ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27h23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK073280.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 1e-08
2ref|XM_661880.1| Cryptosporidium hominis TU502 hypothetical prot... 44 0.57
3emb|AL512601.18| Human DNA sequence from clone RP11-500B3 on chr... 44 0.57
4gb|AC022746.10| Homo sapiens chromosome 10, clone RP11-567F2, co... 44 0.57
5ref|XM_628174.1| Cryptosporidium parvum Iowa II transcription fa... 44 0.57
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.57
7dbj|AP005455.5| Oryza sativa (japonica cultivar-group) genomic D... 44 0.57
8gb|AC166148.5| Cavia porcellus, clone Cavia porcellus-24948757J7... 44 0.57
9gb|AF482501.1| Closterium acerosum photosystem II P680 chlorophy... 42 2.3
10gb|AC110214.7| Mus musculus chromosome 8, clone RP24-485L5, comp... 42 2.3
11gb|AC164980.3| Mus musculus BAC clone RP23-184C3 from chromosome... 42 2.3
12gb|AC147021.3| Pan troglodytes BAC clone RP43-85B14 from 7, comp... 42 2.3
13gb|AC130719.3| Mus musculus BAC clone RP24-107M5 from chromosome... 42 2.3
14gb|AC142453.3| Mus musculus BAC clone RP23-398A2 from chromosome... 42 2.3
15gb|AC124545.4| Mus musculus BAC clone RP23-272D9 from 7, complet... 42 2.3
16gb|AC006319.3| Homo sapiens PAC clone RP5-837C9 from 7, complete... 42 2.3
17gb|AC110554.10| Mus musculus chromosome 8, clone RP23-249H16, co... 42 2.3
18emb|AL035414.30|HS667H12 Human DNA sequence from clone RP4-667H1... 42 2.3
19gb|AC116901.7| Homo sapiens chromosome 11, clone RP11-280E5, com... 42 2.3
20gb|AC025787.9| Homo sapiens chromosome 11, clone RP11-227P3, com... 42 2.3
21gb|AC161454.3| Mus musculus BAC clone RP23-332F10 from chromosom... 42 2.3
22dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
23dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
24emb|BX649261.3| Zebrafish DNA sequence from clone DKEY-215A8 in ... 42 2.3
25gb|AC139241.4| Mus musculus BAC clone RP24-79L4 from 3, complete... 42 2.3
26gb|AC173484.2| Mus musculus BAC clone RP23-250N1 from chromosome... 42 2.3
27gb|AC173478.1| Mus musculus BAC clone RP24-81N9 from chromosome ... 42 2.3
28gb|AC172366.1| Mus musculus BAC clone RP24-499J10 from chromosom... 42 2.3
29gb|AC151753.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 8.9
30ref|XM_481576.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.9
31ref|NM_189719.1| Oryza sativa (japonica cultivar-group), predic... 40 8.9
32gb|AC127592.6| Mus musculus BAC clone RP23-330A5 from chromosome... 40 8.9
33gb|AF407200.1| Uncultured bacterium clone GIF9 16S ribosomal RNA... 40 8.9
34gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.9
35gb|AY193201.1| Uncultured candidate division SR1 bacterium clone... 40 8.9
36gb|AY193174.1| Uncultured candidate division SR1 bacterium clone... 40 8.9
37gb|AY193172.1| Uncultured candidate division SR1 bacterium clone... 40 8.9
38gb|AC124179.4| Mus musculus chromosome 12 clone RP23-198B21, com... 40 8.9
39gb|AC102503.8| Mus musculus chromosome 16, clone RP24-383M8, com... 40 8.9
40ref|XM_823075.1| Trypanosoma brucei TREU927 DNA repair protein (... 40 8.9
41emb|CT025542.5| Mouse DNA sequence from clone RP24-270A18 on chr... 40 8.9
42gb|AC120052.2| Homo sapiens chromosome 8, clone CTD-2232O19, com... 40 8.9
43gb|AC123940.4| Mus musculus BAC clone RP23-440M11 from chromosom... 40 8.9
44emb|BX510907.15| Zebrafish DNA sequence from clone CH211-234B6 i... 40 8.9
45gb|AC092904.7| Homo sapiens 3 BAC RP11-675I21 (Roswell Park Canc... 40 8.9
46gb|AE011856.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 8.9
47gb|AC025039.7| Homo sapiens chromosome 10 clone RP11-457M15, com... 40 8.9
48gb|AC018508.9| Homo sapiens chromosome 10 clone RP11-123L21, com... 40 8.9
49gb|AC022716.13| Homo sapiens chromosome 8, clone RP11-135I5, com... 40 8.9
50gb|U41022.1| Caenorhabditis elegans cosmid K08B5, complete sequence 40 8.9
51gb|AC159640.2| Mus musculus BAC clone RP24-70O22 from chromosome... 40 8.9
52dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
53dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
54gb|AC055725.22| Homo sapiens 3 BAC RP11-470E12 (Roswell Park Can... 40 8.9
55dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
56gb|AC139713.1| Homo sapiens BAC clone RP11-481K16 from 4, comple... 40 8.9
57gb|AY816492.1| Uncultured bacterium clone Ad-H1-95 16S ribosomal... 40 8.9
58dbj|AP003863.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
59gb|AC007375.6|AC007375 Homo sapiens chromosome 14 clone RP11-463... 40 8.9
60dbj|AP004561.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
61dbj|AP005485.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
62dbj|AK101379.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.9
63gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 8.9
64emb|AM167972.1| Uncultured candidate division OP11 bacterium par... 40 8.9
65emb|AL117187.7|CNS01DRD Human chromosome 14 DNA sequence BAC R-7... 40 8.9
66gb|U41020.1| Caenorhabditis elegans cosmid T27B1, complete sequence 40 8.9
67emb|AL356017.3|CNS05TD7 Human chromosome 14 DNA sequence BAC C-2... 40 8.9
68emb|AL669982.10| Mouse DNA sequence from clone RP23-297N24 on ch... 40 8.9
69emb|AL627253.9| Mouse DNA sequence from clone RP23-53P10 on chro... 40 8.9 
>dbj|AK073280.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025F17, full
           insert sequence
          Length = 1819

