ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27k20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK058226.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 3e-60
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 170 3e-39
4emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 170 3e-39
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 163 6e-37
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 163 6e-37
7emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb... 163 6e-37
8gb|BT018302.1| Zea mays clone EL01T0206E01.c mRNA sequence 111 2e-21
9gb|BT016858.1| Zea mays clone Contig691 mRNA sequence 111 2e-21
10gb|AY103752.1| Zea mays PCO092520 mRNA sequence 111 2e-21
11gb|U42608.1|GMU42608 Glycine max clathrin heavy chain mRNA, comp... 84 5e-13
12gb|AY960125.1| Medicago truncatula geranylgeranyl reductase mRNA... 64 4e-07
13dbj|AP004467.1| Lotus japonicus genomic DNA, chromosome 1, clone... 50 0.006
14emb|AL389887.7| Human DNA sequence from clone RP11-54F22 on chro... 46 0.10
15gb|AC144729.29| Medicago truncatula clone mth2-15j6, complete se... 44 0.40
16gb|AC142498.21| Medicago truncatula clone mth2-24a18, complete s... 42 1.6
17gb|AC006058.1| Homo sapiens 3p22-7 PAC RPCI4-555D20 (Roswell Par... 42 1.6
18gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 42 1.6
19emb|CT573029.5| M.truncatula DNA sequence from clone MTH2-67H11 ... 42 1.6
20emb|AL512414.2|CNS07EFC Human chromosome 14 DNA sequence BAC R-6... 42 1.6
21emb|CT009510.7| Mouse DNA sequence from clone RP23-47H16 on chro... 40 6.2
22gb|AC013285.10| Homo sapiens chromosome 10 clone RP11-143D9, com... 40 6.2
23gb|AY142078.1| Borrelia burgdorferi strain Sh-2-82 plasmid cp18-... 40 6.2
24emb|CR855994.1| Wallaby DNA sequence from clone MEKBa-69G12, com... 40 6.2
25emb|BX572091.1| Prochlorococcus marinus MED4 complete genome; se... 40 6.2
26emb|BX649546.11| Zebrafish DNA sequence from clone DKEY-27C18 in... 40 6.2
27gb|AC024603.7| Homo sapiens chromosome 10 clone RP11-325D15, com... 40 6.2
28ref|XM_318677.2| Anopheles gambiae str. PEST ENSANGP00000004639 ... 40 6.2
29emb|AL391158.5|CNS06C83 Human chromosome 14 DNA sequence BAC R-5... 40 6.2
30gb|AF077603.1|AF077603 Borrelia burgdorferi strain 297 plasmid-e... 40 6.2
31emb|AL935160.11| Zebrafish DNA sequence from clone CH211-184C7 i... 40 6.2
32emb|CR456684.10| Zebrafish DNA sequence from clone DKEY-46I8 in ... 40 6.2
33gb|DQ023454.1| Uranomys ruddi recombination activating protein 1... 40 6.2
34dbj|AP006415.1| Lotus japonicus genomic DNA, chromosome 6, clone... 40 6.2

>dbj|AK058226.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-H07, full
           insert sequence
          Length = 847

 Score =  240 bits (121), Expect = 3e-60
 Identities = 273/323 (84%), Gaps = 3/323 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   aacatgctggatttcgcgttcccctatctattacagttcatccgtgagtacacaagcaag 65
           |||||| |||| || || ||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 52  aacatggtggactttgcattcccctatctgttacagttcattcgggagtacacaagcaag 111

                                                                       
Query: 66  gtagatgatttggtgaaggacaggatagaatcgcagaaggaagagaaagctaaagataac 125
           || |||||  | |||||||||||||| ||||| ||||| ||||  |  |||||||| || 
Sbjct: 112 gttgatgagctagtgaaggacaggattgaatcacagaatgaagtaagggctaaagagaag 171

                                                                       
Query: 126 gaagagaaggaactagttgcgcagcagaacatgtacgctcaattgcttcctctggccttg 185
           ||||| || || || ||||| |||||||||||||| || |||||||||||||| ||||||
Sbjct: 172 gaagaaaaagatcttgttgctcagcagaacatgtatgcccaattgcttcctcttgccttg 231

