ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27k17 |
|---|---|
| Clone Library Name | barley_pub |
>ETFB_MOUSE (Q9DCW4) Electron transfer flavoprotein beta-subunit (Beta-ETF)| Length = 254 Score = 190 bits (483), Expect = 2e-48 Identities = 99/175 (56%), Positives = 123/175 (70%) Frame = +2 Query: 2 ADRAVHVXXXXXXXXXXXXXXVAKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALL 181 ADR +HV VA++L LA +E LL LGKQAIDDDCNQTGQM A LL Sbjct: 82 ADRGIHVEIPGAQAESLGPLQVARVLAKLAEKEKVDLLFLGKQAIDDDCNQTGQMTAGLL 141 Query: 182 NWPQGTFASKVIIDKDKQKATVEREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMK 361 +WPQGTFAS+V ++ DK K VERE+DGG ET+ L LPAV+T DLRLN+PRYATLPNIMK Sbjct: 142 DWPQGTFASQVTLEGDKVK--VEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMK 199 Query: 362 AKSKVIKKVTPADLNVDVRSDMEVLRVDEPPKRKAGVILSSVDELLDKLKNEARV 526 AK K I+ V DL VD+ S + V+ V+EPP+R AGV + + ++L+ KLK R+ Sbjct: 200 AKKKKIEVVKAGDLGVDLTSKVSVISVEEPPQRSAGVKVETTEDLVAKLKEVGRI 254
>ETFB_RAT (Q68FU3) Electron transfer flavoprotein beta-subunit (Beta-ETF)| Length = 254 Score = 189 bits (481), Expect = 3e-48 Identities = 99/175 (56%), Positives = 123/175 (70%) Frame = +2 Query: 2 ADRAVHVXXXXXXXXXXXXXXVAKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALL 181 ADR +HV VA++L LA +E LL LGKQAIDDDCNQTGQM A LL Sbjct: 82 ADRGIHVEVPGAEAENLGPLQVARVLAKLAEKEKVDLLFLGKQAIDDDCNQTGQMTAGLL 141 Query: 182 NWPQGTFASKVIIDKDKQKATVEREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMK 361 +WPQGTFAS+V ++ DK K VERE+DGG ETI L LPAV+T DLRLN+PRYATLPNIMK Sbjct: 142 DWPQGTFASQVTLEGDKVK--VEREIDGGLETIRLKLPAVVTADLRLNEPRYATLPNIMK 199 Query: 362 AKSKVIKKVTPADLNVDVRSDMEVLRVDEPPKRKAGVILSSVDELLDKLKNEARV 526 AK K I+ + DL VD+ S + V+ V+EPP+R AGV + + ++L+ KLK R+ Sbjct: 200 AKKKKIEVIKAGDLGVDLTSKVSVISVEEPPQRLAGVKVETTEDLVAKLKEVGRI 254
>ETFB_PONPY (Q5RFK0) Electron transfer flavoprotein beta-subunit (Beta-ETF)| Length = 254 Score = 189 bits (479), Expect = 5e-48 Identities = 96/175 (54%), Positives = 124/175 (70%) Frame = +2 Query: 2 ADRAVHVXXXXXXXXXXXXXXVAKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALL 181 ADR +HV VA++L LA +E L++LGKQAIDDDCNQTGQM A L Sbjct: 82 ADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFL 141 Query: 182 NWPQGTFASKVIIDKDKQKATVEREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMK 361 +WPQGTFAS+V ++ DK K VERE+DGG ET+ L LPAV+T DLRLN+PRYATLPNIMK Sbjct: 142 DWPQGTFASQVTLEGDKLK--VEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMK 199 Query: 362 AKSKVIKKVTPADLNVDVRSDMEVLRVDEPPKRKAGVILSSVDELLDKLKNEARV 526 AK K I+ + P DL VD+ S + V+ V++PP+R AGV + + ++L+ KLK R+ Sbjct: 200 AKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI 254
>ETFB_HUMAN (P38117) Electron transfer flavoprotein beta-subunit (Beta-ETF)| Length = 254 Score = 189 bits (479), Expect = 5e-48 Identities = 96/175 (54%), Positives = 124/175 (70%) Frame = +2 Query: 2 ADRAVHVXXXXXXXXXXXXXXVAKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALL 181 ADR +HV VA++L LA +E L++LGKQAIDDDCNQTGQM A L Sbjct: 82 ADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFL 141 Query: 182 NWPQGTFASKVIIDKDKQKATVEREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMK 361 +WPQGTFAS+V ++ DK K VERE+DGG ET+ L LPAV+T DLRLN+PRYATLPNIMK Sbjct: 142 DWPQGTFASQVTLEGDKLK--VEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMK 199 Query: 362 AKSKVIKKVTPADLNVDVRSDMEVLRVDEPPKRKAGVILSSVDELLDKLKNEARV 526 AK K I+ + P DL VD+ S + V+ V++PP+R AGV + + ++L+ KLK R+ Sbjct: 200 AKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI 254
