||||||| || Sbjct: 17035 gcagaacatgtatgcccaattgcttcctcttgccttgcctgctcctcctggtatg---gg 16979 Query: 209 cggtccgccacctccgatgggcggaatgggcatgccgccaatgggcgggatgggtatgcc 268 |||||| ||||| || ||||| ||||||||| || |||||||| ||||| ||||| Sbjct: 16978 cggtcctccaccgccaatggggatgccgggcatgcctccgatgggcggaatggggatgcc 16919 Query: 269 tccgatgggtcccggtccaatgccagcatacgggatgcctccaatgggaagctactgagt 328 |||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 16918 tccgatgggtcctggacctatgccagcatatgggatgcctccaatgggaagctactgagt 16859 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 39 cagttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcg 98 |||||||| || ||||||||||||||||| ||||| | |||||||||||||| ||||| Sbjct: 17235 cagttcattcgggagtacacaagcaaggttgatgagctagtgaaggacaggattgaatca 17176 Query: 99 cagaaggaag 108 ||||| |||| Sbjct: 17175 cagaatgaag 17166
>gb|BT018302.1| Zea mays clone EL01T0206E01.c mRNA sequence Length = 1090 Score = 111 bits (56), Expect = 2e-21 Identities = 204/251 (81%), Gaps = 3/251 (1%) Strand = Plus / Plus Query: 6 aacatgctggatttcgcgttcccctatctattacagttcatccgtgagtacacaagcaag 65 |||||| |||| || || ||||| || || || |||||||| ||||| ||||| |||||| Sbjct: 522 aacatgatggactttgccttcccgtacctgttgcagttcattcgtgaatacactagcaag 581 Query: 66 gtagatgatttggtgaaggacaggatagaatcgcagaaggaagagaaagctaaagataac 125 || |||||||| |||||||||| ||| || |||||||||||||| | ||| ||||| || Sbjct: 582 gtggatgatttagtgaaggacaagattgagtcgcagaaggaagaaagagccaaagagaag 641 Query: 126 gaagagaaggaactagttgcgcagcagaacatgtacgctcaattgcttcctctggccttg 185 || ||||| || || || || |||||||||||||| || || |||||||||| || ||| Sbjct: 642 gaggagaaagaccttgtggctcagcagaacatgtatgcacagctgcttcctctcgctttg 701 Query: 186 cctgctccgcc--tg-gtatgatgggcggtccgccacctccgatgggcggaatgggcatg 242 || || ||||| || | ||||| || || ||||||||||||||||||||||||||| Sbjct: 702 cccgccccgccaatgcctggcatgggtggccctccacctccgatgggcggaatgggcatg 761 Query: 243 ccgccaatggg 253 || || ||||| Sbjct: 762 cctccgatggg 772 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Plus Query: 249 atgggcgggatgggtatgcctccgatgggtcccggtccaatgccagcatacgggatgcct 308 |||||||| ||||| ||||||||||||||| || |||||||||| |||||||| Sbjct: 744 atgggcggaatgggcatgcctccgatgggtatgccgccgatgccagcatttgggatgcca 803 Query: 309 ccaatgggaagctactga 326 || ||||||||||||||| Sbjct: 804 ccgatgggaagctactga 821
>gb|BT016858.1| Zea mays clone Contig691 mRNA sequence Length = 1598 Score = 111 bits (56), Expect = 2e-21 Identities = 204/251 (81%), Gaps = 3/251 (1%) Strand = Plus / Plus Query: 6 aacatgctggatttcgcgttcccctatctattacagttcatccgtgagtacacaagcaag 65 |||||| |||| || || ||||| || || || |||||||| ||||| ||||| |||||| Sbjct: 1040 aacatgatggactttgccttcccgtacctgttgcagttcattcgtgaatacactagcaag 1099 Query: 66 gtagatgatttggtgaaggacaggatagaatcgcagaaggaagagaaagctaaagataac 125 || |||||||| |||||||||| ||| || |||||||||||||| | ||| ||||| || Sbjct: 1100 gtggatgatttagtgaaggacaagattgagtcgcagaaggaagaaagagccaaagagaag 1159 Query: 126 gaagagaaggaactagttgcgcagcagaacatgtacgctcaattgcttcctctggccttg 185 || ||||| || || || || |||||||||||||| || || |||||||||| || ||| Sbjct: 1160 gaggagaaagaccttgtggctcagcagaacatgtatgcacagctgcttcctctcgctttg 1219 Query: 186 cctgctccgcc--tg-gtatgatgggcggtccgccacctccgatgggcggaatgggcatg 242 || || ||||| || | ||||| || || ||||||||||||||||||||||||||| Sbjct: 1220 cccgccccgccaatgcctggcatgggtggccctccacctccgatgggcggaatgggcatg 1279 Query: 243 ccgccaatggg 253 || || ||||| Sbjct: 1280 cctccgatggg 1290 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Plus Query: 249 atgggcgggatgggtatgcctccgatgggtcccggtccaatgccagcatacgggatgcct 308 |||||||| ||||| ||||||||||||||| || |||||||||| |||||||| Sbjct: 1262 atgggcggaatgggcatgcctccgatgggtatgccgccgatgccagcatttgggatgcca 1321 Query: 309 ccaatgggaagctactga 326 || ||||||||||||||| Sbjct: 1322 ccgatgggaagctactga 1339