                                                                       
Query: 186 cctgctccgcctggtatgatgggcggtccgccacctccgatgggcggaatgggcatgccg 245
           |||||||| |||||||||   |||||||| ||||| || |||||      ||||||||| 
Sbjct: 232 cctgctcctcctggtatg---ggcggtcctccaccgccaatggggatgccgggcatgcct 288

                                                                       
Query: 246 ccaatgggcgggatgggtatgcctccgatgggtcccggtccaatgccagcatacgggatg 305
           || |||||||| ||||| ||||||||||||||||| || || ||||||||||| |||| |
Sbjct: 289 ccgatgggcggaatggggatgcctccgatgggtcctggacctatgccagcatatgggacg 348

                                  
Query: 306 cctccaatgggaagctactgagt 328
           |||||||||||||||||||||||
Sbjct: 349 cctccaatgggaagctactgagt 371



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score =  170 bits (86), Expect = 3e-39
 Identities = 157/180 (87%), Gaps = 3/180 (1%)
 Strand = Plus / Plus

                                                                          
Query: 149    gcagaacatgtacgctcaattgcttcctctggccttgcctgctccgcctggtatgatggg 208
              |||||||||||| || |||||||||||||| |||||||||||||| |||||||||   ||
Sbjct: 242830 gcagaacatgtatgcccaattgcttcctctcgccttgcctgctccacctggtatg---gg 242886

                                                                          
Query: 209    cggtccgccacctccgatgggcggaatgggcatgccgccaatgggcgggatgggtatgcc 268
              |||||| ||||| || |||||      ||||||||| || |||||||| ||||| |||||
Sbjct: 242887 cggtcctccaccgccaatggggatgccgggcatgcctccgatgggcggaatggggatgcc 242946

                                                                          
Query: 269    tccgatgggtcccggtccaatgccagcatacgggatgcctccaatgggaagctactgagt 328
              ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 242947 tccgatgggtcccggacctatgccagcatatgggatgcctccaatgggaagctactgagt 243006



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                          
Query: 39     cagttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcg 98
              |||||||| || ||||||||||||||||| |||||  | |||||||||||||| ||||| 
Sbjct: 242627 cagttcattcgggagtacacaagcaaggttgatgagctagtgaaggacaggattgaatca 242686

                        
Query: 99     cagaaggaag 108
              ||||| ||||
Sbjct: 242687 cagaatgaag 242696



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  170 bits (86), Expect = 3e-39
 Identities = 157/180 (87%), Gaps = 3/180 (1%)
 Strand = Plus / Plus

                                                                          
Query: 149    gcagaacatgtacgctcaattgcttcctctggccttgcctgctccgcctggtatgatggg 208
              |||||||||||| || |||||||||||||| |||||||||||||| |||||||||   ||
Sbjct: 242830 gcagaacatgtatgcccaattgcttcctctcgccttgcctgctccacctggtatg---gg 242886

                                                                          
Query: 209    cggtccgccacctccgatgggcggaatgggcatgccgccaatgggcgggatgggtatgcc 268
              |||||| ||||| || |||||      ||||||||| || |||||||| ||||| |||||
Sbjct: 242887 cggtcctccaccgccaatggggatgccgggcatgcctccgatgggcggaatggggatgcc 242946

                                                                          
Query: 269    tccgatgggtcccggtccaatgccagcatacgggatgcctccaatgggaagctactgagt 328
              ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 242947 tccgatgggtcccggacctatgccagcatatgggatgcctccaatgggaagctactgagt 243006



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                          
Query: 39     cagttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcg 98
              |||||||| || ||||||||||||||||| |||||  | |||||||||||||| ||||| 
Sbjct: 242627 cagttcattcgggagtacacaagcaaggttgatgagctagtgaaggacaggattgaatca 242686

                        
Query: 99     cagaaggaag 108
              ||||| ||||
Sbjct: 242687 cagaatgaag 242696



to top

>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 160673

 Score =  170 bits (86), Expect = 3e-39
 Identities = 157/180 (87%), Gaps = 3/180 (1%)
 Strand = Plus / Minus