>ETFB_BOVIN (Q2TBV3) Electron transfer flavoprotein beta-subunit (Beta-ETF)| Length = 254 Score = 186 bits (472), Expect = 3e-47 Identities = 95/175 (54%), Positives = 123/175 (70%) Frame = +2 Query: 2 ADRAVHVXXXXXXXXXXXXXXVAKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALL 181 ADR +HV VA++L LA +E L++LGKQAIDDDCNQTGQM A L Sbjct: 82 ADRGIHVEVPAAEANHLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFL 141 Query: 182 NWPQGTFASKVIIDKDKQKATVEREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMK 361 +WPQGTFAS+V ++ DK K VERE+DGG ET+ L LPAV+T DLRLN+PRYATLPNIMK Sbjct: 142 DWPQGTFASQVTLEGDKIK--VEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMK 199 Query: 362 AKSKVIKKVTPADLNVDVRSDMEVLRVDEPPKRKAGVILSSVDELLDKLKNEARV 526 AK K I+ + DL VD+ S + V+ V++PP+R AGV + + ++L+ KLK R+ Sbjct: 200 AKKKKIEVIKAGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI 254
>ETFB_PIG (Q6UAQ8) Electron transfer flavoprotein beta subunit| Length = 254 Score = 185 bits (469), Expect = 8e-47 Identities = 94/175 (53%), Positives = 123/175 (70%) Frame = +2 Query: 2 ADRAVHVXXXXXXXXXXXXXXVAKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALL 181 ADR +HV VA++L LA +E L++LGKQAIDDDCNQTGQM A L Sbjct: 82 ADRGIHVEVPAAEAHHLGPLQVARVLAKLAQKEKVDLVLLGKQAIDDDCNQTGQMTAGFL 141 Query: 182 NWPQGTFASKVIIDKDKQKATVEREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMK 361 +WPQGTFAS+V ++ DK K VERE+DGG ET+ L LPAV+T DLRLN+PRYATLPNIMK Sbjct: 142 DWPQGTFASQVTLEGDKVK--VEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMK 199 Query: 362 AKSKVIKKVTPADLNVDVRSDMEVLRVDEPPKRKAGVILSSVDELLDKLKNEARV 526 AK K I+ + DL VD+ S + V+ V++PP+R AGV + + ++L+ KL+ R+ Sbjct: 200 AKKKKIEVIKAGDLGVDLTSKLSVVSVEDPPQRVAGVKVETTEDLVAKLREIGRI 254
>ETFB_BRAJA (P53575) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 249 Score = 181 bits (458), Expect = 1e-45 Identities = 97/154 (62%), Positives = 116/154 (75%) Frame = +2 Query: 65 VAKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVIIDKDKQKAT 244 VAKIL+ +A +E PGL+ILGKQAIDDD NQTGQMLAALL W Q TFASK+ ++ K T Sbjct: 97 VAKILKKVAEEEQPGLIILGKQAIDDDSNQTGQMLAALLGWSQATFASKLEVEGSDFKVT 156 Query: 245 VEREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPADLNVDVRSD 424 REVDGG +T+ L PA++TTDLRLN+PRYA+LPNIMKAK K I + T AD VDV + Sbjct: 157 --REVDGGLQTVKLKGPAIVTTDLRLNEPRYASLPNIMKAKKKPIAEKTVADYGVDVTAR 214 Query: 425 MEVLRVDEPPKRKAGVILSSVDELLDKLKNEARV 526 +EVL+ EP RKAGV + V EL+ KLKNEA V Sbjct: 215 LEVLKTTEPAGRKAGVKVKDVAELVSKLKNEAGV 248
>ETFB_PARDE (P38975) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 252 Score = 173 bits (438), Expect = 3e-43 Identities = 97/170 (57%), Positives = 115/170 (67%) Frame = +2 Query: 2 ADRAVHVXXXXXXXXXXXXXXVAKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALL 181 ADRA+ V VAKIL A+A E L+I GKQAID+D N TGQMLAA+L Sbjct: 80 ADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAIL 139 Query: 182 NWPQGTFASKVIIDKDKQKATVEREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMK 361 W Q TFASKV I+ K K T REVDGG +TI + LPAV+T DLRLN+PRYA+LPNIMK Sbjct: 140 GWAQATFASKVEIEGAKAKVT--REVDGGLQTIAVSLPAVVTADLRLNEPRYASLPNIMK 197 Query: 362 AKSKVIKKVTPADLNVDVRSDMEVLRVDEPPKRKAGVILSSVDELLDKLK 511 AK K + + T AD VDV +EV+ V EP RKAG+ + SVDEL+ KLK Sbjct: 198 AKKKPLDEKTAADYGVDVAPRLEVVSVREPEGRKAGIKVGSVDELVGKLK 247
