ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27k18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_480438.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
2ref|NM_176831.4| Mus musculus phosphopantothenoylcysteine decarb... 42 1.4
3gb|BC052928.1| Mus musculus phosphopantothenoylcysteine decarbox... 42 1.4
4gb|BC089351.1| Mus musculus phosphopantothenoylcysteine decarbox... 42 1.4
5gb|BC004779.1| Mus musculus phosphopantothenoylcysteine decarbox... 42 1.4
6dbj|AK036042.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 42 1.4
7dbj|AK038628.1| Mus musculus adult male hypothalamus cDNA, RIKEN... 42 1.4
8dbj|AK078825.1| Mus musculus 16 days embryo lung cDNA, RIKEN ful... 42 1.4
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
10dbj|AP005531.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
11dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
12emb|AL974309.17| Zebrafish DNA sequence from clone DKEY-29D5 in ... 40 5.7
13ref|XM_701060.1| PREDICTED: Danio rerio hypothetical protein LOC... 40 5.7
14gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.7

>ref|XM_480438.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 867

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 312 cggcgccggcgggcgggaggg 332
           |||||||||||||||||||||
Sbjct: 469 cggcgccggcgggcgggaggg 449



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>ref|NM_176831.4| Mus musculus phosphopantothenoylcysteine decarboxylase (Ppcdc),
           mRNA
          Length = 2767

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 392 tccagcccaggaacgtccaac 412
           |||||||||||||||||||||
Sbjct: 299 tccagcccaggaacgtccaac 279



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>gb|BC052928.1| Mus musculus phosphopantothenoylcysteine decarboxylase, mRNA (cDNA
           clone MGC:62920 IMAGE:5255304), complete cds
          Length = 1423

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 392 tccagcccaggaacgtccaac 412
           |||||||||||||||||||||
Sbjct: 248 tccagcccaggaacgtccaac 228



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>gb|BC089351.1| Mus musculus phosphopantothenoylcysteine decarboxylase, mRNA (cDNA
           clone MGC:102190 IMAGE:30603115), complete cds
          Length = 2730

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 392 tccagcccaggaacgtccaac 412
           |||||||||||||||||||||
Sbjct: 263 tccagcccaggaacgtccaac 243



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>gb|BC004779.1| Mus musculus phosphopantothenoylcysteine decarboxylase, mRNA (cDNA
           clone IMAGE:3257493), complete cds
          Length = 1678

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 392 tccagcccaggaacgtccaac 412
           |||||||||||||||||||||
Sbjct: 292 tccagcccaggaacgtccaac 272



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>dbj|AK036042.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:9630029K22 product:CDNA FLJ14585
           FIS, CLONE NT2RM4001611, WEAKLY SIMILAR TO SIS2 PROTEIN
           homolog [Homo sapiens], full insert sequence
          Length = 1928

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 392 tccagcccaggaacgtccaac 412
           |||||||||||||||||||||
Sbjct: 282 tccagcccaggaacgtccaac 262



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>dbj|AK038628.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length
           enriched library, clone:A230051J07 product:hypothetical
           Flavoprotein containing protein, full insert sequence
          Length = 725

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 392 tccagcccaggaacgtccaac 412
           |||||||||||||||||||||
Sbjct: 277 tccagcccaggaacgtccaac 257



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>dbj|AK078825.1| Mus musculus 16 days embryo lung cDNA, RIKEN full-length enriched
           library, clone:8430432M10 product:weakly similar to CDNA
           FLJ14585 FIS, CLONE NT2RM4001611, WEAKLY SIMILAR TO SIS2
           PROTEIN [Homo sapiens], full insert sequence
          Length = 1654

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 392 tccagcccaggaacgtccaac 412
           |||||||||||||||||||||
Sbjct: 282 tccagcccaggaacgtccaac 262



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 312     cggcgccggcgggcgggaggg 332
               |||||||||||||||||||||
Sbjct: 5139792 cggcgccggcgggcgggaggg 5139772



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>dbj|AP005531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:B1099H05
          Length = 186036

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 312  cggcgccggcgggcgggaggg 332
            |||||||||||||||||||||
Sbjct: 8148 cggcgccggcgggcgggaggg 8128



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>dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0020B10
          Length = 136175

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 312   cggcgccggcgggcgggaggg 332
             |||||||||||||||||||||
Sbjct: 89556 cggcgccggcgggcgggaggg 89536



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>emb|AL974309.17| Zebrafish DNA sequence from clone DKEY-29D5 in linkage group 1, complete
              sequence
          Length = 214332

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 41     acggagatggaggaacaaacaaag 64
              |||||||| |||||||||||||||
Sbjct: 147101 acggagatagaggaacaaacaaag 147124



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>ref|XM_701060.1| PREDICTED: Danio rerio hypothetical protein LOC562737 (LOC562737),
           mRNA
          Length = 811

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 41  acggagatggaggaacaaacaaag 64
           |||||||| |||||||||||||||
Sbjct: 563 acggagatagaggaacaaacaaag 586



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 312     cggcgccggcgggcgggagg 331
               ||||||||||||||||||||
Sbjct: 3044648 cggcgccggcgggcgggagg 3044629


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,839,353
Number of Sequences: 3902068
Number of extensions: 1839353
Number of successful extensions: 43312
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43166
Number of HSP's gapped (non-prelim): 146
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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