                                                                         
Query: 149   gcagaacatgtacgctcaattgcttcctctggccttgcctgctccgcctggtatgatggg 208
             |||||||||||| || |||||||||||||| |||||||||||||| |||||||||   ||
Sbjct: 62163 gcagaacatgtatgcccaattgcttcctctcgccttgcctgctccacctggtatg---gg 62107

                                                                         
Query: 209   cggtccgccacctccgatgggcggaatgggcatgccgccaatgggcgggatgggtatgcc 268
             |||||| ||||| || |||||      ||||||||| || |||||||| ||||| |||||
Sbjct: 62106 cggtcctccaccgccaatggggatgccgggcatgcctccgatgggcggaatggggatgcc 62047

                                                                         
Query: 269   tccgatgggtcccggtccaatgccagcatacgggatgcctccaatgggaagctactgagt 328
             ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 62046 tccgatgggtcccggacctatgccagcatatgggatgcctccaatgggaagctactgagt 61987



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                         
Query: 39    cagttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcg 98
             |||||||| || ||||||||||||||||| |||||  | |||||||||||||| ||||| 
Sbjct: 62366 cagttcattcgggagtacacaagcaaggttgatgagctagtgaaggacaggattgaatca 62307

                       
Query: 99    cagaaggaag 108
             ||||| ||||
Sbjct: 62306 cagaatgaag 62297



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score =  163 bits (82), Expect = 6e-37
 Identities = 156/180 (86%), Gaps = 3/180 (1%)
 Strand = Plus / Plus

                                                                          
Query: 149    gcagaacatgtacgctcaattgcttcctctggccttgcctgctccgcctggtatgatggg 208
              |||||||||||| || |||||||||||||| |||||||||||||| |||||||||   ||
Sbjct: 258221 gcagaacatgtatgcccaattgcttcctcttgccttgcctgctcctcctggtatg---gg 258277

                                                                          
Query: 209    cggtccgccacctccgatgggcggaatgggcatgccgccaatgggcgggatgggtatgcc 268
              |||||| ||||| || |||||      ||||||||| || |||||||| ||||| |||||
Sbjct: 258278 cggtcctccaccgccaatggggatgccgggcatgcctccgatgggcggaatggggatgcc 258337

                                                                          
Query: 269    tccgatgggtcccggtccaatgccagcatacgggatgcctccaatgggaagctactgagt 328
              |||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 258338 tccgatgggtcctggacctatgccagcatatgggatgcctccaatgggaagctactgagt 258397



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                          
Query: 39     cagttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcg 98
              |||||||| || ||||||||||||||||| |||||  | |||||||||||||| ||||| 
Sbjct: 258021 cagttcattcgggagtacacaagcaaggttgatgagctagtgaaggacaggattgaatca 258080

                        
Query: 99     cagaaggaag 108
              ||||| ||||
Sbjct: 258081 cagaatgaag 258090



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  163 bits (82), Expect = 6e-37
 Identities = 156/180 (86%), Gaps = 3/180 (1%)
 Strand = Plus / Plus

                                                                          
Query: 149    gcagaacatgtacgctcaattgcttcctctggccttgcctgctccgcctggtatgatggg 208
              |||||||||||| || |||||||||||||| |||||||||||||| |||||||||   ||
Sbjct: 258221 gcagaacatgtatgcccaattgcttcctcttgccttgcctgctcctcctggtatg---gg 258277

                                                                          
Query: 209    cggtccgccacctccgatgggcggaatgggcatgccgccaatgggcgggatgggtatgcc 268
              |||||| ||||| || |||||      ||||||||| || |||||||| ||||| |||||
Sbjct: 258278 cggtcctccaccgccaatggggatgccgggcatgcctccgatgggcggaatggggatgcc 258337

                                                                          
Query: 269    tccgatgggtcccggtccaatgccagcatacgggatgcctccaatgggaagctactgagt 328
              |||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 258338 tccgatgggtcctggacctatgccagcatatgggatgcctccaatgggaagctactgagt 258397