>ETFB_SCHPO (Q9UTH2) Probable electron transfer flavoprotein beta-subunit| (Beta-ETF) Length = 254 Score = 147 bits (370), Expect = 2e-35 Identities = 75/149 (50%), Positives = 104/149 (69%) Frame = +2 Query: 65 VAKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVIIDKDKQKAT 244 VAK+L+A +E L++LGKQAIDDD +QTG MLAA+L WPQ T ASKV I+ DK Sbjct: 103 VAKLLKATVEKEKSNLVLLGKQAIDDDAHQTGGMLAAMLGWPQFTSASKVRIEGDK--VI 160 Query: 245 VEREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPADLNVDVRSD 424 V RE+DGG ET+ LPA+ITTDLRLN PR+A L +MKA+ + K++P DL V + Sbjct: 161 VTREIDGGEETLSSTLPAIITTDLRLNVPRFANLAKVMKARKAPLGKMSPEDLGVTIDQR 220 Query: 425 MEVLRVDEPPKRKAGVILSSVDELLDKLK 511 ++ + V EP +++ +++ SVDE++ LK Sbjct: 221 LQTVSVSEPVQKRQNIMVKSVDEMVKTLK 249
>ETFB_YEAST (P42940) Probable electron transfer flavoprotein beta-subunit| (Beta-ETF) Length = 261 Score = 146 bits (368), Expect = 4e-35 Identities = 77/151 (50%), Positives = 104/151 (68%), Gaps = 2/151 (1%) Frame = +2 Query: 65 VAKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVIIDKDKQKAT 244 +AKIL+A+ ++ L+++GKQAIDDDCN TGQMLA LLNWPQ T A+KV D + Sbjct: 107 IAKILKAVVEKKGSNLVLMGKQAIDDDCNNTGQMLAGLLNWPQATNAAKVEF-LDNGRVQ 165 Query: 245 VEREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPAD--LNVDVR 418 V RE+D G E I LP VITTDLRLN PRY LP +MKAK K I+K+ A +++ Sbjct: 166 VTREIDDGEEVIEASLPMVITTDLRLNTPRYVGLPKLMKAKKKPIEKLDIAKDFPEINIE 225 Query: 419 SDMEVLRVDEPPKRKAGVILSSVDELLDKLK 511 ++++ ++EP + GV L+SVDEL++KLK Sbjct: 226 PQLKIVSMEEPKTKSPGVKLNSVDELIEKLK 256
>ETFB_METME (P53570) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 264 Score = 80.9 bits (198), Expect = 2e-15 Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 7/176 (3%) Frame = +2 Query: 2 ADRAVHVXXXXXXXXXXXXXXVAKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALL 181 ADRAV V V +IL + +E+P ++ G Q+ D TG +A+ L Sbjct: 81 ADRAVRVWDDAAEGSDAIV--VGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYL 138 Query: 182 NWPQGTFASKVIIDKDKQKATVEREVDGG-TETICLDLPAVITTDLRLNQPRYATLPNIM 358 NWP + + KA + RE++GG + + ++ PAV+T L +N+PRYA+L I Sbjct: 139 NWPHAAVVADLQYKPGDNKAVIRRELEGGMLQEVEINCPAVLTIQLGINKPRYASLRGIK 198 Query: 359 KAKSKVIKKVTPADLNVD------VRSDMEVLRVDEPPKRKAGVILSSVDELLDKL 508 +A +K I++V+ AD+ + +S V R+ P K +A +I ++ E K+ Sbjct: 199 QAATKPIEEVSLADIGLSANDVGAAQSMSRVRRMYIPEKGRATMIEGTISEQAAKI 254
>ETFB_BACSU (P94550) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 257 Score = 79.3 bits (194), Expect = 6e-15 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 8/162 (4%) Frame = +2 Query: 65 VAKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVIIDKDKQKAT 244 ++++L + L++ G AID Q LA LL+ P T +K+ I+ +A Sbjct: 97 ISQVLYHYMKDQEFDLILGGNVAIDGGSGQVAPRLAELLDIPCITTITKLEINGTDAEA- 155 Query: 245 VEREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPADLNVDVRSD 424 ER+V+G E I LP ++T LN+PRY +LP IMKAK K ++++ DL++D Sbjct: 156 -ERDVEGDVEKIKTTLPLLVTAQQGLNEPRYPSLPGIMKAKKKPLEELELDDLDLDEEDA 214 Query: 425 MEVLRVDE---PPKRKAGVIL-----SSVDELLDKLKNEARV 526 L+ E PPK++AG +L EL+ L++EA+V Sbjct: 215 EPKLKTIERFLPPKKEAGKLLQGEPAEQAKELVSLLRSEAKV 256
