ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27j22 |
|---|---|
| Clone Library Name | barley_pub |
>RPOC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1479 Score = 95.5 bits (236), Expect = 4e-20 Identities = 48/49 (97%), Positives = 48/49 (97%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEKEKAGASLVXVRANDLIRDFLRIELVKSTIS 149 TNSQFVRTCLVVNWEQEEKEKAGASLV VRANDLIRDFLRIELVKSTIS Sbjct: 940 TNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVKSTIS 988
>RPOC2_SACOF (Q6ENX1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 88.2 bits (217), Expect = 6e-18 Identities = 45/49 (91%), Positives = 45/49 (91%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEKEKAGASLVXVRANDLIRDFLRIELVKSTIS 149 TNSQFVRTCLVVNWEQEEKE A ASLV VR NDLIRDFLRIELVKSTIS Sbjct: 984 TNSQFVRTCLVVNWEQEEKEGARASLVEVRTNDLIRDFLRIELVKSTIS 1032
>RPOC2_SACHY (Q6L3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 88.2 bits (217), Expect = 6e-18 Identities = 45/49 (91%), Positives = 45/49 (91%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEKEKAGASLVXVRANDLIRDFLRIELVKSTIS 149 TNSQFVRTCLVVNWEQEEKE A ASLV VR NDLIRDFLRIELVKSTIS Sbjct: 984 TNSQFVRTCLVVNWEQEEKEGARASLVEVRTNDLIRDFLRIELVKSTIS 1032
>RPOC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1527 Score = 85.5 bits (210), Expect = 4e-17 Identities = 43/48 (89%), Positives = 44/48 (91%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEKEKAGASLVXVRANDLIRDFLRIELVKSTI 146 TNSQFVRTCLVVNWEQEEKE A ASLV V+ NDLIRDFLRIELVKSTI Sbjct: 977 TNSQFVRTCLVVNWEQEEKEGARASLVEVKTNDLIRDFLRIELVKSTI 1024
>RPOC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 83.6 bits (205), Expect = 1e-16 Identities = 41/49 (83%), Positives = 45/49 (91%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEKEKAGASLVXVRANDLIRDFLRIELVKSTIS 149 TNSQFVRTCLV+NWEQEEKE+A ASLV +RAN LIRDFLRI L+KSTIS Sbjct: 958 TNSQFVRTCLVLNWEQEEKEEARASLVEIRANGLIRDFLRIGLIKSTIS 1006
>RPOC2_ORYNI (Q6ENI2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 83.6 bits (205), Expect = 1e-16 Identities = 41/49 (83%), Positives = 45/49 (91%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEKEKAGASLVXVRANDLIRDFLRIELVKSTIS 149 TNSQFVRTCLV+NWEQEEKE+A ASLV +RAN LIRDFLRI L+KSTIS Sbjct: 958 TNSQFVRTCLVLNWEQEEKEEARASLVEIRANGLIRDFLRIGLIKSTIS 1006
>RPOC2_ACOCL (Q3V544) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 63.2 bits (152), Expect = 2e-10 Identities = 33/51 (64%), Positives = 38/51 (74%), Gaps = 3/51 (5%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK---EKAGASLVXVRANDLIRDFLRIELVKSTI 146 T+ Q VRTCLV+NW+QE+ E AS V VRANDLIRDF+RIEL KS I Sbjct: 830 TSIQLVRTCLVLNWDQEQNGSIEGVRASFVEVRANDLIRDFIRIELCKSAI 880
>RPOC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 62.0 bits (149), Expect = 4e-10 Identities = 32/54 (59%), Positives = 41/54 (75%), Gaps = 5/54 (9%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQE-----EKEKAGASLVXVRANDLIRDFLRIELVKSTIS 149 T+ Q VRTCLV+NW+Q+ E+E+A SL VR NDLIR+F+RI+LVKS IS Sbjct: 824 TSIQLVRTCLVLNWDQDRAGSIEEEEAYTSLAEVRVNDLIRNFIRIDLVKSPIS 877
>RPOC2_NYMAL (Q6EW58) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1401 Score = 60.8 bits (146), Expect = 1e-09 Identities = 32/51 (62%), Positives = 39/51 (76%), Gaps = 3/51 (5%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK---EKAGASLVXVRANDLIRDFLRIELVKSTI 146 T+ Q VRTCLV+NW+Q++K EK AS VRANDLIR F+RI+LVKS I Sbjct: 835 TSIQLVRTCLVLNWDQDKKGSIEKVQASSAEVRANDLIRYFIRIDLVKSPI 885
