ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27j04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102370.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 5e-61
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 131 1e-27
3gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare str... 131 1e-27
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 131 1e-27
5gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome... 74 3e-10
6ref|NM_186089.2| Oryza sativa (japonica cultivar-group), mRNA 56 6e-05
7ref|XM_506548.1| PREDICTED Oryza sativa (japonica cultivar-group... 56 6e-05
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 56 6e-05
9dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic D... 56 6e-05
10dbj|AK071159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 6e-05
11dbj|AK060587.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 6e-05
12gb|BT013601.1| Lycopersicon esculentum clone 132366F, mRNA sequence 50 0.004
13ref|NM_103489.2| Arabidopsis thaliana phosphoric diester hydrola... 42 0.89
14ref|XM_475311.1| Oryza sativa (japonica cultivar-group), predic... 42 0.89
15gb|AY046921.1| Arabidopsis thaliana tubby-like protein 5 mRNA, c... 42 0.89
16gb|AY122972.1| Arabidopsis thaliana unknown protein (At1g43640) ... 42 0.89
17gb|AY072154.1| Arabidopsis thaliana unknown protein (At1g43640) ... 42 0.89
18gb|AF424565.1|AF424565 Arabidopsis thaliana At1g43640/T10P12_16 ... 42 0.89
19dbj|AK103583.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.89
20dbj|AK074017.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.89
21dbj|AK069622.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.89
22gb|AC102429.11| Mus musculus chromosome 18, clone RP24-93K11, co... 40 3.5
23emb|AL157893.16| Human DNA sequence from clone RP11-322M19 on ch... 40 3.5
24emb|AL135925.10| Human DNA sequence from clone RP11-182L21 on ch... 40 3.5
25emb|AL606528.7| Mouse DNA sequence from clone RP23-45H23 on chro... 40 3.5
26gb|AC068139.6| Homo sapiens chromosome 10 clone RP11-506M13, com... 40 3.5
27gb|AC008629.7| Homo sapiens chromosome 5 clone CTB-161M19, compl... 40 3.5
28gb|AC010462.6| Homo sapiens chromosome 5 clone CTD-2276M2, compl... 40 3.5
29gb|AC009452.21| Homo sapiens chromosome 17, clone RP11-4F22, com... 40 3.5
30emb|AL132715.3|CNS01DTE Human chromosome 14 DNA sequence BAC R-3... 40 3.5
31dbj|AP003419.3| Homo sapiens genomic DNA, chromosome 11 clone:CT... 40 3.5
32gb|AC006263.1|AC006263 Homo sapiens chromosome 17, clone hCIT.18... 40 3.5
33dbj|AP002776.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.5
34gb|AC132625.3| Mus musculus BAC clone RP23-101M7 from 1, complet... 40 3.5
35emb|AL132656.15|HSA119F19 Human DNA sequence from clone RP11-119... 40 3.5 
>dbj|AK102370.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091L01, full
           insert sequence
          Length = 2102

 Score =  242 bits (122), Expect = 5e-61
 Identities = 213/244 (87%)
 Strand = Plus / Plus

                                                                       
Query: 18  atgggaagttcctgcttgctgcacgcaaatgcagaaagcctacatacacagactacctaa 77
           ||||||||||||| |||||||||||||||||||| ||||| |||| |||||||||||| |
Sbjct: 128 atgggaagttcctacttgctgcacgcaaatgcaggaagcccacatgcacagactacctga 187

                                                                       
Query: 78  tttatcttgatatggctggtatttcaaagggaagcagcacctacattggcaagctaaggt 137
           |||  ||||| |||  || ||| |||||||| |||| |||||| ||||||||||||||||
Sbjct: 188 tttcccttgacatgagtgatatgtcaaaggggagcaacacctatattggcaagctaaggt 247

                                                                       
Query: 138 cgaactttctgggaacaaagtttaccgtctatgatgctcatccaccgtatgatggagctg 197
           | |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 248 caaactttctcggaacaaagtttaccgtctatgatgcccatccaccatatgatggagctg 307

                                                                       
Query: 198 cggtctcaaaaaggcggncttctcatgtgattggnttgaaccaggtctccccaagagttc 257
             ||||||||||| ||| || | | |||| ||||  ||||||| |||||||| |||||||
Sbjct: 308 ttgtctcaaaaagtcggtctgcacgtgtggttggtctgaaccaagtctccccgagagttc 367