>gb|AY103752.1| Zea mays PCO092520 mRNA sequence Length = 1767 Score = 111 bits (56), Expect = 2e-21 Identities = 204/251 (81%), Gaps = 3/251 (1%) Strand = Plus / Plus Query: 6 aacatgctggatttcgcgttcccctatctattacagttcatccgtgagtacacaagcaag 65 |||||| |||| || || ||||| || || || |||||||| ||||| ||||| |||||| Sbjct: 1134 aacatgatggactttgccttcccgtacctgttgcagttcattcgtgaatacactagcaag 1193 Query: 66 gtagatgatttggtgaaggacaggatagaatcgcagaaggaagagaaagctaaagataac 125 || |||||||| |||||||||| ||| || |||||||||||||| | ||| ||||| || Sbjct: 1194 gtggatgatttagtgaaggacaagattgagtcgcagaaggaagaaagagccaaagagaag 1253 Query: 126 gaagagaaggaactagttgcgcagcagaacatgtacgctcaattgcttcctctggccttg 185 || ||||| || || || || |||||||||||||| || || |||||||||| || ||| Sbjct: 1254 gaggagaaagaccttgtggctcagcagaacatgtatgcacagctgcttcctctcgctttg 1313 Query: 186 cctgctccgcc--tg-gtatgatgggcggtccgccacctccgatgggcggaatgggcatg 242 || || ||||| || | ||||| || || ||||||||||||||||||||||||||| Sbjct: 1314 cccgccccgccaatgcctggcatgggtggccctccacctccgatgggcggaatgggcatg 1373 Query: 243 ccgccaatggg 253 || || ||||| Sbjct: 1374 cctccgatggg 1384 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Plus Query: 249 atgggcgggatgggtatgcctccgatgggtcccggtccaatgccagcatacgggatgcct 308 |||||||| ||||| ||||||||||||||| || |||||||||| |||||||| Sbjct: 1356 atgggcggaatgggcatgcctccgatgggtatgccgccgatgccagcatttgggatgcca 1415 Query: 309 ccaatgggaagctactga 326 || ||||||||||||||| Sbjct: 1416 ccgatgggaagctactga 1433
>gb|U42608.1|GMU42608 Glycine max clathrin heavy chain mRNA, complete cds Length = 5537 Score = 83.8 bits (42), Expect = 5e-13 Identities = 129/158 (81%) Strand = Plus / Plus Query: 39 cagttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcg 98 ||||| |||||||||||||| |||| || ||||| |||||||||| | |||||| || Sbjct: 4942 cagtttatccgtgagtacactggcaaagttgatgaactggtgaaggataaaatagaagcg 5001 Query: 99 cagaaggaagagaaagctaaagataacgaagagaaggaactagttgcgcagcagaacatg 158 ||||| ||| |||||||||||| | |||||||||||| || |||| || ||||| ||| Sbjct: 5002 cagaaccaagtgaaagctaaagagcaagaagagaaggaagtaattgctcaacagaatatg 5061 Query: 159 tacgctcaattgcttcctctggccttgcctgctccgcc 196 || ||||| ||| | ||||| || |||||||| ||||| Sbjct: 5062 tatgctcagttgttgcctcttgctttgcctgcaccgcc 5099
>gb|AY960125.1| Medicago truncatula geranylgeranyl reductase mRNA, complete cds Length = 2242 Score = 63.9 bits (32), Expect = 4e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 115 ctaaagataacgaagagaaggaactagttgcgcagcagaacatgtacgctcaattgcttc 174 ||||||| || ||||| ||||| ||||||| |||||||||||||| ||||||||| | | Sbjct: 1689 ctaaagagaaagaagaaaaggacgtagttgcacagcagaacatgtatgctcaattgttac 1748 Query: 175 ctctggccttgcctgc 190 |||| || |||||||| Sbjct: 1749 ctcttgctttgcctgc 1764
>dbj|AP004467.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT06K11, TM0002, complete sequence Length = 106023 Score = 50.1 bits (25), Expect = 0.006 Identities = 79/97 (81%) Strand = Plus / Plus Query: 40 agttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcgc 99 |||| |||||||||||||| |||| || ||||| ||||||||||||| || ||| | | Sbjct: 22288 agtttatccgtgagtacactggcaaagttgatgaattggtgaaggacaaaattgaagcac 22347 Query: 100 agaaggaagagaaagctaaagataacgaagagaagga 136 | | |||||||| |||||||| || ||||| ||||| Sbjct: 22348 aaatcgaagagaaggctaaagagaaagaagaaaagga 22384 Score = 44.1 bits (22), Expect = 0.40 Identities = 37/42 (88%) Strand = Plus / Plus Query: 149 gcagaacatgtacgctcaattgcttcctctggccttgcctgc 190 |||||||||||| ||||||||| | ||||| || |||||||| Sbjct: 22588 gcagaacatgtatgctcaattgttgcctcttgctttgcctgc 22629