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                       
Query: 551 ttcctcttctgttgaggtggatattcctctaatgcgttttgtgaaaggaaagggtggatc 610
           ||||||||||||| |||| |||  |||||| ||||| |||||||||||||| |||||| |
Sbjct: 457 ttcctcttctgttcaggtagatgctcctctgatgcgctttgtgaaaggaaaaggtggaac 516

                          
Query: 611 tgtgcagaagcagat 625
             |||||||||||||
Sbjct: 517 catgcagaagcagat 531



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 265 cggcgaaacacaggaaaacaaattcacctctgcagagatggaggccagtctcaacacaag 324
           |||| ||||||| ||||| ||| ||  || ||||||||||||||||| |||| ||| |||
Sbjct: 186 cggcaaaacacaagaaaagaaagtctgctgtgcagagatggaggccaatctccacagaag 245

            
Query: 325 c 325
           |
Sbjct: 246 c 246
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>ref|XM_661880.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.10407)
           partial mRNA
          Length = 1107

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 539 cagaggaaaatattcctcttct 560
           ||||||||||||||||||||||
Sbjct: 76  cagaggaaaatattcctcttct 55
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>emb|AL512601.18| Human DNA sequence from clone RP11-500B3 on chromosome 9 Contains the 5'
              end of a novel gene, complete sequence
          Length = 165517

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 514    ttatagaaaacactatggaggt 535
              ||||||||||||||||||||||
Sbjct: 120855 ttatagaaaacactatggaggt 120834
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>gb|AC022746.10| Homo sapiens chromosome 10, clone RP11-567F2, complete sequence
          Length = 168998

