ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd27j15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475640.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2529 Score = 180 bits (91), Expect = 9e-43 Identities = 149/167 (89%), Gaps = 1/167 (0%) Strand = Plus / Plus Query: 1 ttctgcaggcacagcaccaaagtcgcagtgaagcggggcaaccagaagtcccaccaaggg 60 ||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 1568 ttctgcagg-acagcaccaaagttgcagtgaagcgtggcaaccagaagtctcaccaaggg 1626 Query: 61 ctcagagagttccggacagagatcgagctgctgtcagggctgcgacaccgtcacctcgtg 120 | || || |||||||| ||||||||||||||||| |||||||||||||| || |||||| Sbjct: 1627 attagggaattccggacggagatcgagctgctgtctgggctgcgacaccgccatctcgtg 1686 Query: 121 tcactcatcggatactgcgatgagcagaacgagatgatcttggtgta 167 || ||||| || ||||||||||||| || ||||||||||||||||| Sbjct: 1687 tcgctcattggttactgcgatgagcgcaatgagatgatcttggtgta 1733
>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099P06, complete sequence Length = 135117 Score = 180 bits (91), Expect = 9e-43 Identities = 149/167 (89%), Gaps = 1/167 (0%) Strand = Plus / Plus Query: 1 ttctgcaggcacagcaccaaagtcgcagtgaagcggggcaaccagaagtcccaccaaggg 60 ||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 34522 ttctgcagg-acagcaccaaagttgcagtgaagcgtggcaaccagaagtctcaccaaggg 34580 Query: 61 ctcagagagttccggacagagatcgagctgctgtcagggctgcgacaccgtcacctcgtg 120 | || || |||||||| ||||||||||||||||| |||||||||||||| || |||||| Sbjct: 34581 attagggaattccggacggagatcgagctgctgtctgggctgcgacaccgccatctcgtg 34640 Query: 121 tcactcatcggatactgcgatgagcagaacgagatgatcttggtgta 167 || ||||| || ||||||||||||| || ||||||||||||||||| Sbjct: 34641 tcgctcattggttactgcgatgagcgcaatgagatgatcttggtgta 34687
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 180 bits (91), Expect = 9e-43 Identities = 149/167 (89%), Gaps = 1/167 (0%) Strand = Plus / Plus Query: 1 ttctgcaggcacagcaccaaagtcgcagtgaagcggggcaaccagaagtcccaccaaggg 60 ||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 3612175 ttctgcagg-acagcaccaaagttgcagtgaagcgtggcaaccagaagtctcaccaaggg 3612233 Query: 61 ctcagagagttccggacagagatcgagctgctgtcagggctgcgacaccgtcacctcgtg 120 | || || |||||||| ||||||||||||||||| |||||||||||||| || |||||| Sbjct: 3612234 attagggaattccggacggagatcgagctgctgtctgggctgcgacaccgccatctcgtg 3612293 Query: 121 tcactcatcggatactgcgatgagcagaacgagatgatcttggtgta 167 || ||||| || ||||||||||||| || ||||||||||||||||| Sbjct: 3612294 tcgctcattggttactgcgatgagcgcaatgagatgatcttggtgta 3612340 Score = 44.1 bits (22), Expect = 0.13 Identities = 34/38 (89%) Strand = Plus / Minus Query: 103 cgacaccgtcacctcgtgtcactcatcggatactgcga 140 |||||||||||||| ||||| || ||||| |||||||| Sbjct: 14663280 cgacaccgtcaccttgtgtctctaatcgggtactgcga 14663243 Score = 44.1 bits (22), Expect = 0.13 Identities = 49/58 (84%) Strand = Plus / Plus Query: 110 gtcacctcgtgtcactcatcggatactgcgatgagcagaacgagatgatcttggtgta 167 |||| |||||||| || |||||||||||| | || |||| |||||||| |||||||| Sbjct: 14601359 gtcatctcgtgtctctaatcggatactgcaaggaaaagaatgagatgatattggtgta 14601416