>ETFB_MEGEL (O85691) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 270 Score = 70.9 bits (172), Expect = 2e-12 Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 17/165 (10%) Frame = +2 Query: 65 VAKILRALALQ---ESPGLLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVIIDKDKQ 235 +A+ ++ LA E +++ GKQAID D Q G +A L PQ T+A + ++ D Sbjct: 102 LAQAIKKLAADKGIEQFDIILCGKQAIDGDTAQVGPQIACELGIPQITYARDIKVEGD-- 159 Query: 236 KATVEREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPADLNVD- 412 K TV++E + G P +IT LN+PR+ T+ MKAK + I + A + D Sbjct: 160 KVTVQQENEEGYIVTEAQFPVLITAVKDLNEPRFPTIRGTMKAKRREIPNLDAAAVAADD 219 Query: 413 -----VRSDMEVLRVDEPPKRKAGVIL--------SSVDELLDKL 508 S +V ++ PP+R G++L + VD++++KL Sbjct: 220 AQIGLSGSPTKVRKIFTPPQRSGGLVLKVEDDNEQAIVDQVMEKL 264
>ETFB_CLOTS (P97089) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 260 Score = 67.8 bits (164), Expect = 2e-11 Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 12/147 (8%) Frame = +2 Query: 110 LLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVIIDKDKQKATVEREVDGGTETICLD 289 ++ G+QAID D Q G +A L+ PQ T+ KV I+ DK VER ++ G E I + Sbjct: 112 IVFCGRQAIDGDTAQVGPQIAEQLDIPQVTYVRKVEIEGDK--LIVERALEDGYEIIEVK 169 Query: 290 LPAVITTDLRLNQPRYATLPNIMKA-KSKVIKKVTPADLNVDVR------SDMEVLRVDE 448 P ++T LN PRY ++ I A K +K +T DL VD S +V+ Sbjct: 170 TPVLLTAIKELNVPRYPSIKGIFNAYNKKEVKILTADDLEVDKNELGLKGSPTKVVATST 229 Query: 449 PPKRKAGVILS-----SVDELLDKLKN 514 P +AG I + +V L+++L + Sbjct: 230 PNTERAGEIFTGNIKEAVQNLVERLNS 256
>ETFB_MYCTU (P64097) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 266 Score = 65.1 bits (157), Expect = 1e-10 Identities = 46/137 (33%), Positives = 68/137 (49%) Frame = +2 Query: 2 ADRAVHVXXXXXXXXXXXXXXVAKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALL 181 AD+AVH+ A + RAL E L+I G ++ D ++A L Sbjct: 85 ADKAVHLKDDGMHGSDVIQTGWA-LARALGTIEGTELVIAGNESTDGVGGAVPAIIAEYL 143 Query: 182 NWPQGTFASKVIIDKDKQKATVEREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMK 361 PQ T KV I+ K T ERE D G T+ LPAVI+ + ++N+PR+ + IM Sbjct: 144 GLPQLTHLRKVSIEGGK--ITGERETDEGVFTLEATLPAVISVNEKINEPRFPSFKGIMA 201 Query: 362 AKSKVIKKVTPADLNVD 412 AK K + +T A++ V+ Sbjct: 202 AKKKEVTVLTLAEIGVE 218
>ETFB_MYCBO (P64098) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 266 Score = 65.1 bits (157), Expect = 1e-10 Identities = 46/137 (33%), Positives = 68/137 (49%) Frame = +2 Query: 2 ADRAVHVXXXXXXXXXXXXXXVAKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALL 181 AD+AVH+ A + RAL E L+I G ++ D ++A L Sbjct: 85 ADKAVHLKDDGMHGSDVIQTGWA-LARALGTIEGTELVIAGNESTDGVGGAVPAIIAEYL 143 Query: 182 NWPQGTFASKVIIDKDKQKATVEREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMK 361 PQ T KV I+ K T ERE D G T+ LPAVI+ + ++N+PR+ + IM Sbjct: 144 GLPQLTHLRKVSIEGGK--ITGERETDEGVFTLEATLPAVISVNEKINEPRFPSFKGIMA 201 Query: 362 AKSKVIKKVTPADLNVD 412 AK K + +T A++ V+ Sbjct: 202 AKKKEVTVLTLAEIGVE 218
>ETFB_MYCLE (O33095) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 266 Score = 62.0 bits (149), Expect = 1e-09 Identities = 43/138 (31%), Positives = 68/138 (49%) Frame = +2 Query: 2 ADRAVHVXXXXXXXXXXXXXXVAKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALL 181 AD+AVH+ A + RAL E L+I G ++ D ++A L Sbjct: 85 ADKAVHLKDDGMHGSDVIQTGWA-LARALGTIEGTELVIAGNESTDGVGGVVPAIIAEYL 143 Query: 182 NWPQGTFASKVIIDKDKQKATVEREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMK 361 PQ T + ++ K T ERE D G T+ LPAV++ + ++N+PR+ + IM Sbjct: 144 GLPQLTHLRTISVEGGK--ITGERETDEGVFTLEAVLPAVVSVNEKINEPRFPSFKGIMA 201 Query: 362 AKSKVIKKVTPADLNVDV 415 AK K + +T A++ V+V Sbjct: 202 AKKKEVTVLTLAEIGVEV 219