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 514   ttatagaaaacactatggaggt 535
             ||||||||||||||||||||||
Sbjct: 87087 ttatagaaaacactatggaggt 87066
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>ref|XM_628174.1| Cryptosporidium parvum Iowa II transcription factor TAF7p/TAFII55
           (cgd1_3620), partial mRNA
          Length = 1107

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 539 cagaggaaaatattcctcttct 560
           ||||||||||||||||||||||
Sbjct: 76  cagaggaaaatattcctcttct 55
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 145      cccgaaggcccccgctcgtcgccggc 170
                |||||||||| |||||||||||||||
Sbjct: 26893992 cccgaaggccgccgctcgtcgccggc 26893967



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 145      cccgaaggcccccgctcgtcgccggctc 172
                |||| ||||| |||||||||||||||||
Sbjct: 21013708 cccggaggccgccgctcgtcgccggctc 21013681
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>dbj|AP005455.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0503D09
          Length = 144443

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 145   cccgaaggcccccgctcgtcgccggc 170
             |||||||||| |||||||||||||||
Sbjct: 42583 cccgaaggccgccgctcgtcgccggc 42558
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>gb|AC166148.5| Cavia porcellus, clone Cavia porcellus-24948757J7, complete sequence
          Length = 40129

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 425  aacaactaatgctggaattgaa 446
            ||||||||||||||||||||||
Sbjct: 8806 aacaactaatgctggaattgaa 8827
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>gb|AF482501.1| Closterium acerosum photosystem II P680 chlorophyll A apoprotein
            (psbB) gene, partial cds; photosystem II PsbT (psbT),
            photosystem II PsbN (psbN), photosystem II PsbH (psbH),
            and cytochrome b6 (petB) genes, complete cds; and
            cytochrome b6-f complex subunit 4 (petD) gene, partial
            cds; chloroplast genes for chloroplast products
          Length = 3442

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 465  ttctcgtcagaaagtaattcc 485
            |||||||||||||||||||||
Sbjct: 1435 ttctcgtcagaaagtaattcc 1415
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>gb|AC110214.7| Mus musculus chromosome 8, clone RP24-485L5, complete sequence
          Length = 213387

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 285    aattcacctctgcagagatgg 305
              |||||||||||||||||||||
Sbjct: 151324 aattcacctctgcagagatgg 151304
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>gb|AC164980.3| Mus musculus BAC clone RP23-184C3 from chromosome 7, complete sequence
          Length = 218755

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 512    agttatagaaaacactatgga 532
              |||||||||||||||||||||
Sbjct: 216327 agttatagaaaacactatgga 216347
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>gb|AC147021.3| Pan troglodytes BAC clone RP43-85B14 from 7, complete sequence
          Length = 159960

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 515  tatagaaaacactatggaggt 535
            |||||||||||||||||||||
Sbjct: 9295 tatagaaaacactatggaggt 9275
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>gb|AC130719.3| Mus musculus BAC clone RP24-107M5 from chromosome 7, complete sequence
          Length = 143584

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 512   agttatagaaaacactatgga 532
             |||||||||||||||||||||
Sbjct: 29111 agttatagaaaacactatgga 29131
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>gb|AC142453.3| Mus musculus BAC clone RP23-398A2 from chromosome 7, complete sequence
          Length = 188249

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 512   agttatagaaaacactatgga 532
             |||||||||||||||||||||
Sbjct: 40876 agttatagaaaacactatgga 40896
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>gb|AC124545.4| Mus musculus BAC clone RP23-272D9 from 7, complete sequence
          Length = 169442

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 512   agttatagaaaacactatgga 532
             |||||||||||||||||||||
Sbjct: 69825 agttatagaaaacactatgga 69805
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>gb|AC006319.3| Homo sapiens PAC clone RP5-837C9 from 7, complete sequence
          Length = 85821

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 515   tatagaaaacactatggaggt 535
             |||||||||||||||||||||
Sbjct: 25589 tatagaaaacactatggaggt 25609
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>gb|AC110554.10| Mus musculus chromosome 8, clone RP23-249H16, complete sequence
          Length = 170361

