>CYSZ_VIBCH (Q9KTD3) Protein cysZ homolog|
          Length = 250

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 24/72 (33%), Positives = 33/72 (45%)
 Frame = +1

Query: 85  WVRPEVYPLFAATGVAIGICAFSLLRNITGNPEVRVSKMGRAAGVLENHEEGRRYAEHGL 264
           W+   ++PL A T +A     FS L N   +P       G  A  +E H  G R  E G+
Sbjct: 67  WLSYVLWPLLALTILATFSYFFSTLANFIASP-----FNGLLAEKVEQHLSGERIGEEGV 121

Query: 265 RAYVQDKTPEIM 300
            A V+D  P I+
Sbjct: 122 WALVKD-VPRIL 132

>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 31.2 bits (69), Expect = 0.67
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 209  QQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSP 325
            ++E +  +++AG  PS+ S    R RPP   Q S   SP
Sbjct: 3468 EREAVERLQKAGPKPSSLSMAHSRVRPPMRSQASEEESP 3506

>BAG3_MOUSE (Q9JLV1) BAG family molecular chaperone regulator 3 (BCL-2-binding|
           athanogene-3) (BAG-3) (Bcl-2-binding protein Bis)
          Length = 577

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 179 QKSGSARWGGQQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPA 328
           Q+S S   GG  E  +T ++ G  P+TA+  T   +PP +     S SPA
Sbjct: 134 QRSQSPLRGGMTEAAQTDKQCGQMPATAT--TAAAQPPTAHGPERSQSPA 181

>MOT1_MOUSE (P53986) Monocarboxylate transporter 1 (MCT 1)|
          Length = 493

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 79  SKWVRPEVYPLFAATGVAIGIC 144
           +KW+RP +   FAA+ VA G+C
Sbjct: 315 TKWIRPRIQYFFAASVVANGVC 336

>MOT1_MERUN (O35439) Monocarboxylate transporter 1 (MCT 1) (Fragment)|
          Length = 76

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 79  SKWVRPEVYPLFAATGVAIGIC 144
           +KW+RP +   FAA+ VA G+C
Sbjct: 21  TKWIRPRIQYFFAASVVANGVC 42

>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 185  SGSARWGGQQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSP 325
            S S  +  ++E  + +++AG  PS+ S    R RPP   Q S   SP
Sbjct: 3456 SRSKGYERERETAQRLQKAGPKPSSLSMAHGRARPPMRSQASEEESP 3502

>MOT1_CRILO (Q03064) Monocarboxylate transporter 1 (MCT 1)|
          Length = 494

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 79  SKWVRPEVYPLFAATGVAIGIC 144
           +KW+RP +   FAA+ VA G+C
Sbjct: 315 TKWIRPRIQYFFAASVVANGVC 336

>CWC21_CRYNE (Q5KDV1) Pre-mRNA-splicing factor CWC21|
          Length = 205

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 181 EVRVSKMGRAAGVLENHEEGRRY 249
           E+ +S++ RA GV  NHEEGR +
Sbjct: 125 EIEMSRLQRALGVSVNHEEGRAF 147

>AFF3_HUMAN (P51826) AF4/FMR2 family member 3 (LAF-4 protein) (Lymphoid nuclear|
           protein related to AF4)
          Length = 1227

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 209 QQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSS 322
           QQ   RT  RA +  +   +P CRT  P S   S+SSS
Sbjct: 381 QQAAQRTALRALSDSAVVQQPNCRTSVPSSKGSSSSSS 418

>BPHF_SPHAR (O86013) 4-hydroxy-2-oxovalerate aldolase (EC 4.1.2.-)|
          Length = 262

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
 Frame = +1

Query: 115 AATGVAIGICAFSLLRNITGNPEVRVSKMGRAAGVLENHEE--------GRRYAEHGLRA 270
           AAT   +G  +F  L  +TG    R+   G+ AG+L   E         G R+  +G+ +
Sbjct: 179 AATEGLLGASSFDALFKLTGEALARIVATGKPAGILSRDERLVQQFLDGGARFIANGIDS 238

Query: 271 Y 273
           +
Sbjct: 239 F 239

>PDZK2_HUMAN (Q86UT5) PDZ domain-containing protein 2 (Intestinal and|
           kidney-enriched PDZ protein) (DLNB27 protein)
          Length = 571

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 291 GGLVLHVGSEAVLGVAPALLMVLKHSCCPPHLADP 187
           G  V     E VLG+ P L +     CCPPH  DP
Sbjct: 77  GHRVCQAHGEPVLGLCPLLPLF----CCPPHPPDP 107

>MOT1_RAT (P53987) Monocarboxylate transporter 1 (MCT 1)|
          Length = 494

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 79  SKWVRPEVYPLFAATGVAIGIC 144
           ++W+RP V   FAA+ VA G+C
Sbjct: 315 TRWIRPRVQYFFAASVVANGVC 336