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                          
Query: 39     cagttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcg 98
              |||||||| || ||||||||||||||||| |||||  | |||||||||||||| ||||| 
Sbjct: 258021 cagttcattcgggagtacacaagcaaggttgatgagctagtgaaggacaggattgaatca 258080

                        
Query: 99     cagaaggaag 108
              ||||| ||||
Sbjct: 258081 cagaatgaag 258090



to top

>emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb0068K19 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 96667

 Score =  163 bits (82), Expect = 6e-37
 Identities = 156/180 (86%), Gaps = 3/180 (1%)
 Strand = Plus / Minus

                                                                         
Query: 149   gcagaacatgtacgctcaattgcttcctctggccttgcctgctccgcctggtatgatggg 208
             |||||||||||| || |||||||||||||| |||||||||||||| |||||||||   ||
Sbjct: 17035 gcagaacatgtatgcccaattgcttcctcttgccttgcctgctcctcctggtatg---gg 16979

                                                                         
Query: 209   cggtccgccacctccgatgggcggaatgggcatgccgccaatgggcgggatgggtatgcc 268
             |||||| ||||| || |||||      ||||||||| || |||||||| ||||| |||||
Sbjct: 16978 cggtcctccaccgccaatggggatgccgggcatgcctccgatgggcggaatggggatgcc 16919

                                                                         
Query: 269   tccgatgggtcccggtccaatgccagcatacgggatgcctccaatgggaagctactgagt 328
             |||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 16918 tccgatgggtcctggacctatgccagcatatgggatgcctccaatgggaagctactgagt 16859



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                         
Query: 39    cagttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcg 98
             |||||||| || ||||||||||||||||| |||||  | |||||||||||||| ||||| 
Sbjct: 17235 cagttcattcgggagtacacaagcaaggttgatgagctagtgaaggacaggattgaatca 17176

                       
Query: 99    cagaaggaag 108
             ||||| ||||
Sbjct: 17175 cagaatgaag 17166



to top

>gb|BT018302.1| Zea mays clone EL01T0206E01.c mRNA sequence
          Length = 1090

 Score =  111 bits (56), Expect = 2e-21
 Identities = 204/251 (81%), Gaps = 3/251 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   aacatgctggatttcgcgttcccctatctattacagttcatccgtgagtacacaagcaag 65
           |||||| |||| || || ||||| || || || |||||||| ||||| ||||| ||||||
Sbjct: 522 aacatgatggactttgccttcccgtacctgttgcagttcattcgtgaatacactagcaag 581

                                                                       
Query: 66  gtagatgatttggtgaaggacaggatagaatcgcagaaggaagagaaagctaaagataac 125
           || |||||||| |||||||||| ||| || |||||||||||||| | ||| ||||| || 
Sbjct: 582 gtggatgatttagtgaaggacaagattgagtcgcagaaggaagaaagagccaaagagaag 641

                                                                       
Query: 126 gaagagaaggaactagttgcgcagcagaacatgtacgctcaattgcttcctctggccttg 185
           || ||||| || || || || |||||||||||||| || ||  |||||||||| || |||
Sbjct: 642 gaggagaaagaccttgtggctcagcagaacatgtatgcacagctgcttcctctcgctttg 701

                                                                       
Query: 186 cctgctccgcc--tg-gtatgatgggcggtccgccacctccgatgggcggaatgggcatg 242
           || || |||||  ||  |   ||||| || || |||||||||||||||||||||||||||
Sbjct: 702 cccgccccgccaatgcctggcatgggtggccctccacctccgatgggcggaatgggcatg 761

                      
Query: 243 ccgccaatggg 253
           || || |||||
Sbjct: 762 cctccgatggg 772



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                       
Query: 249 atgggcgggatgggtatgcctccgatgggtcccggtccaatgccagcatacgggatgcct 308
           |||||||| ||||| |||||||||||||||      || ||||||||||  |||||||| 
Sbjct: 744 atgggcggaatgggcatgcctccgatgggtatgccgccgatgccagcatttgggatgcca 803