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 285    aattcacctctgcagagatgg 305
              |||||||||||||||||||||
Sbjct: 123880 aattcacctctgcagagatgg 123900
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>emb|AL035414.30|HS667H12 Human DNA sequence from clone RP4-667H12 on chromosome 1q32.1-41 Contains
              a novel gene, the SERTAD4 gene for SERTA domain containing
              protein 4, a processed pseudogene similar to putative tumor
              suppressor ST13, a processed pseudogene similar to
              ribonuclease H1 (RNASEH1), the 5' end of the gene for
              melanoma antigen recognized by T cells 2 (MART2) protein
              and a CpG island, complete sequence
          Length = 131239

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 515    tatagaaaacactatggaggt 535
              |||||||||||||||||||||
Sbjct: 100247 tatagaaaacactatggaggt 100227
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>gb|AC116901.7| Homo sapiens chromosome 11, clone RP11-280E5, complete sequence
          Length = 164179

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 412    tggtgtttgatgaaacaacta 432
              |||||||||||||||||||||
Sbjct: 118247 tggtgtttgatgaaacaacta 118227
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>gb|AC025787.9| Homo sapiens chromosome 11, clone RP11-227P3, complete sequence
          Length = 168793

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 412   tggtgtttgatgaaacaacta 432
             |||||||||||||||||||||
Sbjct: 49004 tggtgtttgatgaaacaacta 48984
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>gb|AC161454.3| Mus musculus BAC clone RP23-332F10 from chromosome 3, complete sequence
          Length = 228486

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 317    aacacaagcaatcccccaaaaagat 341
              ||||||| |||||||||||||||||
Sbjct: 185159 aacacaaacaatcccccaaaaagat 185135
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                           
Query: 265     cggcgaaacacaggaaaacaaattcacctctgcagagatggaggccagtctcaacacaag 324
               |||| ||||||| ||||| ||| ||  || ||||||||||||||||| |||| ||| |||
Sbjct: 7287929 cggcaaaacacaagaaaagaaagtctgctgtgcagagatggaggccaatctccacagaag 7287988

                
Query: 325     c 325
               |
Sbjct: 7287989 c 7287989



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 145      cccgaaggcccccgctcgtcgccggctc 172
                |||| ||||| |||||||||||||||||
Sbjct: 41371150 cccggaggccgccgctcgtcgccggctc 41371177
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>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0431F01
          Length = 143209

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                         
Query: 265   cggcgaaacacaggaaaacaaattcacctctgcagagatggaggccagtctcaacacaag 324
             |||| ||||||| ||||| ||| ||  || ||||||||||||||||| |||| ||| |||
Sbjct: 89359 cggcaaaacacaagaaaagaaagtctgctgtgcagagatggaggccaatctccacagaag 89418

              
Query: 325   c 325
             |
Sbjct: 89419 c 89419
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>emb|BX649261.3| Zebrafish DNA sequence from clone DKEY-215A8 in linkage group 4, complete
              sequence
          Length = 147890

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 292    ctctgcagagatggaggccag 312
              |||||||||||||||||||||
Sbjct: 115932 ctctgcagagatggaggccag 115912
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>gb|AC139241.4| Mus musculus BAC clone RP24-79L4 from 3, complete sequence
          Length = 200361

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 317  aacacaagcaatcccccaaaaagat 341
            ||||||| |||||||||||||||||
Sbjct: 5014 aacacaaacaatcccccaaaaagat 4990
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>gb|AC173484.2| Mus musculus BAC clone RP23-250N1 from chromosome 7, complete sequence
          Length = 207692

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 512    agttatagaaaacactatgga 532
              |||||||||||||||||||||
Sbjct: 150919 agttatagaaaacactatgga 150899
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>gb|AC173478.1| Mus musculus BAC clone RP24-81N9 from chromosome 7, complete sequence
          Length = 208133