               
Query: 258 ctgc 261
           ||||
Sbjct: 368 ctgc 371
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  131 bits (66), Expect = 1e-27
 Identities = 112/128 (87%)
 Strand = Plus / Minus

                                                                            
Query: 134      aggtcgaactttctgggaacaaagtttaccgtctatgatgctcatccaccgtatgatgga 193
                ||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 13141277 aggtcaaactttctcggaacaaagtttaccgtctatgatgcccatccaccatatgatgga 13141218

                                                                            
Query: 194      gctgcggtctcaaaaaggcggncttctcatgtgattggnttgaaccaggtctccccaaga 253
                ||||  ||||||||||| ||| || | | |||| ||||  ||||||| |||||||| |||
Sbjct: 13141217 gctgttgtctcaaaaagtcggtctgcacgtgtggttggtctgaaccaagtctccccgaga 13141158

                        
Query: 254      gttcctgc 261
                ||||||||
Sbjct: 13141157 gttcctgc 13141150



 Score =  119 bits (60), Expect = 5e-24
 Identities = 105/120 (87%)
 Strand = Plus / Minus

                                                                            
Query: 18       atgggaagttcctgcttgctgcacgcaaatgcagaaagcctacatacacagactacctaa 77
                ||||||||||||| |||||||||||||||||||| ||||| |||| |||||||||||| |
Sbjct: 13141764 atgggaagttcctacttgctgcacgcaaatgcaggaagcccacatgcacagactacctga 13141705

                                                                            
Query: 78       tttatcttgatatggctggtatttcaaagggaagcagcacctacattggcaagctaaggt 137
                |||  ||||| |||  || ||| |||||||| |||| |||||| ||||||||||||||||
Sbjct: 13141704 tttcccttgacatgagtgatatgtcaaaggggagcaacacctatattggcaagctaaggt 13141645



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                         
Query: 152      acaaagtttaccgtctatgatgctcatccaccgtatgatggagctgcggtctcaaaa 208
                |||||||||||| |||||||||| |||||||| |||||||||||||  |||||||||
Sbjct: 13058967 acaaagtttaccatctatgatgcccatccaccatatgatggagctgttgtctcaaaa 13059023
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>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07,
             from chromosome 3, complete sequence
          Length = 151173

 Score =  131 bits (66), Expect = 1e-27
 Identities = 112/128 (87%)
 Strand = Plus / Plus

                                                                         
Query: 134   aggtcgaactttctgggaacaaagtttaccgtctatgatgctcatccaccgtatgatgga 193
             ||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 85361 aggtcaaactttctcggaacaaagtttaccgtctatgatgcccatccaccatatgatgga 85420

                                                                         
Query: 194   gctgcggtctcaaaaaggcggncttctcatgtgattggnttgaaccaggtctccccaaga 253
             ||||  ||||||||||| ||| || | | |||| ||||  ||||||| |||||||| |||
Sbjct: 85421 gctgttgtctcaaaaagtcggtctgcacgtgtggttggtctgaaccaagtctccccgaga 85480

                     
Query: 254   gttcctgc 261
             ||||||||
Sbjct: 85481 gttcctgc 85488



 Score =  119 bits (60), Expect = 5e-24
 Identities = 105/120 (87%)
 Strand = Plus / Plus

                                                                         
Query: 18    atgggaagttcctgcttgctgcacgcaaatgcagaaagcctacatacacagactacctaa 77
             ||||||||||||| |||||||||||||||||||| ||||| |||| |||||||||||| |
Sbjct: 84874 atgggaagttcctacttgctgcacgcaaatgcaggaagcccacatgcacagactacctga 84933

                                                                         
Query: 78    tttatcttgatatggctggtatttcaaagggaagcagcacctacattggcaagctaaggt 137
             |||  ||||| |||  || ||| |||||||| |||| |||||| ||||||||||||||||
Sbjct: 84934 tttcccttgacatgagtgatatgtcaaaggggagcaacacctatattggcaagctaaggt 84993
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  131 bits (66), Expect = 1e-27
 Identities = 112/128 (87%)
 Strand = Plus / Minus