                             
Query: 309 ccaatgggaagctactga 326
           || |||||||||||||||
Sbjct: 804 ccgatgggaagctactga 821



to top

>gb|BT016858.1| Zea mays clone Contig691 mRNA sequence
          Length = 1598

 Score =  111 bits (56), Expect = 2e-21
 Identities = 204/251 (81%), Gaps = 3/251 (1%)
 Strand = Plus / Plus

                                                                        
Query: 6    aacatgctggatttcgcgttcccctatctattacagttcatccgtgagtacacaagcaag 65
            |||||| |||| || || ||||| || || || |||||||| ||||| ||||| ||||||
Sbjct: 1040 aacatgatggactttgccttcccgtacctgttgcagttcattcgtgaatacactagcaag 1099

                                                                        
Query: 66   gtagatgatttggtgaaggacaggatagaatcgcagaaggaagagaaagctaaagataac 125
            || |||||||| |||||||||| ||| || |||||||||||||| | ||| ||||| || 
Sbjct: 1100 gtggatgatttagtgaaggacaagattgagtcgcagaaggaagaaagagccaaagagaag 1159

                                                                        
Query: 126  gaagagaaggaactagttgcgcagcagaacatgtacgctcaattgcttcctctggccttg 185
            || ||||| || || || || |||||||||||||| || ||  |||||||||| || |||
Sbjct: 1160 gaggagaaagaccttgtggctcagcagaacatgtatgcacagctgcttcctctcgctttg 1219

                                                                        
Query: 186  cctgctccgcc--tg-gtatgatgggcggtccgccacctccgatgggcggaatgggcatg 242
            || || |||||  ||  |   ||||| || || |||||||||||||||||||||||||||
Sbjct: 1220 cccgccccgccaatgcctggcatgggtggccctccacctccgatgggcggaatgggcatg 1279

                       
Query: 243  ccgccaatggg 253
            || || |||||
Sbjct: 1280 cctccgatggg 1290



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                        
Query: 249  atgggcgggatgggtatgcctccgatgggtcccggtccaatgccagcatacgggatgcct 308
            |||||||| ||||| |||||||||||||||      || ||||||||||  |||||||| 
Sbjct: 1262 atgggcggaatgggcatgcctccgatgggtatgccgccgatgccagcatttgggatgcca 1321

                              
Query: 309  ccaatgggaagctactga 326
            || |||||||||||||||
Sbjct: 1322 ccgatgggaagctactga 1339



to top

>gb|AY103752.1| Zea mays PCO092520 mRNA sequence
          Length = 1767

 Score =  111 bits (56), Expect = 2e-21
 Identities = 204/251 (81%), Gaps = 3/251 (1%)
 Strand = Plus / Plus

                                                                        
Query: 6    aacatgctggatttcgcgttcccctatctattacagttcatccgtgagtacacaagcaag 65
            |||||| |||| || || ||||| || || || |||||||| ||||| ||||| ||||||
Sbjct: 1134 aacatgatggactttgccttcccgtacctgttgcagttcattcgtgaatacactagcaag 1193

                                                                        
Query: 66   gtagatgatttggtgaaggacaggatagaatcgcagaaggaagagaaagctaaagataac 125
            || |||||||| |||||||||| ||| || |||||||||||||| | ||| ||||| || 
Sbjct: 1194 gtggatgatttagtgaaggacaagattgagtcgcagaaggaagaaagagccaaagagaag 1253

                                                                        
Query: 126  gaagagaaggaactagttgcgcagcagaacatgtacgctcaattgcttcctctggccttg 185
            || ||||| || || || || |||||||||||||| || ||  |||||||||| || |||
Sbjct: 1254 gaggagaaagaccttgtggctcagcagaacatgtatgcacagctgcttcctctcgctttg 1313

                                                                        
Query: 186  cctgctccgcc--tg-gtatgatgggcggtccgccacctccgatgggcggaatgggcatg 242
            || || |||||  ||  |   ||||| || || |||||||||||||||||||||||||||
Sbjct: 1314 cccgccccgccaatgcctggcatgggtggccctccacctccgatgggcggaatgggcatg 1373