>gb|BT024128.1| Zea mays clone EL01N0449F01 mRNA sequence Length = 1401 Score = 172 bits (87), Expect = 2e-40 Identities = 129/143 (90%) Strand = Plus / Plus Query: 25 gcagtgaagcggggcaaccagaagtcccaccaagggctcagagagttccggacagagatc 84 ||||| |||||||||||||||||||||||||||||||| || |||||||| |||||||| Sbjct: 249 gcagtaaagcggggcaaccagaagtcccaccaagggctgagggagttccgtacagagatt 308 Query: 85 gagctgctgtcagggctgcgacaccgtcacctcgtgtcactcatcggatactgcgatgag 144 || ||||||||||||||||||||||||| |||||||| ||||| || ||||| ||||| Sbjct: 309 gaattgctgtcagggctgcgacaccgtcatctcgtgtcgctcattggttactgtgatgaa 368 Query: 145 cagaacgagatgatcttggtgta 167 || |||||||||||||||||||| Sbjct: 369 cacaacgagatgatcttggtgta 391
>gb|AC169371.2| Sorghum bicolor clone SB_BBc0127F08, complete sequence Length = 70712 Score = 165 bits (83), Expect = 5e-38 Identities = 128/143 (89%) Strand = Plus / Minus Query: 25 gcagtgaagcggggcaaccagaagtcccaccaagggctcagagagttccggacagagatc 84 ||||| |||||||||||||||||||| ||||||||||| || ||||||||||| |||||| Sbjct: 44687 gcagtaaagcggggcaaccagaagtctcaccaagggctgagggagttccggacggagatc 44628 Query: 85 gagctgctgtcagggctgcgacaccgtcacctcgtgtcactcatcggatactgcgatgag 144 || ||||||||||| |||||||||||||| |||||||| ||||| || ||||| ||||| Sbjct: 44627 gaactgctgtcaggactgcgacaccgtcatctcgtgtcgctcattggttactgtgatgaa 44568 Query: 145 cagaacgagatgatcttggtgta 167 || || ||||||||||||||||| Sbjct: 44567 cacaatgagatgatcttggtgta 44545
>ref|NM_184430.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3038 Score = 81.8 bits (41), Expect = 6e-13 Identities = 80/93 (86%) Strand = Plus / Plus Query: 67 gagttccggacagagatcgagctgctgtcagggctgcgacaccgtcacctcgtgtcactc 126 |||||||| || ||||||||| |||| || || ||||| |||||||||||||| || ||| Sbjct: 1953 gagttccgcacggagatcgagatgctctccggcctgcgccaccgtcacctcgtctccctc 2012 Query: 127 atcggatactgcgatgagcagaacgagatgatc 159 ||||| |||||||| |||||| | ||||||||| Sbjct: 2013 atcggctactgcgacgagcaggatgagatgatc 2045
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 81.8 bits (41), Expect = 6e-13 Identities = 80/93 (86%) Strand = Plus / Plus Query: 67 gagttccggacagagatcgagctgctgtcagggctgcgacaccgtcacctcgtgtcactc 126 |||||||| || ||||||||| |||| || || ||||| |||||||||||||| || ||| Sbjct: 2984009 gagttccgcacggagatcgagatgctctccggcctgcgccaccgtcacctcgtctccctc 2984068 Query: 127 atcggatactgcgatgagcagaacgagatgatc 159 ||||| |||||||| |||||| | ||||||||| Sbjct: 2984069 atcggctactgcgacgagcaggatgagatgatc 2984101
>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0011G08 Length = 139490 Score = 81.8 bits (41), Expect = 6e-13 Identities = 80/93 (86%) Strand = Plus / Plus Query: 67 gagttccggacagagatcgagctgctgtcagggctgcgacaccgtcacctcgtgtcactc 126 |||||||| || ||||||||| |||| || || ||||| |||||||||||||| || ||| Sbjct: 65526 gagttccgcacggagatcgagatgctctccggcctgcgccaccgtcacctcgtctccctc 65585 Query: 127 atcggatactgcgatgagcagaacgagatgatc 159 ||||| |||||||| |||||| | ||||||||| Sbjct: 65586 atcggctactgcgacgagcaggatgagatgatc 65618
>dbj|AK099840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108C16, full insert sequence Length = 3038 Score = 81.8 bits (41), Expect = 6e-13 Identities = 80/93 (86%) Strand = Plus / Plus Query: 67 gagttccggacagagatcgagctgctgtcagggctgcgacaccgtcacctcgtgtcactc 126 |||||||| || ||||||||| |||| || || ||||| |||||||||||||| || ||| Sbjct: 1953 gagttccgcacggagatcgagatgctctccggcctgcgccaccgtcacctcgtctccctc 2012 Query: 127 atcggatactgcgatgagcagaacgagatgatc 159 ||||| |||||||| |||||| | ||||||||| Sbjct: 2013 atcggctactgcgacgagcaggatgagatgatc 2045