>RPOC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1388 Score = 59.7 bits (143), Expect = 2e-09 Identities = 32/53 (60%), Positives = 38/53 (71%), Gaps = 4/53 (7%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK----EKAGASLVXVRANDLIRDFLRIELVKSTIS 149 T+ Q VRTCLV+NW Q++K E+A AS V +R N LIR FLRI LVKS IS Sbjct: 826 TSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPIS 878
>RPOC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1377 Score = 59.7 bits (143), Expect = 2e-09 Identities = 31/51 (60%), Positives = 38/51 (74%), Gaps = 3/51 (5%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK---EKAGASLVXVRANDLIRDFLRIELVKSTI 146 T+ Q VRTCLV+NW+Q+ E+ AS V VRAN LIRDFL+I+LVKS I Sbjct: 831 TSLQLVRTCLVLNWDQDRNGSIEEVHASFVEVRANGLIRDFLKIDLVKSPI 881
>RPOC2_ATRBE (Q8S8Y1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1389 Score = 59.7 bits (143), Expect = 2e-09 Identities = 32/53 (60%), Positives = 38/53 (71%), Gaps = 4/53 (7%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK----EKAGASLVXVRANDLIRDFLRIELVKSTIS 149 T+ Q VRTCLV+NW Q++K E+A AS V +R N LIR FLRI LVKS IS Sbjct: 830 TSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPIS 882
>RPOC2_SOLTU (Q2VEI6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 59.7 bits (143), Expect = 2e-09 Identities = 32/53 (60%), Positives = 38/53 (71%), Gaps = 4/53 (7%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK----EKAGASLVXVRANDLIRDFLRIELVKSTIS 149 T+ Q VRTCLV+NW Q++K E+A AS V +R N LIR FLRI LVKS IS Sbjct: 830 TSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPIS 882
>RPOC2_NICTO (Q33C48) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 59.7 bits (143), Expect = 2e-09 Identities = 32/53 (60%), Positives = 38/53 (71%), Gaps = 4/53 (7%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK----EKAGASLVXVRANDLIRDFLRIELVKSTIS 149 T+ Q VRTCLV+NW Q++K E+A AS V +R N LIR FLRI LVKS IS Sbjct: 830 TSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPIS 882
>RPOC2_NICSY (Q3C1G9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 59.7 bits (143), Expect = 2e-09 Identities = 32/53 (60%), Positives = 38/53 (71%), Gaps = 4/53 (7%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK----EKAGASLVXVRANDLIRDFLRIELVKSTIS 149 T+ Q VRTCLV+NW Q++K E+A AS V +R N LIR FLRI LVKS IS Sbjct: 830 TSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPIS 882
>RPOC2_PHAAO (Q3BAQ2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1388 Score = 58.2 bits (139), Expect = 6e-09 Identities = 30/53 (56%), Positives = 38/53 (71%), Gaps = 4/53 (7%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK----EKAGASLVXVRANDLIRDFLRIELVKSTIS 149 T+ Q VR CLV+ W+QE+K EK AS V +R NDL+ F+RIELVKST+S Sbjct: 831 TSIQLVRACLVLTWDQEKKSSIEEKVHASFVEIRTNDLLCYFIRIELVKSTLS 883
>RPOC2_EUCGG (Q49L08) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 57.8 bits (138), Expect = 8e-09 Identities = 30/53 (56%), Positives = 38/53 (71%), Gaps = 4/53 (7%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK----EKAGASLVXVRANDLIRDFLRIELVKSTIS 149 T+ Q VRTCL++NW+Q++K E+A S V V N LIRDFLRI+LVK IS Sbjct: 831 TSIQLVRTCLILNWDQDKKSSSIEEAHTSFVEVSTNGLIRDFLRIDLVKFPIS 883