>ETFB_CLOAB (P52040) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 259 Score = 61.6 bits (148), Expect = 1e-09 Identities = 41/137 (29%), Positives = 69/137 (50%) Frame = +2 Query: 110 LLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVIIDKDKQKATVEREVDGGTETICLD 289 ++ G+QAID D Q G +A L PQ T+ KV +D D K + + + G E + + Sbjct: 112 IVFAGRQAIDGDTAQVGPEIAEHLGIPQVTYVEKVEVDGDTLK--IRKAWEDGYEVVEVK 169 Query: 290 LPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPADLNVDVRSDMEVLRVDEPPKRKAG 469 P ++T LN PRY ++ I A K +K T D++VD ++++ + K+ + Sbjct: 170 TPVLLTAIKELNVPRYMSVEKIFGAFDKEVKMWTADDIDVD-KANLGLKGSPTKVKKSST 228 Query: 470 VILSSVDELLDKLKNEA 520 + E++DK EA Sbjct: 229 KEVKGQGEVIDKPVKEA 245
>FIXA_RHILP (Q05559) Protein fixA| Length = 279 Score = 60.8 bits (146), Expect = 2e-09 Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 8/140 (5%) Frame = +2 Query: 65 VAKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVI-IDKDKQKA 241 +AKI A +P ++ KQ ID D Q G +A L+ Q T+ +K++ +D + ++ Sbjct: 103 IAKIGEAFG---TPDIVFTAKQTIDGDTAQVGPGIAKRLDLLQLTYVAKIVSVDINGREI 159 Query: 242 TVEREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPADLNVD--- 412 TVER +GGT+T+ LP +IT N+ R +L + ++A I K AD ++ Sbjct: 160 TVERRSEGGTQTLMSKLPCLITMLEGTNEIRRGSLDDALRAARSQIVKWNAADAGIEDLT 219 Query: 413 ----VRSDMEVLRVDEPPKR 460 S V RV PP+R Sbjct: 220 KCGLRGSPTVVKRVFAPPER 239
>FIXA_ECOL6 (Q8FLA3) Protein fixA| Length = 256 Score = 58.9 bits (141), Expect = 8e-09 Identities = 38/132 (28%), Positives = 65/132 (49%) Frame = +2 Query: 68 AKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVIIDKDKQKATV 247 A +L A A + L++ G + D Q G ++ +LN P SK II TV Sbjct: 101 ASVLAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSK-IISLTADTLTV 159 Query: 248 EREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPADLNVDVRSDM 427 ERE++ TET+ + LPAV+ +N P+ ++ I+ A K ++ + AD+ + + Sbjct: 160 ERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAW 219 Query: 428 EVLRVDEPPKRK 463 +V P +R+ Sbjct: 220 SEQQVAAPKQRE 231
>FIXA_RHISN (Q53210) Protein fixA| Length = 285 Score = 58.2 bits (139), Expect = 1e-08 Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 9/148 (6%) Frame = +2 Query: 101 SPGLLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVI-IDKDKQKATVEREVDGGTET 277 SP ++ GKQ ID D Q G +A L+ Q T+ +KV ID + TVER +GGT Sbjct: 114 SPDIVFTGKQTIDGDTAQVGPGIAKRLDLVQLTYVAKVTSIDLRTRAITVERRAEGGTHV 173 Query: 278 ICLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPADLNVD-------VRSDMEVL 436 + +LP +IT N R +L + ++A I K + ++ S V Sbjct: 174 LKSELPCLITMLEGSNAIRRGSLDDALRAARSEIVKWNAVEAGIEDITKCGLRGSPTVVK 233 Query: 437 RVDEP-PKRKAGVILSSVDELLDKLKNE 517 RV P P+ + V + +V++ + + NE Sbjct: 234 RVFAPTPREQKAVQIDTVEKAMQDVANE 261