>gb|AF445788.1|AF445788 Triticum aestivum clone KSUK964 kinase R-like protein gene, partial cds Length = 536 Score = 79.8 bits (40), Expect = 2e-12 Identities = 115/140 (82%) Strand = Plus / Minus Query: 25 gcagtgaagcggggcaaccagaagtcccaccaagggctcagagagttccggacagagatc 84 ||||||||||| || |||| |||||||| ||||| |||| ||||||||||||||||| Sbjct: 491 gcagtgaagcgaggaaaccccaagtcccagcaaggtctcaatgagttccggacagagatt 432 Query: 85 gagctgctgtcagggctgcgacaccgtcacctcgtgtcactcatcggatactgcgatgag 144 ||||| || ||| | ||||| ||||| ||||| ||||| || || || ||||| ||||| Sbjct: 431 gagctcctttcacgtctgcgtcaccgccacctggtgtctctgattgggtactgtgatgaa 372 Query: 145 cagaacgagatgatcttggt 164 ||| |||||||||||||| Sbjct: 371 aggaatgagatgatcttggt 352
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 77.8 bits (39), Expect = 9e-12 Identities = 93/111 (83%) Strand = Plus / Plus Query: 58 gggctcagagagttccggacagagatcgagctgctgtcagggctgcgacaccgtcacctc 117 ||||||| |||||||| || ||||||||||||||||| |||||| ||||| |||||| Sbjct: 9606632 gggctcaacgagttccgcacggagatcgagctgctgtcccagctgcgccaccgccacctc 9606691 Query: 118 gtgtcactcatcggatactgcgatgagcagaacgagatgatcttggtgtac 168 || || |||||||| |||||||| |||| |||||||||| |||||||| Sbjct: 9606692 gtctcgctcatcggctactgcgacgagcgcggcgagatgatcctggtgtac 9606742
>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete sequence Length = 165113 Score = 77.8 bits (39), Expect = 9e-12 Identities = 93/111 (83%) Strand = Plus / Plus Query: 58 gggctcagagagttccggacagagatcgagctgctgtcagggctgcgacaccgtcacctc 117 ||||||| |||||||| || ||||||||||||||||| |||||| ||||| |||||| Sbjct: 27531 gggctcaacgagttccgcacggagatcgagctgctgtcccagctgcgccaccgccacctc 27590 Query: 118 gtgtcactcatcggatactgcgatgagcagaacgagatgatcttggtgtac 168 || || |||||||| |||||||| |||| |||||||||| |||||||| Sbjct: 27591 gtctcgctcatcggctactgcgacgagcgcggcgagatgatcctggtgtac 27641
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 77.8 bits (39), Expect = 9e-12 Identities = 93/111 (83%) Strand = Plus / Plus Query: 58 gggctcagagagttccggacagagatcgagctgctgtcagggctgcgacaccgtcacctc 117 ||||||| |||||||| || ||||||||||||||||| |||||| ||||| |||||| Sbjct: 9604753 gggctcaacgagttccgcacggagatcgagctgctgtcccagctgcgccaccgccacctc 9604812 Query: 118 gtgtcactcatcggatactgcgatgagcagaacgagatgatcttggtgtac 168 || || |||||||| |||||||| |||| |||||||||| |||||||| Sbjct: 9604813 gtctcgctcatcggctactgcgacgagcgcggcgagatgatcctggtgtac 9604863
>gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence Length = 131709 Score = 77.8 bits (39), Expect = 9e-12 Identities = 93/111 (83%) Strand = Plus / Minus Query: 58 gggctcagagagttccggacagagatcgagctgctgtcagggctgcgacaccgtcacctc 117 ||||||| |||||||| || ||||||||||||||||| |||||| ||||| |||||| Sbjct: 6054 gggctcaacgagttccgcacggagatcgagctgctgtcccagctgcgccaccgccacctc 5995 Query: 118 gtgtcactcatcggatactgcgatgagcagaacgagatgatcttggtgtac 168 || || |||||||| |||||||| |||| |||||||||| |||||||| Sbjct: 5994 gtctcgctcatcggctactgcgacgagcgcggcgagatgatcctggtgtac 5944