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 512    agttatagaaaacactatgga 532
              |||||||||||||||||||||
Sbjct: 200138 agttatagaaaacactatgga 200118
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>gb|AC172366.1| Mus musculus BAC clone RP24-499J10 from chromosome 7, complete sequence
          Length = 171297

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 512   agttatagaaaacactatgga 532
             |||||||||||||||||||||
Sbjct: 82543 agttatagaaaacactatgga 82563
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>gb|AC151753.1| Ornithorhynchus anatinus chromosome UNK clone OABb-467P24, complete
              sequence
          Length = 143764

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 627    gaacaggagactggagttaagctc 650
              |||||||||||||||||| |||||
Sbjct: 141389 gaacaggagactggagttcagctc 141366
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>ref|XM_481576.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 978

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 365 cggaaggaagcaaatggcgg 384
           ||||||||||||||||||||
Sbjct: 742 cggaaggaagcaaatggcgg 761
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>ref|NM_189719.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1146

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 145 cccgaaggcccccgctcgtcgccggctc 172
           |||| ||||| |||||||||||||||||
Sbjct: 622 cccggaggccgccgctcgtcgccggctc 595
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>gb|AC127592.6| Mus musculus BAC clone RP23-330A5 from chromosome 16, complete sequence
          Length = 185326

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    taatttgtcctcctctgtca 234
              ||||||||||||||||||||
Sbjct: 134777 taatttgtcctcctctgtca 134758
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>gb|AF407200.1| Uncultured bacterium clone GIF9 16S ribosomal RNA gene, partial
            sequence
          Length = 1486

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 78   cgtcatcctccccttcctcc 97
            ||||||||||||||||||||
Sbjct: 1129 cgtcatcctccccttcctcc 1110
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>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099O15,
              complete sequence
          Length = 137357

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 145    cccgaaggcccccgctcgtcgccggctc 172
              |||| ||||| |||||||||||||||||
Sbjct: 106814 cccggaggccgccgctcgtcgccggctc 106841
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>gb|AY193201.1| Uncultured candidate division SR1 bacterium clone SRB52 16S ribosomal
            RNA gene, partial sequence
          Length = 1324

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 78   cgtcatcctccccttcctcc 97
            ||||||||||||||||||||
Sbjct: 1136 cgtcatcctccccttcctcc 1117
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>gb|AY193174.1| Uncultured candidate division SR1 bacterium clone SRB1 16S ribosomal
            RNA gene, partial sequence
          Length = 1323

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 78   cgtcatcctccccttcctcc 97
            ||||||||||||||||||||
Sbjct: 1135 cgtcatcctccccttcctcc 1116
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>gb|AY193172.1| Uncultured candidate division SR1 bacterium clone SRB29 16S ribosomal
            RNA gene, partial sequence
          Length = 1335

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 78   cgtcatcctccccttcctcc 97
            ||||||||||||||||||||
Sbjct: 1146 cgtcatcctccccttcctcc 1127
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>gb|AC124179.4| Mus musculus chromosome 12 clone RP23-198B21, complete sequence
          Length = 192472

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 578    tctaatgcgttttgtgaaaggaaa 601
              |||||||| |||||||||||||||
Sbjct: 191697 tctaatgccttttgtgaaaggaaa 191720
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>gb|AC102503.8| Mus musculus chromosome 16, clone RP24-383M8, complete sequence
          Length = 220467

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    taatttgtcctcctctgtca 234
              ||||||||||||||||||||
Sbjct: 167845 taatttgtcctcctctgtca 167864
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>ref|XM_823075.1| Trypanosoma brucei TREU927 DNA repair protein (Tb11.03.0400) partial
            mRNA
          Length = 2955

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   atcctccccttcctccgcgt 101
            ||||||||||||||||||||
Sbjct: 1008 atcctccccttcctccgcgt 989
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>emb|CT025542.5| Mouse DNA sequence from clone RP24-270A18 on chromosome 12, complete
              sequence
          Length = 181654