>RPOC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1332 Score = 57.0 bits (136), Expect = 1e-08 Identities = 32/53 (60%), Positives = 38/53 (71%), Gaps = 4/53 (7%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK----EKAGASLVXVRANDLIRDFLRIELVKSTIS 149 T+ Q VRTCLV+NW ++EK E+A AS V V N LIR FLRI+LVKS IS Sbjct: 802 TSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHIS 854
>RPOC2_LACSA (Q56P11) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1381 Score = 56.6 bits (135), Expect = 2e-08 Identities = 30/50 (60%), Positives = 38/50 (76%), Gaps = 1/50 (2%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK-EKAGASLVXVRANDLIRDFLRIELVKSTIS 149 T+ Q VRT LV+NW+Q++K EKA AS V +R N L+R FLRI+L KS IS Sbjct: 828 TSIQLVRTSLVLNWDQDKKIEKACASFVEIRTNGLLRYFLRIDLAKSPIS 877
>RPOC2_PANGI (Q68S16) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1387 Score = 56.6 bits (135), Expect = 2e-08 Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 4/52 (7%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK----EKAGASLVXVRANDLIRDFLRIELVKSTI 146 T+ Q VRTCLV+NW Q++K E+A S V +R N LIRDFL+I+L KS I Sbjct: 827 TSIQLVRTCLVLNWVQDKKSSSIEEARTSFVEIRINSLIRDFLKIDLAKSPI 878
>RPOC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1361 Score = 55.8 bits (133), Expect = 3e-08 Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 4/53 (7%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK----EKAGASLVXVRANDLIRDFLRIELVKSTIS 149 T+ Q VRTCLV+NW Q++K E+A S V VR N +I+DFL++ LVK IS Sbjct: 820 TSIQLVRTCLVLNWNQDKKGSSIEEARGSFVEVRTNGMIQDFLKVNLVKPAIS 872
>RPOC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 55.1 bits (131), Expect = 5e-08 Identities = 30/52 (57%), Positives = 37/52 (71%), Gaps = 4/52 (7%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK----EKAGASLVXVRANDLIRDFLRIELVKSTI 146 T+ Q VRT ++NW+Q++K E A AS V VRA LIRDFLRI+LVKS I Sbjct: 828 TSIQLVRTWFILNWDQDKKSASAEAAHASFVEVRAKGLIRDFLRIDLVKSPI 879
>RPOC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 54.3 bits (129), Expect = 9e-08 Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 4/53 (7%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK----EKAGASLVXVRANDLIRDFLRIELVKSTIS 149 T+ Q VRTCLV+NW+Q++K E A AS V + L+R FLRI+LVKS IS Sbjct: 828 TSIQLVRTCLVLNWDQDKKFSSIENAHASFVEISIKGLVRYFLRIDLVKSHIS 880
>RPOC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1384 Score = 53.1 bits (126), Expect = 2e-07 Identities = 29/53 (54%), Positives = 35/53 (66%), Gaps = 4/53 (7%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK----EKAGASLVXVRANDLIRDFLRIELVKSTIS 149 T+ Q VRTCLV+NW+Q+ K E+ A V V LIRDF+RI LVKS IS Sbjct: 833 TSIQLVRTCLVLNWDQDNKNSSLEEVRAFFVEVNTKGLIRDFIRIGLVKSHIS 885
>RPOC2_SILLA (Q589B8) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 51.2 bits (121), Expect = 8e-07 Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 4/53 (7%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK----EKAGASLVXVRANDLIRDFLRIELVKSTIS 149 T+ Q VRTCLV+NW Q++K E+A AS V VR N +IR FL+I L+ +S Sbjct: 822 TSIQLVRTCLVLNWNQDKKDSSIEEARASFVEVRTNGIIRYFLKIGLMNRALS 874