>dbj|AK100137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010L23, full insert sequence Length = 2989 Score = 77.8 bits (39), Expect = 9e-12 Identities = 93/111 (83%) Strand = Plus / Plus Query: 58 gggctcagagagttccggacagagatcgagctgctgtcagggctgcgacaccgtcacctc 117 ||||||| |||||||| || ||||||||||||||||| |||||| ||||| |||||| Sbjct: 1843 gggctcaacgagttccgcacggagatcgagctgctgtcccagctgcgccaccgccacctc 1902 Query: 118 gtgtcactcatcggatactgcgatgagcagaacgagatgatcttggtgtac 168 || || |||||||| |||||||| |||| |||||||||| |||||||| Sbjct: 1903 gtctcgctcatcggctactgcgacgagcgcggcgagatgatcctggtgtac 1953
>gb|BT018566.1| Zea mays clone EL01N0441H06.d mRNA sequence Length = 1305 Score = 75.8 bits (38), Expect = 4e-11 Identities = 86/102 (84%) Strand = Plus / Plus Query: 67 gagttccggacagagatcgagctgctgtcagggctgcgacaccgtcacctcgtgtcactc 126 |||||||| || |||||||||||||| || ||||||| ||||| ||||| ||||| ||| Sbjct: 31 gagttccgcacggagatcgagctgctctcccggctgcggcaccgccacctggtgtcgctc 90 Query: 127 atcggatactgcgatgagcagaacgagatgatcttggtgtac 168 ||||| |||||||| |||| |||||||||| |||||||| Sbjct: 91 atcggctactgcgacgagcgcggcgagatgatcctggtgtac 132
>gb|AF529042.1| Musa acuminata clone PTO-06 Pto-like serine/threonine kinase gene, partial cds Length = 548 Score = 71.9 bits (36), Expect = 6e-10 Identities = 69/80 (86%) Strand = Plus / Minus Query: 79 gagatcgagctgctgtcagggctgcgacaccgtcacctcgtgtcactcatcggatactgc 138 ||||||||||||||||| | ||||| ||||| ||||| || || |||||||| |||||| Sbjct: 437 gagatcgagctgctgtcgcgcctgcgccaccgccacctggtttctctcatcgggtactgc 378 Query: 139 gatgagcagaacgagatgat 158 || ||| ||||||||||||| Sbjct: 377 gacgagaagaacgagatgat 358
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 67.9 bits (34), Expect = 9e-09 Identities = 121/150 (80%) Strand = Plus / Plus Query: 15 caccaaagtcgcagtgaagcggggcaaccagaagtcccaccaagggctcagagagttccg 74 |||||| || ||||||||||| || |||| |||||| || ||||| |||| |||||||| Sbjct: 13142772 caccaaggttgcagtgaagcgagggaacccgaagtctcagcaaggtctcaatgagttccg 13142831 Query: 75 gacagagatcgagctgctgtcagggctgcgacaccgtcacctcgtgtcactcatcggata 134 ||||||||||| || || ||| ||||||| ||||| || || ||||| || || || || Sbjct: 13142832 tacagagatcgaactcctttcacggctgcggcaccgccatctggtgtccctgattgggta 13142891 Query: 135 ctgcgatgagcagaacgagatgatcttggt 164 || ||||| ||| |||||||||||||| Sbjct: 13142892 ttgtgatgaaaggaatgagatgatcttggt 13142921
>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0012F14 Length = 168629 Score = 67.9 bits (34), Expect = 9e-09 Identities = 121/150 (80%) Strand = Plus / Plus Query: 15 caccaaagtcgcagtgaagcggggcaaccagaagtcccaccaagggctcagagagttccg 74 |||||| || ||||||||||| || |||| |||||| || ||||| |||| |||||||| Sbjct: 59960 caccaaggttgcagtgaagcgagggaacccgaagtctcagcaaggtctcaatgagttccg 60019 Query: 75 gacagagatcgagctgctgtcagggctgcgacaccgtcacctcgtgtcactcatcggata 134 ||||||||||| || || ||| ||||||| ||||| || || ||||| || || || || Sbjct: 60020 tacagagatcgaactcctttcacggctgcggcaccgccatctggtgtccctgattgggta 60079 Query: 135 ctgcgatgagcagaacgagatgatcttggt 164 || ||||| ||| |||||||||||||| Sbjct: 60080 ttgtgatgaaaggaatgagatgatcttggt 60109
>dbj|AK065468.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020G14, full insert sequence Length = 3151 Score = 67.9 bits (34), Expect = 9e-09 Identities = 121/150 (80%) Strand = Plus / Plus Query: 15 caccaaagtcgcagtgaagcggggcaaccagaagtcccaccaagggctcagagagttccg 74 |||||| || ||||||||||| || |||| |||||| || ||||| |||| |||||||| Sbjct: 1890 caccaaggttgcagtgaagcgagggaacccgaagtctcagcaaggtctcaatgagttccg 1949 Query: 75 gacagagatcgagctgctgtcagggctgcgacaccgtcacctcgtgtcactcatcggata 134 ||||||||||| || || ||| ||||||| ||||| || || ||||| || || || || Sbjct: 1950 tacagagatcgaactcctttcacggctgcggcaccgccatctggtgtccctgattgggta 2009 Query: 135 ctgcgatgagcagaacgagatgatcttggt 164 || ||||| ||| |||||||||||||| Sbjct: 2010 ttgtgatgaaaggaatgagatgatcttggt 2039