                                                                            
Query: 134      aggtcgaactttctgggaacaaagtttaccgtctatgatgctcatccaccgtatgatgga 193
                ||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 13138052 aggtcaaactttctcggaacaaagtttaccgtctatgatgcccatccaccatatgatgga 13137993

                                                                            
Query: 194      gctgcggtctcaaaaaggcggncttctcatgtgattggnttgaaccaggtctccccaaga 253
                ||||  ||||||||||| ||| || | | |||| ||||  ||||||| |||||||| |||
Sbjct: 13137992 gctgttgtctcaaaaagtcggtctgcacgtgtggttggtctgaaccaagtctccccgaga 13137933

                        
Query: 254      gttcctgc 261
                ||||||||
Sbjct: 13137932 gttcctgc 13137925



 Score =  119 bits (60), Expect = 5e-24
 Identities = 105/120 (87%)
 Strand = Plus / Minus

                                                                            
Query: 18       atgggaagttcctgcttgctgcacgcaaatgcagaaagcctacatacacagactacctaa 77
                ||||||||||||| |||||||||||||||||||| ||||| |||| |||||||||||| |
Sbjct: 13138539 atgggaagttcctacttgctgcacgcaaatgcaggaagcccacatgcacagactacctga 13138480

                                                                            
Query: 78       tttatcttgatatggctggtatttcaaagggaagcagcacctacattggcaagctaaggt 137
                |||  ||||| |||  || ||| |||||||| |||| |||||| ||||||||||||||||
Sbjct: 13138479 tttcccttgacatgagtgatatgtcaaaggggagcaacacctatattggcaagctaaggt 13138420



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                         
Query: 152      acaaagtttaccgtctatgatgctcatccaccgtatgatggagctgcggtctcaaaa 208
                |||||||||||| |||||||||| |||||||| |||||||||||||  |||||||||
Sbjct: 13055742 acaaagtttaccatctatgatgcccatccaccatatgatggagctgttgtctcaaaa 13055798
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>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11,
              complete sequence
          Length = 176637

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                       
Query: 152    acaaagtttaccgtctatgatgctcatccaccgtatgatggagctgcggtctcaaaa 208
              |||||||||||| |||||||||| |||||||| |||||||||||||  |||||||||
Sbjct: 136665 acaaagtttaccatctatgatgcccatccaccatatgatggagctgttgtctcaaaa 136721
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>ref|NM_186089.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1687

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 13  tgataatgggaagttcctgcttgctgcacgcaaatg 48
           |||| ||||||||||||| |||||||||||||||||
Sbjct: 641 tgatgatgggaagttcctacttgctgcacgcaaatg 676
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>ref|XM_506548.1| PREDICTED Oryza sativa (japonica cultivar-group), P0450A04.117 mRNA
          Length = 1949

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 13  tgataatgggaagttcctgcttgctgcacgcaaatg 48
           |||| ||||||||||||| |||||||||||||||||
Sbjct: 696 tgatgatgggaagttcctacttgctgcacgcaaatg 731
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                    
Query: 13       tgataatgggaagttcctgcttgctgcacgcaaatg 48
                |||| ||||||||||||| |||||||||||||||||
Sbjct: 28121564 tgatgatgggaagttcctacttgctgcacgcaaatg 28121599
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>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0450A04
          Length = 162545

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                  
Query: 13     tgataatgggaagttcctgcttgctgcacgcaaatg 48
              |||| ||||||||||||| |||||||||||||||||
Sbjct: 104860 tgatgatgggaagttcctacttgctgcacgcaaatg 104895
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>dbj|AK071159.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078O15, full
           insert sequence
          Length = 1687

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 13  tgataatgggaagttcctgcttgctgcacgcaaatg 48
           |||| ||||||||||||| |||||||||||||||||
Sbjct: 641 tgatgatgggaagttcctacttgctgcacgcaaatg 676
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>dbj|AK060587.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-B07, full
           insert sequence
          Length = 1948

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 13  tgataatgggaagttcctgcttgctgcacgcaaatg 48
           |||| ||||||||||||| |||||||||||||||||
Sbjct: 696 tgatgatgggaagttcctacttgctgcacgcaaatg 731
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>gb|BT013601.1| Lycopersicon esculentum clone 132366F, mRNA sequence
          Length = 1781