>RPOC2_CUCSA (Q4VZP3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1394 Score = 50.8 bits (120), Expect = 1e-06 Identities = 26/50 (52%), Positives = 36/50 (72%), Gaps = 4/50 (8%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK----EKAGASLVXVRANDLIRDFLRIELVKS 140 T+ Q VRTCL++NW++++K E A AS V V N L+R+FLRI+L KS Sbjct: 832 TSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKS 881
>RPOC2_PEA (P12227) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) (Fragment) Length = 1163 Score = 50.4 bits (119), Expect = 1e-06 Identities = 28/53 (52%), Positives = 33/53 (62%), Gaps = 4/53 (7%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK----EKAGASLVXVRANDLIRDFLRIELVKSTIS 149 T Q VRTCLV NW+ + E+A AS + VR N LI FLRI+LVKS S Sbjct: 622 TRIQLVRTCLVFNWDDGKNSSSIEEAPASFIEVRTNGLIEYFLRIDLVKSNTS 674
>RPOC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1376 Score = 48.1 bits (113), Expect = 6e-06 Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEEK-EKAGASLVXVRANDLIRDFLRIELVKSTIS 149 T+ Q VRTCLV+NW++ E+ A V V LI+DF+RI LVKS IS Sbjct: 828 TSIQLVRTCLVLNWDKNSSLEEVRAFFVEVSTKGLIQDFIRIGLVKSHIS 877
>RPOC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1330 Score = 39.3 bits (90), Expect = 0.003 Identities = 16/47 (34%), Positives = 33/47 (70%), Gaps = 1/47 (2%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEE-KEKAGASLVXVRANDLIRDFLRIELVKS 140 T+ Q ++TCL++NWE + ++A S + +R N +I++F +I L+++ Sbjct: 776 TDIQLIQTCLILNWETKVFIKEAHISFIKIRINKIIKNFFQINLIEN 822
>RPOC2_PSINU (Q8WI26) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1408 Score = 38.9 bits (89), Expect = 0.004 Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%) Frame = +3 Query: 12 QFVRTCLVVNWEQEEKEKAG-ASLVXVRANDLIRDFLRIELVKS 140 Q V+TCL+++WE++ KA S++ +R N +I+ FL+I L+ S Sbjct: 821 QLVQTCLLLDWEKKSPIKAAKTSILELRINKIIKTFLQISLLNS 864
>RPOC2_PINKO (Q85X62) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1209 Score = 37.0 bits (84), Expect = 0.015 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 2/47 (4%) Frame = +3 Query: 3 TNSQFVRTCLVVNWEQEE--KEKAGASLVXVRANDLIRDFLRIELVK 137 T+ VRTCL +WEQ + + +A SL+ VR N ++ + ++I L+K Sbjct: 674 TSIPLVRTCLGFDWEQIDSIESEAYVSLISVRTNKIVNNMVQISLMK 720
>RPOC2_PINTH (P41606) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1224 Score = 35.0 bits (79), Expect = 0.057 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 2/42 (4%) Frame = +3 Query: 18 VRTCLVVNWEQEE--KEKAGASLVXVRANDLIRDFLRIELVK 137 VRTC+ +WEQ + + +A SL+ VR N ++ + ++I L+K Sbjct: 681 VRTCIGFDWEQIDSIESEAYVSLISVRTNKIVNNMVQISLMK 722
>RPOC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 32.0 bits (71), Expect = 0.48 Identities = 13/45 (28%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Frame = +3 Query: 6 NSQFVRTCLVVNWEQEE-KEKAGASLVXVRANDLIRDFLRIELVK 137 N Q ++TCL+V+W+++ ++A S + ++ + + FL+I L++ Sbjct: 808 NIQLIQTCLLVHWKKKYFFKEANVSFLKIKTKNNFKTFLQISLIE 852 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,065,718 Number of Sequences: 219361 Number of extensions: 181679 Number of successful extensions: 467 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 445 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 446 length of database: 80,573,946 effective HSP length: 25 effective length of database: 75,089,921 effective search space used: 1802158104 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