>gb|AY693371.1| Mangifera indica serine/threonine kinase gene, partial cds Length = 537 Score = 60.0 bits (30), Expect = 2e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 127 atcggatactgcgatgagcagaacgagatgatcttggt 164 ||||||||||| ||||||||||| |||||||||||||| Sbjct: 148 atcggatactgtgatgagcagaatgagatgatcttggt 185
>ref|XM_506161.1| PREDICTED Oryza sativa (japonica cultivar-group), P0022E03.2 mRNA Length = 3539 Score = 46.1 bits (23), Expect = 0.033 Identities = 68/83 (81%) Strand = Plus / Plus Query: 79 gagatcgagctgctgtcagggctgcgacaccgtcacctcgtgtcactcatcggatactgc 138 ||||||||| | || ||| | ||||||||||| ||||| ||||| | || || ||||| Sbjct: 2417 gagatcgagatcctctcaagactgcgacaccgacaccttgtgtccttgattggctactgt 2476 Query: 139 gatgagcagaacgagatgatctt 161 |||||||| || ||||||||||| Sbjct: 2477 gatgagcaaaatgagatgatctt 2499
>ref|XM_476621.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3109 Score = 46.1 bits (23), Expect = 0.033 Identities = 68/83 (81%) Strand = Plus / Plus Query: 79 gagatcgagctgctgtcagggctgcgacaccgtcacctcgtgtcactcatcggatactgc 138 ||||||||| | || ||| | ||||||||||| ||||| ||||| | || || ||||| Sbjct: 1968 gagatcgagatcctctcaagactgcgacaccgacaccttgtgtccttgattggctactgt 2027 Query: 139 gatgagcagaacgagatgatctt 161 |||||||| || ||||||||||| Sbjct: 2028 gatgagcaaaatgagatgatctt 2050
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.033 Identities = 68/83 (81%) Strand = Plus / Minus Query: 79 gagatcgagctgctgtcagggctgcgacaccgtcacctcgtgtcactcatcggatactgc 138 ||||||||| | || ||| | ||||||||||| ||||| ||||| | || || ||||| Sbjct: 2491569 gagatcgagatcctctcaagactgcgacaccgacaccttgtgtccttgattggctactgt 2491510 Query: 139 gatgagcagaacgagatgatctt 161 |||||||| || ||||||||||| Sbjct: 2491509 gatgagcaaaatgagatgatctt 2491487
>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022E03 Length = 163032 Score = 46.1 bits (23), Expect = 0.033 Identities = 68/83 (81%) Strand = Plus / Minus Query: 79 gagatcgagctgctgtcagggctgcgacaccgtcacctcgtgtcactcatcggatactgc 138 ||||||||| | || ||| | ||||||||||| ||||| ||||| | || || ||||| Sbjct: 56549 gagatcgagatcctctcaagactgcgacaccgacaccttgtgtccttgattggctactgt 56490 Query: 139 gatgagcagaacgagatgatctt 161 |||||||| || ||||||||||| Sbjct: 56489 gatgagcaaaatgagatgatctt 56467
>dbj|AK105705.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E02, full insert sequence Length = 2030 Score = 46.1 bits (23), Expect = 0.033 Identities = 68/83 (81%) Strand = Plus / Plus Query: 79 gagatcgagctgctgtcagggctgcgacaccgtcacctcgtgtcactcatcggatactgc 138 ||||||||| | || ||| | ||||||||||| ||||| ||||| | || || ||||| Sbjct: 887 gagatcgagatcctctcaagactgcgacaccgacaccttgtgtccttgattggctactgt 946 Query: 139 gatgagcagaacgagatgatctt 161 |||||||| || ||||||||||| Sbjct: 947 gatgagcaaaatgagatgatctt 969