                       
Query: 243  ccgccaatggg 253
            || || |||||
Sbjct: 1374 cctccgatggg 1384



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                        
Query: 249  atgggcgggatgggtatgcctccgatgggtcccggtccaatgccagcatacgggatgcct 308
            |||||||| ||||| |||||||||||||||      || ||||||||||  |||||||| 
Sbjct: 1356 atgggcggaatgggcatgcctccgatgggtatgccgccgatgccagcatttgggatgcca 1415

                              
Query: 309  ccaatgggaagctactga 326
            || |||||||||||||||
Sbjct: 1416 ccgatgggaagctactga 1433



to top

>gb|U42608.1|GMU42608 Glycine max clathrin heavy chain mRNA, complete cds
          Length = 5537

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 129/158 (81%)
 Strand = Plus / Plus

                                                                        
Query: 39   cagttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcg 98
            ||||| ||||||||||||||  |||| || |||||  |||||||||| |  |||||| ||
Sbjct: 4942 cagtttatccgtgagtacactggcaaagttgatgaactggtgaaggataaaatagaagcg 5001

                                                                        
Query: 99   cagaaggaagagaaagctaaagataacgaagagaaggaactagttgcgcagcagaacatg 158
            |||||  ||| ||||||||||||  | |||||||||||| || |||| || ||||| |||
Sbjct: 5002 cagaaccaagtgaaagctaaagagcaagaagagaaggaagtaattgctcaacagaatatg 5061

                                                  
Query: 159  tacgctcaattgcttcctctggccttgcctgctccgcc 196
            || ||||| ||| | ||||| || |||||||| |||||
Sbjct: 5062 tatgctcagttgttgcctcttgctttgcctgcaccgcc 5099



to top

>gb|AY960125.1| Medicago truncatula geranylgeranyl reductase mRNA, complete cds
          Length = 2242

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 65/76 (85%)
 Strand = Plus / Plus

                                                                        
Query: 115  ctaaagataacgaagagaaggaactagttgcgcagcagaacatgtacgctcaattgcttc 174
            ||||||| || ||||| |||||  ||||||| |||||||||||||| ||||||||| | |
Sbjct: 1689 ctaaagagaaagaagaaaaggacgtagttgcacagcagaacatgtatgctcaattgttac 1748

                            
Query: 175  ctctggccttgcctgc 190
            |||| || ||||||||
Sbjct: 1749 ctcttgctttgcctgc 1764



to top

>dbj|AP004467.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT06K11, TM0002,
             complete sequence
          Length = 106023

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 79/97 (81%)
 Strand = Plus / Plus

                                                                         
Query: 40    agttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcgc 99
             |||| ||||||||||||||  |||| || ||||| |||||||||||||  || ||| | |
Sbjct: 22288 agtttatccgtgagtacactggcaaagttgatgaattggtgaaggacaaaattgaagcac 22347

                                                  
Query: 100   agaaggaagagaaagctaaagataacgaagagaagga 136
             | |  |||||||| |||||||| || ||||| |||||
Sbjct: 22348 aaatcgaagagaaggctaaagagaaagaagaaaagga 22384



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 149   gcagaacatgtacgctcaattgcttcctctggccttgcctgc 190
             |||||||||||| ||||||||| | ||||| || ||||||||
Sbjct: 22588 gcagaacatgtatgctcaattgttgcctcttgctttgcctgc 22629



to top

>emb|AL389887.7| Human DNA sequence from clone RP11-54F22 on chromosome Xq21.1-21.31
             Contains the 5' end of the RPS6KA6 gene for ribosomal
             protein S6 kinase (90kD) polypeptide 6 and a CpG island,
             complete sequence
          Length = 143220

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 115   ctaaagataacgaagagaaggaa 137
             |||||||||||||||||||||||
Sbjct: 34926 ctaaagataacgaagagaaggaa 34948



to top

>gb|AC144729.29| Medicago truncatula clone mth2-15j6, complete sequence
          Length = 113550