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 110 agcagcacctacattggcaagctaaggtcgaactttctgggaacaaagtttaccgtctat 169
           ||||||||||||||||| ||||| || || |||||  |||| || ||||| || ||||||
Sbjct: 614 agcagcacctacattgggaagctgagatccaacttcttggggaccaagttcactgtctat 673

                
Query: 170 gatgc 174
           |||||
Sbjct: 674 gatgc 678
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>ref|NM_103489.2| Arabidopsis thaliana phosphoric diester hydrolase/ transcription
           factor AT1G43640 mRNA, complete cds
          Length = 1594

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 109 aagcagcacctacattggcaagctaaggtcgaactttctgggaacaaagttta 161
           ||||||||| ||||||||||| || | ||| |||||||| || ||||| ||||
Sbjct: 669 aagcagcacttacattggcaaactgaagtctaactttctagggacaaaattta 721
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>ref|XM_475311.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1338

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 109 aagcagcacctacattggcaagctaaggtcgaactttctgggaacaaagttta 161
           |||||||||||| ||||| || |||||||| ||||| || || ||||| ||||
Sbjct: 561 aagcagcacctatattggaaaactaaggtcaaacttccttggcacaaaattta 613
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>gb|AY046921.1| Arabidopsis thaliana tubby-like protein 5 mRNA, complete cds
          Length = 1290

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 109 aagcagcacctacattggcaagctaaggtcgaactttctgggaacaaagttta 161
           ||||||||| ||||||||||| || | ||| |||||||| || ||||| ||||
Sbjct: 549 aagcagcacttacattggcaaactgaagtctaactttctagggacaaaattta 601
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>gb|AY122972.1| Arabidopsis thaliana unknown protein (At1g43640) mRNA, complete cds
          Length = 1321

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 109 aagcagcacctacattggcaagctaaggtcgaactttctgggaacaaagttta 161
           ||||||||| ||||||||||| || | ||| |||||||| || ||||| ||||
Sbjct: 549 aagcagcacttacattggcaaactgaagtctaactttctagggacaaaattta 601
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>gb|AY072154.1| Arabidopsis thaliana unknown protein (At1g43640) mRNA, complete cds
          Length = 1582

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 109 aagcagcacctacattggcaagctaaggtcgaactttctgggaacaaagttta 161
           ||||||||| ||||||||||| || | ||| |||||||| || ||||| ||||
Sbjct: 668 aagcagcacttacattggcaaactgaagtctaactttctagggacaaaattta 720
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>gb|AF424565.1|AF424565 Arabidopsis thaliana At1g43640/T10P12_16 mRNA, complete cds
          Length = 1567

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 109 aagcagcacctacattggcaagctaaggtcgaactttctgggaacaaagttta 161
           ||||||||| ||||||||||| || | ||| |||||||| || ||||| ||||
Sbjct: 668 aagcagcacttacattggcaaactgaagtctaactttctagggacaaaattta 720
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>dbj|AK103583.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133A18, full
           insert sequence
          Length = 2027

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 109 aagcagcacctacattggcaagctaaggtcgaactttctgggaacaaagttta 161
           |||||||||||| ||||| || |||||||| ||||| || || ||||| ||||
Sbjct: 908 aagcagcacctatattggaaaactaaggtcaaacttccttggcacaaaattta 960
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>dbj|AK074017.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073D08, full
           insert sequence
          Length = 2009

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 109 aagcagcacctacattggcaagctaaggtcgaactttctgggaacaaagttta 161
           |||||||||||| ||||| || |||||||| ||||| || || ||||| ||||
Sbjct: 920 aagcagcacctatattggaaaactaaggtcaaacttccttggcacaaaattta 972
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>dbj|AK069622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023F15, full
           insert sequence
          Length = 2023

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 109 aagcagcacctacattggcaagctaaggtcgaactttctgggaacaaagttta 161
           |||||||||||| ||||| || |||||||| ||||| || || ||||| ||||
Sbjct: 904 aagcagcacctatattggaaaactaaggtcaaacttccttggcacaaaattta 956
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>gb|AC102429.11| Mus musculus chromosome 18, clone RP24-93K11, complete sequence
          Length = 216331