>dbj|AK102834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109J23, full insert sequence Length = 3540 Score = 46.1 bits (23), Expect = 0.033 Identities = 68/83 (81%) Strand = Plus / Plus Query: 79 gagatcgagctgctgtcagggctgcgacaccgtcacctcgtgtcactcatcggatactgc 138 ||||||||| | || ||| | ||||||||||| ||||| ||||| | || || ||||| Sbjct: 2418 gagatcgagatcctctcaagactgcgacaccgacaccttgtgtccttgattggctactgt 2477 Query: 139 gatgagcagaacgagatgatctt 161 |||||||| || ||||||||||| Sbjct: 2478 gatgagcaaaatgagatgatctt 2500
>dbj|AK099551.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033H24, full insert sequence Length = 3109 Score = 46.1 bits (23), Expect = 0.033 Identities = 68/83 (81%) Strand = Plus / Plus Query: 79 gagatcgagctgctgtcagggctgcgacaccgtcacctcgtgtcactcatcggatactgc 138 ||||||||| | || ||| | ||||||||||| ||||| ||||| | || || ||||| Sbjct: 1968 gagatcgagatcctctcaagactgcgacaccgacaccttgtgtccttgattggctactgt 2027 Query: 139 gatgagcagaacgagatgatctt 161 |||||||| || ||||||||||| Sbjct: 2028 gatgagcaaaatgagatgatctt 2050
>ref|NM_102794.1| Arabidopsis thaliana kinase AT1G30570 mRNA, complete cds Length = 2550 Score = 44.1 bits (22), Expect = 0.13 Identities = 28/30 (93%) Strand = Plus / Plus Query: 135 ctgcgatgagcagaacgagatgatcttggt 164 |||||||||||| || |||||||||||||| Sbjct: 1746 ctgcgatgagcacaatgagatgatcttggt 1775
>gb|AC124141.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0065C11, complete sequence Length = 141578 Score = 44.1 bits (22), Expect = 0.13 Identities = 49/58 (84%) Strand = Plus / Plus Query: 110 gtcacctcgtgtcactcatcggatactgcgatgagcagaacgagatgatcttggtgta 167 |||| |||||||| || |||||||||||| | || |||| |||||||| |||||||| Sbjct: 139364 gtcatctcgtgtctctaatcggatactgcaaggaaaagaatgagatgatattggtgta 139421
>gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0059K16, complete sequence Length = 139615 Score = 44.1 bits (22), Expect = 0.13 Identities = 34/38 (89%) Strand = Plus / Minus Query: 103 cgacaccgtcacctcgtgtcactcatcggatactgcga 140 |||||||||||||| ||||| || ||||| |||||||| Sbjct: 79574 cgacaccgtcaccttgtgtctctaatcgggtactgcga 79537 Score = 44.1 bits (22), Expect = 0.13 Identities = 49/58 (84%) Strand = Plus / Plus Query: 110 gtcacctcgtgtcactcatcggatactgcgatgagcagaacgagatgatcttggtgta 167 |||| |||||||| || |||||||||||| | || |||| |||||||| |||||||| Sbjct: 17653 gtcatctcgtgtctctaatcggatactgcaaggaaaagaatgagatgatattggtgta 17710
>gb|AF363809.1|AF363809 Phaseolus vulgaris Pto-like kinase SG2 gene, partial cds Length = 516 Score = 44.1 bits (22), Expect = 0.13 Identities = 46/54 (85%) Strand = Plus / Plus Query: 115 ctcgtgtcactcatcggatactgcgatgagcagaacgagatgatcttggtgtac 168 |||||||| || ||||||| |||| | ||| ||||||||||||| |||||||| Sbjct: 133 ctcgtgtccctaatcggattctgcaacgagatgaacgagatgatcctggtgtac 186
>gb|AC007060.3|T5I8 Arabidopsis thaliana chromosome 1 BAC T5I8 sequence, complete sequence Length = 96183 Score = 44.1 bits (22), Expect = 0.13 Identities = 28/30 (93%) Strand = Plus / Plus Query: 135 ctgcgatgagcagaacgagatgatcttggt 164 |||||||||||| || |||||||||||||| Sbjct: 5929 ctgcgatgagcacaatgagatgatcttggt 5958
>dbj|AK120223.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041M06, full insert sequence Length = 2729 Score = 44.1 bits (22), Expect = 0.13 Identities = 34/38 (89%) Strand = Plus / Plus Query: 103 cgacaccgtcacctcgtgtcactcatcggatactgcga 140 |||||||||||||| ||||| || ||||| |||||||| Sbjct: 2079 cgacaccgtcaccttgtgtctctaatcgggtactgcga 2116