>emb|AL389887.7| Human DNA sequence from clone RP11-54F22 on chromosome Xq21.1-21.31 Contains the 5' end of the RPS6KA6 gene for ribosomal protein S6 kinase (90kD) polypeptide 6 and a CpG island, complete sequence Length = 143220 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 115 ctaaagataacgaagagaaggaa 137 ||||||||||||||||||||||| Sbjct: 34926 ctaaagataacgaagagaaggaa 34948
>gb|AC144729.29| Medicago truncatula clone mth2-15j6, complete sequence Length = 113550 Score = 44.1 bits (22), Expect = 0.40 Identities = 37/42 (88%) Strand = Plus / Plus Query: 149 gcagaacatgtacgctcaattgcttcctctggccttgcctgc 190 |||||||||||| ||||||||| | ||||| || |||||||| Sbjct: 22059 gcagaacatgtatgctcaattgttacctcttgctttgcctgc 22100
>gb|AC142498.21| Medicago truncatula clone mth2-24a18, complete sequence Length = 114956 Score = 42.1 bits (21), Expect = 1.6 Identities = 90/113 (79%) Strand = Plus / Plus Query: 40 agttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcgc 99 |||| |||||||||||||| |||| || ||||| | || ||| ||| || ||||| | Sbjct: 65565 agtttatccgtgagtacactggcaaagttgatgaacttgttaagcacaaaattgaatccc 65624 Query: 100 agaaggaagagaaagctaaagataacgaagagaaggaactagttgcgcagcag 152 |||| |||| ||| |||||||| | |||||||||||| || |||| |||||| Sbjct: 65625 agaatgaagtgaaggctaaagaacaagaagagaaggaagtaattgcacagcag 65677
>gb|AC006058.1| Homo sapiens 3p22-7 PAC RPCI4-555D20 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 147146 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 ggagggaggaaatcatgagaa 411 ||||||||||||||||||||| Sbjct: 104343 ggagggaggaaatcatgagaa 104363
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 gatgggcggaatgggcatgcc 244 ||||||||||||||||||||| Sbjct: 430866 gatgggcggaatgggcatgcc 430846 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Minus Query: 225 atgggcggaatgggcatgccgccaatgggcgggatgggtatgcct 269 |||||||||||||||||||| |||||||| ||||| |||||| Sbjct: 430889 atgggcggaatgggcatgcctgggatgggcggaatgggcatgcct 430845
>emb|CT573029.5| M.truncatula DNA sequence from clone MTH2-67H11 on chromosome 3, complete sequence Length = 152399 Score = 42.1 bits (21), Expect = 1.6 Identities = 90/113 (79%) Strand = Plus / Minus Query: 40 agttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcgc 99 |||| |||||||||||||| |||| || ||||| | || ||| ||| || ||||| | Sbjct: 44812 agtttatccgtgagtacactggcaaagttgatgaacttgttaagcacaaaattgaatccc 44753 Query: 100 agaaggaagagaaagctaaagataacgaagagaaggaactagttgcgcagcag 152 |||| |||| ||| |||||||| | |||||||||||| || |||| |||||| Sbjct: 44752 agaatgaagtgaaggctaaagaacaagaagagaaggaagtaattgcacagcag 44700
>emb|AL512414.2|CNS07EFC Human chromosome 14 DNA sequence BAC R-663F5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 158357 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 tgcttcctctggccttgcctg 189 ||||||||||||||||||||| Sbjct: 71516 tgcttcctctggccttgcctg 71536
>emb|CT009510.7| Mouse DNA sequence from clone RP23-47H16 on chromosome 14, complete sequence Length = 209623 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 aatcgcagaaggaagagaaa 113 |||||||||||||||||||| Sbjct: 80776 aatcgcagaaggaagagaaa 80757
>gb|AC013285.10| Homo sapiens chromosome 10 clone RP11-143D9, complete sequence Length = 202500 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aagataacgaagagaaggaa 137 |||||||||||||||||||| Sbjct: 182657 aagataacgaagagaaggaa 182676
>gb|AY142078.1| Borrelia burgdorferi strain Sh-2-82 plasmid cp18-1 Erp43 protein (erp43) gene, complete cds Length = 1199 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gaagagaaagctaaagataa 124 |||||||||||||||||||| Sbjct: 555 gaagagaaagctaaagataa 574
>emb|CR855994.1| Wallaby DNA sequence from clone MEKBa-69G12, complete sequence Length = 174698 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 agatgatgtgaaatatctca 382 |||||||||||||||||||| Sbjct: 163454 agatgatgtgaaatatctca 163435