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 149   gcagaacatgtacgctcaattgcttcctctggccttgcctgc 190
             |||||||||||| ||||||||| | ||||| || ||||||||
Sbjct: 22059 gcagaacatgtatgctcaattgttacctcttgctttgcctgc 22100



to top

>gb|AC142498.21| Medicago truncatula clone mth2-24a18, complete sequence
          Length = 114956

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 90/113 (79%)
 Strand = Plus / Plus

                                                                         
Query: 40    agttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcgc 99
             |||| ||||||||||||||  |||| || |||||  | || ||| |||  || ||||| |
Sbjct: 65565 agtttatccgtgagtacactggcaaagttgatgaacttgttaagcacaaaattgaatccc 65624

                                                                  
Query: 100   agaaggaagagaaagctaaagataacgaagagaaggaactagttgcgcagcag 152
             |||| |||| ||| ||||||||  | |||||||||||| || |||| ||||||
Sbjct: 65625 agaatgaagtgaaggctaaagaacaagaagagaaggaagtaattgcacagcag 65677



to top

>gb|AC006058.1| Homo sapiens 3p22-7 PAC RPCI4-555D20 (Roswell Park Cancer Institute Human
              PAC Library) complete sequence
          Length = 147146

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 391    ggagggaggaaatcatgagaa 411
              |||||||||||||||||||||
Sbjct: 104343 ggagggaggaaatcatgagaa 104363



to top

>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 224    gatgggcggaatgggcatgcc 244
              |||||||||||||||||||||
Sbjct: 430866 gatgggcggaatgggcatgcc 430846



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                           
Query: 225    atgggcggaatgggcatgccgccaatgggcgggatgggtatgcct 269
              ||||||||||||||||||||    |||||||| ||||| ||||||
Sbjct: 430889 atgggcggaatgggcatgcctgggatgggcggaatgggcatgcct 430845



to top

>emb|CT573029.5| M.truncatula DNA sequence from clone MTH2-67H11 on chromosome 3,
             complete sequence
          Length = 152399

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 90/113 (79%)
 Strand = Plus / Minus

                                                                         
Query: 40    agttcatccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcgc 99
             |||| ||||||||||||||  |||| || |||||  | || ||| |||  || ||||| |
Sbjct: 44812 agtttatccgtgagtacactggcaaagttgatgaacttgttaagcacaaaattgaatccc 44753

                                                                  
Query: 100   agaaggaagagaaagctaaagataacgaagagaaggaactagttgcgcagcag 152
             |||| |||| ||| ||||||||  | |||||||||||| || |||| ||||||
Sbjct: 44752 agaatgaagtgaaggctaaagaacaagaagagaaggaagtaattgcacagcag 44700



to top

>emb|AL512414.2|CNS07EFC Human chromosome 14 DNA sequence BAC R-663F5 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158357

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 169   tgcttcctctggccttgcctg 189
             |||||||||||||||||||||
Sbjct: 71516 tgcttcctctggccttgcctg 71536



to top

>emb|CT009510.7| Mouse DNA sequence from clone RP23-47H16 on chromosome 14, complete
             sequence
          Length = 209623

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    aatcgcagaaggaagagaaa 113
             ||||||||||||||||||||
Sbjct: 80776 aatcgcagaaggaagagaaa 80757



to top

>gb|AC013285.10| Homo sapiens chromosome 10 clone RP11-143D9, complete sequence
          Length = 202500

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    aagataacgaagagaaggaa 137
              ||||||||||||||||||||
Sbjct: 182657 aagataacgaagagaaggaa 182676



to top

>gb|AY142078.1| Borrelia burgdorferi strain Sh-2-82 plasmid cp18-1 Erp43 protein
           (erp43) gene, complete cds
          Length = 1199

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 105 gaagagaaagctaaagataa 124
           ||||||||||||||||||||
Sbjct: 555 gaagagaaagctaaagataa 574



to top

>emb|CR855994.1| Wallaby DNA sequence from clone MEKBa-69G12, complete sequence
          Length = 174698

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 363    agatgatgtgaaatatctca 382
              ||||||||||||||||||||
Sbjct: 163454 agatgatgtgaaatatctca 163435



to top

>emb|BX572091.1| Prochlorococcus marinus MED4 complete genome; segment 2/5
          Length = 349082