>dbj|AK065965.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047H01, full insert sequence Length = 3040 Score = 44.1 bits (22), Expect = 0.13 Identities = 49/58 (84%) Strand = Plus / Plus Query: 110 gtcacctcgtgtcactcatcggatactgcgatgagcagaacgagatgatcttggtgta 167 |||| |||||||| || |||||||||||| | || |||| |||||||| |||||||| Sbjct: 2024 gtcatctcgtgtctctaatcggatactgcaaggaaaagaatgagatgatattggtgta 2081
>gb|AF399610.1| Homo sapiens clone OR11G2 olfactory receptor gene, partial cds Length = 650 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 agaacgagatgatcttggtgt 166 ||||||||||||||||||||| Sbjct: 82 agaacgagatgatcttggtgt 62
>ref|NM_001005503.1| Homo sapiens olfactory receptor, family 11, subfamily G, member 2 (OR11G2), mRNA Length = 1038 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 agaacgagatgatcttggtgt 166 ||||||||||||||||||||| Sbjct: 397 agaacgagatgatcttggtgt 377
>tpg|BK004453.1| TPA: TPA_exp: Homo sapiens olfactory receptor OR14-34 gene, complete cds Length = 1038 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 agaacgagatgatcttggtgt 166 ||||||||||||||||||||| Sbjct: 397 agaacgagatgatcttggtgt 377
>gb|AF363818.1|AF363818 Phaseolus vulgaris Pto-like kinase OG6 gene, partial cds Length = 516 Score = 42.1 bits (21), Expect = 0.52 Identities = 39/45 (86%) Strand = Plus / Plus Query: 115 ctcgtgtcactcatcggatactgcgatgagcagaacgagatgatc 159 |||||||| || |||||||||||| | ||| ||||||||||||| Sbjct: 133 ctcgtgtccctaatcggatactgcaacgagatgaacgagatgatc 177
>gb|AF363817.1|AF363817 Phaseolus vulgaris Pto-like kinase OG7 gene, partial cds Length = 516 Score = 42.1 bits (21), Expect = 0.52 Identities = 39/45 (86%) Strand = Plus / Plus Query: 115 ctcgtgtcactcatcggatactgcgatgagcagaacgagatgatc 159 |||||||| || |||||||||||| | ||| ||||||||||||| Sbjct: 133 ctcgtgtccctaatcggatactgcaacgagatgaacgagatgatc 177
>gb|AF290413.1|AF290413 Oryza officinalis serine/threonine protein kinase (R1) gene, partial cds Length = 540 Score = 42.1 bits (21), Expect = 0.52 Identities = 27/29 (93%) Strand = Plus / Plus Query: 67 gagttccggacagagatcgagctgctgtc 95 ||||||| ||||||||||||| ||||||| Sbjct: 88 gagttccagacagagatcgagatgctgtc 116
>emb|AL356019.5|CNS05TD9 Human chromosome 14 DNA sequence BAC C-2292M16 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 177745 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 agaacgagatgatcttggtgt 166 ||||||||||||||||||||| Sbjct: 57887 agaacgagatgatcttggtgt 57867
>dbj|AB065897.1| Homo sapiens gene for seven transmembrane helix receptor, complete cds, isolate:CBRC7TM_460 Length = 1336 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 agaacgagatgatcttggtgt 166 ||||||||||||||||||||| Sbjct: 495 agaacgagatgatcttggtgt 475
>ref|NM_125362.2| Arabidopsis thaliana kinase AT5G59700 mRNA, complete cds Length = 2861 Score = 40.1 bits (20), Expect = 2.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 127 atcggatactgcgatgagcagaacgagatgat 158 |||||||||||||| ||| | ||||||||||| Sbjct: 1767 atcggatactgcgacgagaataacgagatgat 1798