>FIXA_SALTY (Q8ZRX0) Protein fixA| Length = 256 Score = 57.4 bits (137), Expect = 2e-08 Identities = 40/132 (30%), Positives = 64/132 (48%) Frame = +2 Query: 68 AKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVIIDKDKQKATV 247 A L A A + LLI G + D Q G ++ LN P SK++ D TV Sbjct: 101 ATALAAAAQKSGFDLLICGDGSSDLYAQQVGLLVGEALNIPAINGVSKILSLTDST-LTV 159 Query: 248 EREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPADLNVDVRSDM 427 ERE++ ET+ + LPAVI +N P+ ++ I+ A K ++ +PAD+ ++ Sbjct: 160 ERELEDEVETLSIPLPAVIAVSTDINTPQIPSMKAILGAAKKPVQVWSPADIGLNSVPAY 219 Query: 428 EVLRVDEPPKRK 463 +V P +R+ Sbjct: 220 SAQQVAAPKQRE 231
>FIXA_SALTI (Q8Z9L0) Protein fixA| Length = 256 Score = 57.4 bits (137), Expect = 2e-08 Identities = 40/132 (30%), Positives = 64/132 (48%) Frame = +2 Query: 68 AKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVIIDKDKQKATV 247 A L A A + LLI G + D Q G ++ LN P SK++ D TV Sbjct: 101 ATALAAAAQKSGFDLLICGDGSSDLYAQQVGLLVGEALNIPAINGVSKILSLTDST-LTV 159 Query: 248 EREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPADLNVDVRSDM 427 ERE++ ET+ + LPAVI +N P+ ++ I+ A K ++ +PAD+ ++ Sbjct: 160 ERELEDEVETLSIPLPAVIAVSTDINTPQIPSMKAILGAAKKPVQVWSPADIGLNSVPAY 219 Query: 428 EVLRVDEPPKRK 463 +V P +R+ Sbjct: 220 STQQVAAPKQRE 231
>FIXA_SALPA (Q5PIN4) Protein fixA| Length = 256 Score = 57.4 bits (137), Expect = 2e-08 Identities = 40/132 (30%), Positives = 64/132 (48%) Frame = +2 Query: 68 AKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVIIDKDKQKATV 247 A L A A + LLI G + D Q G ++ LN P SK++ D TV Sbjct: 101 ATALAAAAQKSGFDLLICGDGSSDLYAQQVGLLVGEALNIPAINGVSKILSLTDST-LTV 159 Query: 248 EREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPADLNVDVRSDM 427 ERE++ ET+ + LPAVI +N P+ ++ I+ A K ++ +PAD+ ++ Sbjct: 160 ERELEDEVETLSIPLPAVIAVSTDINTPQIPSMKAILGAAKKPVQVWSPADIGLNSVPAY 219 Query: 428 EVLRVDEPPKRK 463 +V P +R+ Sbjct: 220 STQQVAAPKQRE 231
>FIXA_ECOLI (P60566) Protein fixA| Length = 256 Score = 57.4 bits (137), Expect = 2e-08 Identities = 38/132 (28%), Positives = 64/132 (48%) Frame = +2 Query: 68 AKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVIIDKDKQKATV 247 A L A A + L++ G + D Q G ++ +LN P SK II TV Sbjct: 101 ASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSK-IISLTADTLTV 159 Query: 248 EREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPADLNVDVRSDM 427 ERE++ TET+ + LPAV+ +N P+ ++ I+ A K ++ + AD+ + + Sbjct: 160 ERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAW 219 Query: 428 EVLRVDEPPKRK 463 +V P +R+ Sbjct: 220 SEQQVAAPKQRE 231
>FIXA_ECO57 (P60567) Protein fixA| Length = 256 Score = 57.4 bits (137), Expect = 2e-08 Identities = 38/132 (28%), Positives = 64/132 (48%) Frame = +2 Query: 68 AKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVIIDKDKQKATV 247 A L A A + L++ G + D Q G ++ +LN P SK II TV Sbjct: 101 ASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSK-IISLTADTLTV 159 Query: 248 EREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPADLNVDVRSDM 427 ERE++ TET+ + LPAV+ +N P+ ++ I+ A K ++ + AD+ + + Sbjct: 160 ERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAW 219 Query: 428 EVLRVDEPPKRK 463 +V P +R+ Sbjct: 220 SEQQVAAPKQRE 231
>FIXA_SHIFL (P59673) Protein fixA| Length = 256 Score = 55.8 bits (133), Expect = 7e-08 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 3/125 (2%) Frame = +2 Query: 68 AKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVIIDKDKQKATV 247 A L A A + L++ G + D Q G ++ +LN P SK II TV Sbjct: 101 ASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSK-IISLTADTLTV 159 Query: 248 EREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPADLN---VDVR 418 ERE++ TET+ + LPAV+ +N P+ ++ I+ A K ++ + AD+ VD Sbjct: 160 ERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAVDAW 219 Query: 419 SDMEV 433 S+ +V Sbjct: 220 SEQQV 224