>TSH_DROME (P22265) Protein teashirt|
          Length = 954

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +2

Query: 233 RRAGATPSTASEPTCRTRPPRSCQES----TSSSPA 328
           R +  TPS+A+ P  R  PPRS  ES    T  SPA
Sbjct: 839 RSSPKTPSSAASPQTRLLPPRSPAESQRSVTPKSPA 874

>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 209  QQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSP 325
            +++    +++AG+ PS+ S    R RPP   Q S   SP
Sbjct: 3478 ERDTAERLQKAGSKPSSLSMAHGRARPPMRSQASEEESP 3516

>NTHL1_HUMAN (P78549) Endonuclease III-like protein 1 (EC 4.2.99.18)|
          Length = 312

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 303 WHDLGGLVLHVGSEAVLGVAPALLMVLKHSCCP 205
           WH++ GL++  G +  L V P     L  + CP
Sbjct: 275 WHEINGLLVGFGQQTCLPVHPRCHACLNQALCP 307

>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            (hN2) [Contains: Notch 2 extracellular truncation; Notch
            2 intracellular domain]
          Length = 2471

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 206  GQQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPAR 331
            GQ +C    R+      TAS P C    PR C+   +SSP +
Sbjct: 1347 GQVKC----RKGEQCVHTASGPRCFCPSPRDCESGCASSPCQ 1384

>WDR50_MOUSE (Q5SSI6) WD-repeat protein 50|
          Length = 552

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 224 RTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPA 328
           R  RRAGATP   + P   + P ++ + S  + PA
Sbjct: 10  RRDRRAGATPGRKARPGSGSTPAKAARSSQRTQPA 44

>RS15_ACIAD (Q6FF13) 30S ribosomal protein S15|
          Length = 89

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 139 ICAFSLLRNITGNPEVRVSKMGRAAGVLENHEEGRRYAEHGLRAYVQ 279
           I  F+   N TG+PEV+V+ +      L+ H +  ++  H  R  ++
Sbjct: 12  IAKFARAENDTGSPEVQVALLTAQINDLQGHFKEHKHDHHSRRGLIR 58

>PAD1_YEAST (P33751) Phenylacrylic acid decarboxylase (EC 4.1.1.-) (PAD)|
          Length = 242

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 100 VYPLFAATGVAIGICAFSLLRNITGNPEVRVSKMGRAAGVLENHEEGRRYAEHGLRAY-V 276
           V  +  ATGVA+GI    +L+ ++    + +SK G A    E   E    A    + Y V
Sbjct: 58  VVAITGATGVALGIRLLQVLKELSVETHLVISKWGAATMKYETDWEPHDVAALATKTYSV 117

Query: 277 QDKTPEIMPG 306
           +D +  I  G
Sbjct: 118 RDVSACISSG 127

>HEM1_CHLVI (P28462) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)|
          Length = 424

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 248 TPSTASEPTCRTRPPRSCQE 307
           TP T+S PT R   PR+C+E
Sbjct: 204 TPGTSSSPTGRNPRPRACEE 223

>EGLN_PIG (P37176) Endoglin precursor|
          Length = 653

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 326 LVKNLLIPGMISGVLSCT*ALRP 258
           L++  ++P   +G+LSCT ALRP
Sbjct: 533 LLRGYVVPMPTAGILSCTVALRP 555

>CBLN2_HUMAN (Q8IUK8) Cerebellin-2 precursor|
          Length = 224

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 270 GSEAVLGVAPALLMVLKHSCCP 205
           G  + LGVA ALL++L  +CCP
Sbjct: 27  GCGSCLGVALALLLLLLPACCP 48

>ERFB_GIBZE (Q4I2M7) Palmitoyltransferase ERF2 (EC 2.3.1.-) (DHHC cysteine-rich|
           domain-containing protein ERF2) (Ras protein
           acyltransferase)
          Length = 679

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 179 QKSGSARWGGQQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSS 322
           QK  + R G  +    +   A A+PS+ + PT  T  PRS +   SSS
Sbjct: 131 QKLQAQRGGSHRPSTMSQMSAAASPSSPTSPTSPT-SPRSDEHGESSS 177

>RS15_PHOPR (Q6LUI9) 30S ribosomal protein S15|
          Length = 89

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 109 LFAATGVAIGICAFSLLRNITGNPEVRVSKMGRAAGVLENHEEGRRYAEHGLRAYVQ 279
           L A T  AI +  ++   N TG+PEV+V+ +      L+ H    ++  H  R  ++
Sbjct: 3   LNAETKAAI-VAEYAQCENDTGSPEVQVALLTAQINHLQGHFANHKHDHHSRRGLLR 58


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,383,836
Number of Sequences: 219361
Number of extensions: 550961
Number of successful extensions: 2296
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2294
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)