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    gcagaaagcctacatacaca 67
             ||||||||||||||||||||
Sbjct: 63193 gcagaaagcctacatacaca 63174
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>emb|AL157893.16| Human DNA sequence from clone RP11-322M19 on chromosome 10 Contains the
              gene for a novel protein highly similar to KIAA2020, two
              novel genes and a CpG island, complete sequence
          Length = 162286

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     tttatcttgatatggctggt 97
              ||||||||||||||||||||
Sbjct: 146391 tttatcttgatatggctggt 146372
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>emb|AL135925.10| Human DNA sequence from clone RP11-182L21 on chromosome 10 Contains the
             5' end of a novel gene, two novel genes, a novel
             pseudogene and a CpG island, complete sequence
          Length = 60149

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    tttatcttgatatggctggt 97
             ||||||||||||||||||||
Sbjct: 16071 tttatcttgatatggctggt 16052
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>emb|AL606528.7| Mouse DNA sequence from clone RP23-45H23 on chromosome 13 Contains a
             ribosomal protein 7A (Rpl7a) pseudogene and a novel gene
             (2610307P16Rik), complete sequence
          Length = 148066

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    gcagaaagcctacatacaca 67
             ||||||||||||||||||||
Sbjct: 27720 gcagaaagcctacatacaca 27739
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>gb|AC068139.6| Homo sapiens chromosome 10 clone RP11-506M13, complete sequence
          Length = 178785

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     tttatcttgatatggctggt 97
              ||||||||||||||||||||
Sbjct: 166157 tttatcttgatatggctggt 166176
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>gb|AC008629.7| Homo sapiens chromosome 5 clone CTB-161M19, complete sequence
          Length = 151881

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   tatttcaaagggaagcagca 116
            ||||||||||||||||||||
Sbjct: 2764 tatttcaaagggaagcagca 2745
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>gb|AC010462.6| Homo sapiens chromosome 5 clone CTD-2276M2, complete sequence
          Length = 136506

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    tatttcaaagggaagcagca 116
             ||||||||||||||||||||
Sbjct: 16266 tatttcaaagggaagcagca 16285
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>gb|AC009452.21| Homo sapiens chromosome 17, clone RP11-4F22, complete sequence
          Length = 176069

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 247  cccaagagttcctgctggca 266
            ||||||||||||||||||||
Sbjct: 4153 cccaagagttcctgctggca 4172
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>emb|AL132715.3|CNS01DTE Human chromosome 14 DNA sequence BAC R-368E9 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 199335

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   agcacctacattggcaagct 132
             ||||||||||||||||||||
Sbjct: 28879 agcacctacattggcaagct 28860
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>dbj|AP003419.3| Homo sapiens genomic DNA, chromosome 11 clone:CTC-1337H24, complete
            sequence
          Length = 168565

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 70   ctacctaatttatcttgatatggc 93
            |||||||||||||||| |||||||
Sbjct: 2882 ctacctaatttatcttcatatggc 2905
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>gb|AC006263.1|AC006263 Homo sapiens chromosome 17, clone hCIT.187_K_10, complete sequence
          Length = 94742

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   cccaagagttcctgctggca 266
             ||||||||||||||||||||
Sbjct: 17601 cccaagagttcctgctggca 17582
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>dbj|AP002776.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-126P21, complete
            sequence
          Length = 31424

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 70   ctacctaatttatcttgatatggc 93
            |||||||||||||||| |||||||
Sbjct: 5263 ctacctaatttatcttcatatggc 5286
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>gb|AC132625.3| Mus musculus BAC clone RP23-101M7 from 1, complete sequence
          Length = 183691

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 49     cagaaagcctacatacacagacta 72
              ||||||||||||||||||| ||||
Sbjct: 175030 cagaaagcctacatacacacacta 175007
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>emb|AL132656.15|HSA119F19 Human DNA sequence from clone RP11-119F19 on chromosome 10, complete
            sequence
          Length = 153370

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 78   tttatcttgatatggctggt 97
            ||||||||||||||||||||
Sbjct: 9495 tttatcttgatatggctggt 9514


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,025,779
Number of Sequences: 3902068
Number of extensions: 2025779
Number of successful extensions: 32453
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32393
Number of HSP's gapped (non-prelim): 60
length of query: 271
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 249
effective length of database: 17,147,199,772
effective search space: 4269652743228
effective search space used: 4269652743228
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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