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 524    cactatggaggtaatcagag 543
              ||||||||||||||||||||
Sbjct: 153864 cactatggaggtaatcagag 153845
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>gb|AC120052.2| Homo sapiens chromosome 8, clone CTD-2232O19, complete sequence
          Length = 108119

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   atagaaaacactatggaggt 535
             ||||||||||||||||||||
Sbjct: 37451 atagaaaacactatggaggt 37432
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>gb|AC123940.4| Mus musculus BAC clone RP23-440M11 from chromosome 12, complete
             sequence
          Length = 197665

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 578   tctaatgcgttttgtgaaaggaaa 601
             |||||||| |||||||||||||||
Sbjct: 53957 tctaatgccttttgtgaaaggaaa 53980
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>emb|BX510907.15| Zebrafish DNA sequence from clone CH211-234B6 in linkage group 5,
              complete sequence
          Length = 154591

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 409    atttggtgtttgatgaaaca 428
              ||||||||||||||||||||
Sbjct: 102548 atttggtgtttgatgaaaca 102567
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>gb|AC092904.7| Homo sapiens 3 BAC RP11-675I21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 129641

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   aggaaaacaaattcacctct 295
             ||||||||||||||||||||
Sbjct: 83083 aggaaaacaaattcacctct 83102
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>gb|AE011856.1| Xanthomonas axonopodis pv. citri str. 306,  section 234 of 469 of the
            complete genome
          Length = 9162

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 135  agccggctcgcccgaaggcccccgctcg 162
            ||||||| ||||||||||| ||||||||
Sbjct: 5148 agccggcacgcccgaaggcacccgctcg 5175
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>gb|AC025039.7| Homo sapiens chromosome 10 clone RP11-457M15, complete sequence
          Length = 172790

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 393   attagtgatagtgagaattt 412
             ||||||||||||||||||||
Sbjct: 31496 attagtgatagtgagaattt 31515
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>gb|AC018508.9| Homo sapiens chromosome 10 clone RP11-123L21, complete sequence
          Length = 149901

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   attagtgatagtgagaattt 412
             ||||||||||||||||||||
Sbjct: 44534 attagtgatagtgagaattt 44515
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>gb|AC022716.13| Homo sapiens chromosome 8, clone RP11-135I5, complete sequence
          Length = 163495

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 516    atagaaaacactatggaggt 535
              ||||||||||||||||||||
Sbjct: 142586 atagaaaacactatggaggt 142605
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>gb|U41022.1| Caenorhabditis elegans cosmid K08B5, complete sequence
          Length = 35728

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 516  atagaaaacactatggaggt 535
            ||||||||||||||||||||
Sbjct: 2793 atagaaaacactatggaggt 2774
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>gb|AC159640.2| Mus musculus BAC clone RP24-70O22 from chromosome 12, complete sequence
          Length = 214955

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 524   cactatggaggtaatcagag 543
             ||||||||||||||||||||
Sbjct: 11767 cactatggaggtaatcagag 11748
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 365      cggaaggaagcaaatggcgg 384
                ||||||||||||||||||||
Sbjct: 13916785 cggaaggaagcaaatggcgg 13916804
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 145      cccgaaggcccccgctcgtcgccggctc 172
                |||| ||||| |||||||||||||||||
Sbjct: 23716809 cccggaggccgccgctcgtcgccggctc 23716836
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>gb|AC055725.22| Homo sapiens 3 BAC RP11-470E12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 169089

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    acacaggaaaacaaattcac 291
              ||||||||||||||||||||
Sbjct: 141489 acacaggaaaacaaattcac 141470
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>dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0432C03
          Length = 164394

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 145   cccgaaggcccccgctcgtcgccggctc 172
             |||| ||||| |||||||||||||||||
Sbjct: 62643 cccggaggccgccgctcgtcgccggctc 62670
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>gb|AC139713.1| Homo sapiens BAC clone RP11-481K16 from 4, complete sequence
          Length = 196020