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 225   atgggcggaatgggcatgccgccaatgggcgggatgggtatgcc 268
             ||||| |||||||| |||||   ||||||||| |||||||||||
Sbjct: 80944 atgggtggaatgggtatgccaggaatgggcggcatgggtatgcc 80901



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 225   atgggcggaatgggcatgccgccaatgggcgggatgggtatgcc 268
             |||||||| ||||| |||||   ||||||||| |||||||||||
Sbjct: 80920 atgggcggcatgggtatgccaggaatgggcggcatgggtatgcc 80877



to top

>emb|BX649546.11| Zebrafish DNA sequence from clone DKEY-27C18 in linkage group 3,
             complete sequence
          Length = 124731

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 405   atgagaatgtatcccagaga 424
             ||||||||||||||||||||
Sbjct: 11901 atgagaatgtatcccagaga 11920



to top

>gb|AC024603.7| Homo sapiens chromosome 10 clone RP11-325D15, complete sequence
          Length = 129243

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   aagataacgaagagaaggaa 137
             ||||||||||||||||||||
Sbjct: 40732 aagataacgaagagaaggaa 40713



to top

>ref|XM_318677.2| Anopheles gambiae str. PEST ENSANGP00000004639 (ENSANGG00000003636),
            partial mRNA
          Length = 3264

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 204  atgggcggtccgccacctcc 223
            ||||||||||||||||||||
Sbjct: 1675 atgggcggtccgccacctcc 1694



to top

>emb|AL391158.5|CNS06C83 Human chromosome 14 DNA sequence BAC R-560O13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 202792

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 91    tagaatcgcagaaggaagagaaag 114
             |||||| |||||||||||||||||
Sbjct: 76053 tagaatagcagaaggaagagaaag 76030



to top

>gb|AF077603.1|AF077603 Borrelia burgdorferi strain 297 plasmid-encoded ElpA2 protein (elpA2)
            gene, complete cds; and unknown genes
          Length = 3468

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 105  gaagagaaagctaaagataa 124
            ||||||||||||||||||||
Sbjct: 1609 gaagagaaagctaaagataa 1628



to top

>emb|AL935160.11| Zebrafish DNA sequence from clone CH211-184C7 in linkage group 12,
             complete sequence
          Length = 140401

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   gatgggcggaatgggcatgc 243
             ||||||||||||||||||||
Sbjct: 32605 gatgggcggaatgggcatgc 32624



to top

>emb|CR456684.10| Zebrafish DNA sequence from clone DKEY-46I8 in linkage group 12, complete
              sequence
          Length = 262809

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 224    gatgggcggaatgggcatgc 243
              ||||||||||||||||||||
Sbjct: 198579 gatgggcggaatgggcatgc 198560



to top

>gb|DQ023454.1| Uranomys ruddi recombination activating protein 1 (Rag1) gene,
            partial cds
          Length = 2983

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  ctctggccttgcctgctccg 194
            ||||||||||||||||||||
Sbjct: 1503 ctctggccttgcctgctccg 1522



to top

>dbj|AP006415.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT37I11, TM0302a,
             complete sequence
          Length = 96704

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 74/92 (80%)
 Strand = Plus / Minus

                                                                         
Query: 46    tccgtgagtacacaagcaaggtagatgatttggtgaaggacaggatagaatcgcagaagg 105
             |||| ||||||||  |||| || |||||  ||||||||||||  || ||| | ||||| |
Sbjct: 33969 tccgcgagtacactggcaaagttgatgaactggtgaaggacaaaattgaagcacagaaag 33910

                                             
Query: 106   aagagaaagctaaagataacgaagagaaggaa 137
             ||| ||| ||||||||  | ||||||||||||
Sbjct: 33909 aagtgaaggctaaagaacaagaagagaaggaa 33878


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,498,878
Number of Sequences: 3902068
Number of extensions: 3498878
Number of successful extensions: 65759
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65557
Number of HSP's gapped (non-prelim): 193
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top