>dbj|AB006705.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTH12 Length = 74877 Score = 40.1 bits (20), Expect = 2.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 127 atcggatactgcgatgagcagaacgagatgat 158 |||||||||||||| ||| | ||||||||||| Sbjct: 41823 atcggatactgcgacgagaataacgagatgat 41792
>ref|XM_511127.1| PREDICTED: Pan troglodytes similar to polycystic kidney disease 1-like 2 (LOC454266), mRNA Length = 7321 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 gagctgctgtcagggctgc 103 ||||||||||||||||||| Sbjct: 1705 gagctgctgtcagggctgc 1723
>ref|NM_182740.1| Homo sapiens polycystic kidney disease 1-like 2 (PKD1L2), transcript variant 2, mRNA Length = 7416 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 gagctgctgtcagggctgc 103 ||||||||||||||||||| Sbjct: 1342 gagctgctgtcagggctgc 1360
>ref|NM_052892.2| Homo sapiens polycystic kidney disease 1-like 2 (PKD1L2), transcript variant 1, mRNA Length = 7621 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 gagctgctgtcagggctgc 103 ||||||||||||||||||| Sbjct: 1342 gagctgctgtcagggctgc 1360
>gb|AC126683.4| Mus musculus BAC clone RP23-62G15 from 6, complete sequence Length = 167297 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 agcaccaaagtcgcagtga 31 ||||||||||||||||||| Sbjct: 50989 agcaccaaagtcgcagtga 50971
>emb|CR689030.2|CNS0FULU Tetraodon nigroviridis full-length cDNA Length = 2041 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 gagctgctgtcagggctgc 103 ||||||||||||||||||| Sbjct: 26 gagctgctgtcagggctgc 8
>gb|AY164483.1| Homo sapiens polycystic kidney disease 1-like 2 (PKD1L2) mRNA, complete cds Length = 7380 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 gagctgctgtcagggctgc 103 ||||||||||||||||||| Sbjct: 1342 gagctgctgtcagggctgc 1360
>gb|AC160998.4| Mus musculus BAC clone RP23-78N12 from chromosome 6, complete sequence Length = 279848 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 agcaccaaagtcgcagtga 31 ||||||||||||||||||| Sbjct: 15886 agcaccaaagtcgcagtga 15868
>gb|AC131888.1| Homo sapiens chromosome 16 clone RP11-626G3, complete sequence Length = 162957 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 gagctgctgtcagggctgc 103 ||||||||||||||||||| Sbjct: 87874 gagctgctgtcagggctgc 87892
>gb|AC023085.7| Homo sapiens chromosome 11, clone RP11-513I7, complete sequence Length = 175063 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 gcaaccagaagtcccacca 56 ||||||||||||||||||| Sbjct: 172245 gcaaccagaagtcccacca 172263
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 agagttccggacagagatc 84 ||||||||||||||||||| Sbjct: 1874570 agagttccggacagagatc 1874552
>gb|AC087276.13| Homo sapiens chromosome 11, clone RP11-484D2, complete sequence Length = 204109 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 gcaaccagaagtcccacca 56 ||||||||||||||||||| Sbjct: 58336 gcaaccagaagtcccacca 58354 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 982,382 Number of Sequences: 3902068 Number of extensions: 982382 Number of successful extensions: 62551 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62310 Number of HSP's gapped (non-prelim): 238 length of query: 168 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 146 effective length of database: 17,147,199,772 effective search space: 2503491166712 effective search space used: 2503491166712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