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 551    ttcctcttctgttgaggtgg 570
              ||||||||||||||||||||
Sbjct: 104147 ttcctcttctgttgaggtgg 104128
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>gb|AY816492.1| Uncultured bacterium clone Ad-H1-95 16S ribosomal RNA gene, partial
           sequence
          Length = 585

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 78  cgtcatcctccccttcctccgcgt 101
           |||||||||| |||||||||||||
Sbjct: 273 cgtcatcctcgccttcctccgcgt 250
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>dbj|AP003863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1058_A12
          Length = 152269

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 145   cccgaaggcccccgctcgtcgccggctc 172
             |||| ||||| |||||||||||||||||
Sbjct: 57007 cccggaggccgccgctcgtcgccggctc 56980
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>gb|AC007375.6|AC007375 Homo sapiens chromosome 14 clone RP11-463C8 containing POMT2 gene,
             partial cds; and unknown genes, complete sequence
          Length = 180331

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 273   cacaggaaaacaaattcacctctg 296
             ||||||||||||||||||| ||||
Sbjct: 59055 cacaggaaaacaaattcacttctg 59078
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>dbj|AP004561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0465H09
          Length = 148590

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 365    cggaaggaagcaaatggcgg 384
              ||||||||||||||||||||
Sbjct: 124504 cggaaggaagcaaatggcgg 124523
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>dbj|AP005485.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1136_D12
          Length = 105521

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   cggaaggaagcaaatggcgg 384
             ||||||||||||||||||||
Sbjct: 61180 cggaaggaagcaaatggcgg 61199
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>dbj|AK101379.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036D04, full
            insert sequence
          Length = 2772

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 365  cggaaggaagcaaatggcgg 384
            ||||||||||||||||||||
Sbjct: 2233 cggaaggaagcaaatggcgg 2252
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 616     agaagcagatcgaacaggag 635
               ||||||||||||||||||||
Sbjct: 1481004 agaagcagatcgaacaggag 1480985
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>emb|AM167972.1| Uncultured candidate division OP11 bacterium partial 16S rRNA gene,
            clone BB35
          Length = 1425

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 78   cgtcatcctccccttcctccgcgt 101
            |||||||||| |||||||||||||
Sbjct: 1109 cgtcatcctcgccttcctccgcgt 1086
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>emb|AL117187.7|CNS01DRD Human chromosome 14 DNA sequence BAC R-725G5 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 195835

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     cctctgtttccccaaagtcc 43
              ||||||||||||||||||||
Sbjct: 153658 cctctgtttccccaaagtcc 153639
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>gb|U41020.1| Caenorhabditis elegans cosmid T27B1, complete sequence
          Length = 27763

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   atagaaaacactatggaggt 535
             ||||||||||||||||||||
Sbjct: 27556 atagaaaacactatggaggt 27537
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>emb|AL356017.3|CNS05TD7 Human chromosome 14 DNA sequence BAC C-2240H23 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 149635

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     cctctgtttccccaaagtcc 43
              ||||||||||||||||||||
Sbjct: 118173 cctctgtttccccaaagtcc 118192
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>emb|AL669982.10| Mouse DNA sequence from clone RP23-297N24 on chromosome 4, complete
           sequence
          Length = 240125

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 cacctctgcagagatggagg 308
           ||||||||||||||||||||
Sbjct: 213 cacctctgcagagatggagg 194
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>emb|AL627253.9| Mouse DNA sequence from clone RP23-53P10 on chromosome 4, complete
             sequence
          Length = 20092

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   cacctctgcagagatggagg 308
             ||||||||||||||||||||
Sbjct: 18305 cacctctgcagagatggagg 18286


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,826,334
Number of Sequences: 3902068
Number of extensions: 5826334
Number of successful extensions: 119480
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119039
Number of HSP's gapped (non-prelim): 441
length of query: 655
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 632
effective length of database: 17,143,297,704
effective search space: 10834564148928
effective search space used: 10834564148928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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