ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27i08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC083903.10| Homo sapiens BAC clone RP11-785G23 from UL, comp... 44 0.27
2gb|AC183275.3| Pan troglodytes BAC clone CH251-16D10 from chromo... 44 0.27
3gb|AC109815.5| Homo sapiens BAC clone CTD-2192H8 from 2, complet... 44 0.27
4gb|AC108938.3| Homo sapiens BAC clone RP11-701A10 from 2, comple... 44 0.27
5gb|AC115115.4| Homo sapiens BAC clone RP11-812M14 from 2, comple... 44 0.27
6gb|AC111200.7| Homo sapiens BAC clone RP11-1283H4 from 2, comple... 44 0.27
7gb|AC013271.4| Homo sapiens BAC clone RP11-385J6 from 2, complet... 44 0.27
8gb|AC114755.4| Homo sapiens BAC clone RP11-274P16 from 2, comple... 44 0.27
9gb|AC012487.12| Homo sapiens BAC clone RP11-85M14 from 2, comple... 44 0.27
10gb|AC093616.5| Homo sapiens BAC clone RP13-511M20 from 2, comple... 44 0.27
11emb|BX908778.5| Zebrafish DNA sequence from clone CH211-193E17 i... 42 1.1
12emb|CR387933.10| Zebrafish DNA sequence from clone DKEY-81L17 in... 42 1.1
13gb|AC151286.4| Mus musculus BAC clone RP23-368B8 from chromosome... 42 1.1
14gb|AC165087.4| Mus musculus BAC clone RP23-198K7 from chromosome... 42 1.1
15ref|XM_445929.1| Candida glabrata CBS138, CAGL0E05522g partial mRNA 40 4.3
16emb|AL121867.13|HSA405O21 Human DNA sequence from clone RP11-405... 40 4.3
17emb|CR380951.1| Candida glabrata strain CBS138 chromosome E comp... 40 4.3

>gb|AC083903.10| Homo sapiens BAC clone RP11-785G23 from UL, complete sequence
          Length = 174480

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 97    cttggtcttggacatcacagcc 118
             ||||||||||||||||||||||
Sbjct: 77995 cttggtcttggacatcacagcc 78016



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>gb|AC183275.3| Pan troglodytes BAC clone CH251-16D10 from chromosome 2, complete
             sequence
          Length = 180877

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 97    cttggtcttggacatcacagcc 118
             ||||||||||||||||||||||
Sbjct: 22432 cttggtcttggacatcacagcc 22411



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>gb|AC109815.5| Homo sapiens BAC clone CTD-2192H8 from 2, complete sequence
          Length = 165158

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 97   cttggtcttggacatcacagcc 118
            ||||||||||||||||||||||
Sbjct: 3637 cttggtcttggacatcacagcc 3616



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>gb|AC108938.3| Homo sapiens BAC clone RP11-701A10 from 2, complete sequence
          Length = 175222

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 97     cttggtcttggacatcacagcc 118
              ||||||||||||||||||||||
Sbjct: 132701 cttggtcttggacatcacagcc 132680



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>gb|AC115115.4| Homo sapiens BAC clone RP11-812M14 from 2, complete sequence
          Length = 124457

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 97     cttggtcttggacatcacagcc 118
              ||||||||||||||||||||||
Sbjct: 105543 cttggtcttggacatcacagcc 105522



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>gb|AC111200.7| Homo sapiens BAC clone RP11-1283H4 from 2, complete sequence
          Length = 186752

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 97     cttggtcttggacatcacagcc 118
              ||||||||||||||||||||||
Sbjct: 175747 cttggtcttggacatcacagcc 175768



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>gb|AC013271.4| Homo sapiens BAC clone RP11-385J6 from 2, complete sequence
          Length = 155702

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 97    cttggtcttggacatcacagcc 118
             ||||||||||||||||||||||
Sbjct: 71172 cttggtcttggacatcacagcc 71151



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>gb|AC114755.4| Homo sapiens BAC clone RP11-274P16 from 2, complete sequence
          Length = 195403

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 97     cttggtcttggacatcacagcc 118
              ||||||||||||||||||||||
Sbjct: 137080 cttggtcttggacatcacagcc 137059



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>gb|AC012487.12| Homo sapiens BAC clone RP11-85M14 from 2, complete sequence
          Length = 156602

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 97    cttggtcttggacatcacagcc 118
             ||||||||||||||||||||||
Sbjct: 57775 cttggtcttggacatcacagcc 57796



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>gb|AC093616.5| Homo sapiens BAC clone RP13-511M20 from 2, complete sequence
          Length = 192494

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 97     cttggtcttggacatcacagcc 118
              ||||||||||||||||||||||
Sbjct: 105063 cttggtcttggacatcacagcc 105042



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>emb|BX908778.5| Zebrafish DNA sequence from clone CH211-193E17 in linkage group 3,
             complete sequence
          Length = 138862

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 52    gctctgcttcttctctacttg 72
             |||||||||||||||||||||
Sbjct: 51908 gctctgcttcttctctacttg 51888



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>emb|CR387933.10| Zebrafish DNA sequence from clone DKEY-81L17 in linkage group 3, complete
              sequence
          Length = 182618

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 52     gctctgcttcttctctacttg 72
              |||||||||||||||||||||
Sbjct: 125109 gctctgcttcttctctacttg 125129



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>gb|AC151286.4| Mus musculus BAC clone RP23-368B8 from chromosome 17, complete sequence
          Length = 178835

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 167   tttagtggaaacataaggaaa 187
             |||||||||||||||||||||
Sbjct: 61500 tttagtggaaacataaggaaa 61480



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>gb|AC165087.4| Mus musculus BAC clone RP23-198K7 from chromosome 17, complete sequence
          Length = 211272

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 167   tttagtggaaacataaggaaa 187
             |||||||||||||||||||||
Sbjct: 41691 tttagtggaaacataaggaaa 41711



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>ref|XM_445929.1| Candida glabrata CBS138, CAGL0E05522g partial mRNA
          Length = 933

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 222 tgaatgaagaagctatgcac 241
           ||||||||||||||||||||
Sbjct: 824 tgaatgaagaagctatgcac 843



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>emb|AL121867.13|HSA405O21 Human DNA sequence from clone RP11-405O21 on chromosome Xq21.1-21.32
             Contains STSs and GSSs, complete sequence
          Length = 131238

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   cttttatatgattgcatagt 272
             ||||||||||||||||||||
Sbjct: 41864 cttttatatgattgcatagt 41845



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>emb|CR380951.1| Candida glabrata strain CBS138 chromosome E complete sequence
          Length = 687501

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    tgaatgaagaagctatgcac 241
              ||||||||||||||||||||
Sbjct: 545372 tgaatgaagaagctatgcac 545353


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,026,024
Number of Sequences: 3902068
Number of extensions: 4026024
Number of successful extensions: 98428
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98400
Number of HSP's gapped (non-prelim): 28
length of query: 324
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 302
effective length of database: 17,147,199,772
effective search space: 5178454331144
effective search space used: 5178454331144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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