>FIXA_AZOVI (P53576) Protein fixA| Length = 281 Score = 53.5 bits (127), Expect = 3e-07 Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 1/107 (0%) Frame = +2 Query: 65 VAKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVI-IDKDKQKA 241 ++ ++R + L+ GKQ ID D Q G +A L++ T+ S+++ +D K++ Sbjct: 101 LSAVIRKIMEDMPVDLIFTGKQTIDGDTAQVGPGIAKRLDYQLLTYVSRIVDVDTAKKEI 160 Query: 242 TVEREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIK 382 VER +GG + + LP +IT N+ R+ L ++ +A +K Sbjct: 161 QVERRAEGGVQLLETSLPCLITMLEGTNEMRFGDLDDLFRAARHELK 207
>FIXA_RHIME (P09818) Protein fixA| Length = 292 Score = 52.4 bits (124), Expect = 8e-07 Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 1/104 (0%) Frame = +2 Query: 101 SPGLLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVI-IDKDKQKATVEREVDGGTET 277 +P ++ GKQ ID D Q G +A L+ Q T+ +K++ ID ++ TVER +GG++ Sbjct: 114 TPDVVFTGKQTIDGDTAQVGPGIAKRLDLQQLTYVAKILSIDAASREITVERRAEGGSQI 173 Query: 278 ICLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPADLNV 409 + LP ++T + R L + ++A + K + AD + Sbjct: 174 LRTGLPCLVTMLDGADAIRRGRLDDALRAARTKVVKWSAADAGI 217
>FIXA_AZOCA (P26482) Protein fixA| Length = 281 Score = 45.1 bits (105), Expect = 1e-04 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Frame = +2 Query: 101 SPGLLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVI-IDKDKQKATVEREVDGGTET 277 +P ++ GKQ ID D Q G +A L Q T+ +K+ +D + VER +GG + Sbjct: 114 APDIVFTGKQTIDGDTAQVGPGIAKRLGLLQLTYVAKIANVDLAGRSIQVERRSEGGVQV 173 Query: 278 ICLDLPAVITTDLRLNQPRYATLPNIMKA 364 + LP +IT N+ R + + ++A Sbjct: 174 LQTRLPCLITMLEATNEIRRGAMADALRA 202
>YDIQ_ECOLI (P76201) Putative electron transfer flavoprotein subunit ydiQ| Length = 254 Score = 41.6 bits (96), Expect = 0.001 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 7/155 (4%) Frame = +2 Query: 68 AKILRALALQESPGLLILGKQAIDDDCNQTGQMLAALLNWPQGTFASKVIIDKDKQKATV 247 AK L A + LLI G+ + D Q G ++ +L P S I + + Sbjct: 98 AKALAAAIEKIGFDLLIFGEGSGDLYAQQVGLLVGEILQLPVINAVSA--IQRQGNTLVI 155 Query: 248 EREVDGGTETICLDLPAVITTDLRLNQPRYATLPNIMKAKSKVIKKVTPADLNVDVRSDM 427 ER ++ E I L +PAV+ +N PR ++ I+ A K + + +D++ + + Sbjct: 156 ERTLEDDVEVIELSVPAVLCVTSDINVPRIPSMKAILGAGKKPVNQWQASDIDWSQSAPL 215 Query: 428 -EVLRVDEPPKRKAGVIL------SSVDELLDKLK 511 E++ + PP+ + I+ ++ EL + LK Sbjct: 216 AELVGIRVPPQTERKHIIIDNDSPEAIAELAEHLK 250
>TBB_YEAST (P02557) Tubulin beta chain (Beta tubulin)| Length = 457 Score = 35.0 bits (79), Expect = 0.13 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Frame = +2 Query: 206 SKVIIDKDKQKATVEREVDGGTETICLDLPA---VITTDLRLNQPRYATLPNIMKAKSKV 376 S +++ +V + V+ ET C+D A + L+LNQP Y L N++ S V Sbjct: 176 SDTVVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLV---SSV 232 Query: 377 IKKVT-----PADLNVDVR 418 + VT P LN D+R Sbjct: 233 MSGVTTSLRYPGQLNSDLR 251
>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) (P145) Length = 1229 Score = 31.2 bits (69), Expect = 1.8 Identities = 20/49 (40%), Positives = 24/49 (48%) Frame = -1 Query: 525 TRAXXXXXXXXXSTDERITPAFLFGGSSTRSTSMSDLTSTFRSAGVTFL 379 T A STD PAF FG +S S+S+S TST +A FL Sbjct: 792 TSAVAPITSASPSTDSASKPAFGFGINSVSSSSVSTTTSTATAASQPFL 840