>emb|BX572091.1| Prochlorococcus marinus MED4 complete genome; segment 2/5 Length = 349082 Score = 40.1 bits (20), Expect = 6.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 225 atgggcggaatgggcatgccgccaatgggcgggatgggtatgcc 268 ||||| |||||||| ||||| ||||||||| ||||||||||| Sbjct: 80944 atgggtggaatgggtatgccaggaatgggcggcatgggtatgcc 80901 Score = 40.1 bits (20), Expect = 6.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 225 atgggcggaatgggcatgccgccaatgggcgggatgggtatgcc 268 |||||||| ||||| ||||| ||||||||| ||||||||||| Sbjct: 80920 atgggcggcatgggtatgccaggaatgggcggcatgggtatgcc 80877
>emb|BX649546.11| Zebrafish DNA sequence from clone DKEY-27C18 in linkage group 3, complete sequence Length = 124731 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 atgagaatgtatcccagaga 424 |||||||||||||||||||| Sbjct: 11901 atgagaatgtatcccagaga 11920
>gb|AC024603.7| Homo sapiens chromosome 10 clone RP11-325D15, complete sequence Length = 129243 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 aagataacgaagagaaggaa 137 |||||||||||||||||||| Sbjct: 40732 aagataacgaagagaaggaa 40713
>ref|XM_318677.2| Anopheles gambiae str. PEST ENSANGP00000004639 (ENSANGG00000003636), partial mRNA Length = 3264 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 atgggcggtccgccacctcc 223 |||||||||||||||||||| Sbjct: 1675 atgggcggtccgccacctcc 1694
>emb|AL391158.5|CNS06C83 Human chromosome 14 DNA sequence BAC R-560O13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 202792 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 tagaatcgcagaaggaagagaaag 114 |||||| ||||||||||||||||| Sbjct: 76053 tagaatagcagaaggaagagaaag 76030
>gb|AF077603.1|AF077603 Borrelia burgdorferi strain 297 plasmid-encoded ElpA2 protein (elpA2) gene, complete cds; and unknown genes Length = 3468 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gaagagaaagctaaagataa 124 |||||||||||||||||||| Sbjct: 1609 gaagagaaagctaaagataa 1628
>emb|AL935160.11| Zebrafish DNA sequence from clone CH211-184C7 in linkage group 12, complete sequence Length = 140401 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gatgggcggaatgggcatgc 243 |||||||||||||||||||| Sbjct: 32605 gatgggcggaatgggcatgc 32624
>emb|CR456684.10| Zebrafish DNA sequence from clone DKEY-46I8 in linkage group 12, complete sequence Length = 262809 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gatgggcggaatgggcatgc 243 |||||||||||||||||||| Sbjct: 198579 gatgggcggaatgggcatgc 198560
>gb|DQ023454.1| Uranomys ruddi recombination activating protein 1 (Rag1) gene, partial cds Length = 2983 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 ctctggccttgcctgctccg 194 |||||||||||||||||||| Sbjct: 1503 ctctggccttgcctgctccg 1522
>dbj|AP006415.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT37I11, TM0302a, complete sequence Length = 96704 Score = 40.1 bits (20), Expect = 6.2 Identities = 74/92 (80%) Strand = Plus / Minus Query: 46 tccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcgcagaagg 105 |||| |||||||| |||| || ||||| |||||||||||| || ||| | ||||| | Sbjct: 33969 tccgcgagtacactggcaaagttgatgaactggtgaaggacaaaattgaagcacagaaag 33910 Query: 106 aagagaaagctaaagataacgaagagaaggaa 137 ||| ||| |||||||| | |||||||||||| Sbjct: 33909 aagtgaaggctaaagaacaagaagagaaggaa 33878 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,498,878 Number of Sequences: 3902068 Number of extensions: 3498878 Number of successful extensions: 65759 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65557 Number of HSP's gapped (non-prelim): 193 length of query: 460 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 438 effective length of database: 17,147,199,772 effective search space: 7510473500136 effective search space used: 7510473500136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)