>CTPI_MYCTU (Q10900) Probable cation-transporting ATPase I (EC 3.6.3.-)| Length = 1625 Score = 30.8 bits (68), Expect = 2.4 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 8/56 (14%) Frame = +2 Query: 290 LPAVITTDLRLNQPRYATLPNIMKAKSKVI--------KKVTPADLNVDVRSDMEV 433 +PAV TT RL R+AT + AKS + +V PAD + V D+EV Sbjct: 836 VPAVATTRRRLEAARHATRTATVSAKSLRVGDVIDLAAPEVVPADARLLVAEDLEV 891
>Y209_ENCCU (Q8SWH3) Hypothetical protein ECU02_0090| Length = 258 Score = 30.0 bits (66), Expect = 4.1 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Frame = -1 Query: 474 ITPAFLFGGSSTRSTSMSDLTSTFRSAGVTFLI---------TFDFAFIMFGSVAYRGWF 322 I P+F + STS +T++F + G+ L+ TF + YR +F Sbjct: 126 ILPSFFIPPTYLLSTSCDFITTSFTATGINILVDLMILLSYLTFLLLLLFLEKAEYRPYF 185 Query: 321 SLRSVVITAGKS 286 L S V+ KS Sbjct: 186 ILASFVLILVKS 197
>RL10_HALSA (Q9HSS4) 50S ribosomal protein L10e| Length = 176 Score = 29.6 bits (65), Expect = 5.3 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 4/38 (10%) Frame = +1 Query: 346 AKHNEGEVEGDQESNPCR----PERRCQVRHGGAPGGR 447 A+H G+++ D + P + P+ CQ+RHG R Sbjct: 32 AQHKMGDLQADADDYPVQISLVPQEECQLRHGSLEAAR 69
>CTPI_MYCLE (O53114) Probable cation-transporting ATPase I (EC 3.6.3.-)| Length = 1609 Score = 29.6 bits (65), Expect = 5.3 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 8/56 (14%) Frame = +2 Query: 290 LPAVITTDLRLNQPRYATLPNIMKAKS--------KVIKKVTPADLNVDVRSDMEV 433 +PAV TT RL ++AT + AKS +V PAD V V D+EV Sbjct: 836 VPAVATTRRRLEAAQHATRTVTVSAKSLRAGDVIDLAAPEVVPADARVLVAEDLEV 891
>TOP2_CANGA (O93794) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1406 Score = 29.3 bits (64), Expect = 7.0 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = +2 Query: 377 IKKVTPADLNVDVRSDMEVLRVDEPPKRKAGVILSSVDELLD 502 + ++T D +V S + PPKRKA V+ SS DEL D Sbjct: 1308 LDQITSEDTSVK-ESSAPAAKKKAPPKRKAKVVESSEDELSD 1348
>MUTS_LEGPL (Q5WVP6) DNA mismatch repair protein mutS| Length = 846 Score = 28.9 bits (63), Expect = 9.1 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = +2 Query: 368 SKVIKKVTPADLNVDVRSDMEVLRVDEPPK--RKAGVILSSVDELLDKLKN 514 +++ K+++P L ++ +E +D PP R GVI DE LD+L+N Sbjct: 387 NEIKKEISPLPL---LQQLLETAIIDNPPMLIRDGGVIAPGFDEELDELRN 434
>MUTS_LEGPH (Q5ZUJ3) DNA mismatch repair protein mutS| Length = 846 Score = 28.9 bits (63), Expect = 9.1 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = +2 Query: 368 SKVIKKVTPADLNVDVRSDMEVLRVDEPPK--RKAGVILSSVDELLDKLKN 514 +++ K+++P L ++ +E +D PP R GVI DE LD+L+N Sbjct: 387 NEIKKEISPLPL---LQQLLETAIIDNPPMLIRDGGVIAPGFDEELDELRN 434
>MUTS_LEGPA (Q5X4B2) DNA mismatch repair protein mutS| Length = 846 Score = 28.9 bits (63), Expect = 9.1 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = +2 Query: 368 SKVIKKVTPADLNVDVRSDMEVLRVDEPPK--RKAGVILSSVDELLDKLKN 514 +++ K+++P L ++ +E +D PP R GVI DE LD+L+N Sbjct: 387 NEIKKEISPLPL---LQQLLETAIIDNPPMLIRDGGVIAPGFDEELDELRN 434 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,616,263 Number of Sequences: 219361 Number of extensions: 1158404 Number of successful extensions: 3791 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 3703 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3769 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
