ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27h17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473881.1| Oryza sativa (japonica cultivar-group), predic... 280 5e-72
2emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4,... 190 4e-45
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 190 4e-45
4gb|AY103926.1| Zea mays PCO137834 mRNA sequence 143 8e-31
5dbj|AK058602.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 1e-08
6gb|AY112235.1| Zea mays CL7269_1 mRNA sequence 44 0.56
7gb|AC097268.10| Pan troglodytes BAC RP43-43O8 (Roswell Park Can... 42 2.2
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
9gb|AF265216.1|AF265216 Gallus gallus multidrug resistance protei... 42 2.2
10dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
11ref|XM_575436.1| PREDICTED: Rattus norvegicus similar to RIKEN c... 42 2.2
12dbj|AK105972.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
13dbj|AK068247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
14gb|AC153795.1| Mus musculus BAC RP23-276L17 (Roswell Park Cance... 40 8.7
15gb|AC123732.9| Mus musculus chromosome 1, clone RP23-459I8, comp... 40 8.7
16gb|AC132350.4| Mus musculus BAC clone RP24-95A6 from chromosome ... 40 8.7
17gb|AC170163.1| Homo sapiens chromosome 1 clone WI2-3014I21, comp... 40 8.7
18gb|AC159247.2| Mus musculus BAC clone RP24-249C9 from chromosome... 40 8.7
19ref|XM_415419.1| PREDICTED: Gallus gallus similar to KIAA0310 pr... 40 8.7
20gb|AC122200.4| Mus musculus BAC clone RP23-64D23 from 6, complet... 40 8.7
21gb|AC104099.5| Mus musculus BAC clone RP24-372J8 from 3, complet... 40 8.7
22gb|AC145966.2| Pan troglodytes BAC clone RP43-17M9 from 7, compl... 40 8.7
23gb|AC073341.10| Homo sapiens BAC clone RP11-549I23 from 7, compl... 40 8.7
24emb|AL671862.6| Human DNA sequence from clone RP11-810H18 on chr... 40 8.7
25emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome 40 8.7
26emb|BX571870.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 8.7
27gb|AF529123.1| Uncultured epsilon proteobacterium clone FTLM3 16... 40 8.7
28gb|AF529118.1| Uncultured epsilon proteobacterium clone FTLM173 ... 40 8.7
29gb|DQ408986.1| Uncultured bacterium clone s101 16S ribosomal RNA... 40 8.7
30dbj|AB232924.1| Oryzias latipes hox gene cluster, complete cds, ... 40 8.7
31dbj|AB240470.1| Uncultured bacterium gene for 16S rRNA, partial ... 40 8.7
32dbj|AB240464.1| Uncultured bacterium gene for 16S rRNA, partial ... 40 8.7
33gb|AC106768.3| Homo sapiens chromosome 5 clone RP11-270H9, compl... 40 8.7
34gb|AC106744.2| Homo sapiens chromosome 5 clone RP11-124N3, compl... 40 8.7
35gb|AC024248.7| Homo sapiens BAC clone RP11-659O3 from 4, complet... 40 8.7
36ref|XM_686936.1| PREDICTED: Danio rerio im:7148063 (im:7148063),... 40 8.7
37gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 8.7
38gb|AY064402.1| Leishmania major SRP54-like protein gene, partial... 40 8.7
39gb|BC056714.1| Danio rerio im:7148063, mRNA (cDNA clone IMAGE:67... 40 8.7
40gb|DQ336051.1| Uncultured bacterium clone RGJ27 16S ribosomal RN... 40 8.7
41gb|AC006552.7|AC006552 Homo sapiens chromosome 4 clone C0084L10 ... 40 8.7
42gb|DQ325489.1| Uncultured bacterium isolate SSCP band Eu-b24 16S... 40 8.7
43dbj|AB080644.1| Sulfuricurvum kujiense gene for 16S rRNA, partia... 40 8.7
44gb|AF071892.1|AF071892 Prunus armeniaca omega-6 fatty acid desat... 40 8.7
45dbj|AB030609.1| Uncultured epsilon proteobacterium 1061 gene for... 40 8.7 
>ref|XM_473881.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 5496

 Score =  280 bits (141), Expect = 5e-72
 Identities = 243/277 (87%)
 Strand = Plus / Plus

                                                                        
Query: 11   cttacaagcaagatgcaggagcatgcaaacttagtccacgaaaaagatcagttggagcaa 70
            ||||||| ||| ||||| |||||||||||||| ||||| |||||||||  |||||| |||
Sbjct: 4720 cttacaaccaaaatgcaagagcatgcaaacttggtccatgaaaaagatgcgttggaacaa 4779

                                                                        
Query: 71   caattgctggaagtcaggaaggaactggaggctgcttaccgaaccatagctaatcaggaa 130
            ||||| |||||||| |||||||||||  | | ||||||||  |||||||| |||||||||
Sbjct: 4780 caattactggaagttaggaaggaactaaatgatgcttaccataccatagcaaatcaggaa 4839

                                                                        
Query: 131  gagcaagcttcagtgagggagataaagtgggatgcatataagacgtattcagcggatcaa 190
            ||||||| ||||||||||||||||||||||||||||||||||| ||  |||| |||||||
Sbjct: 4840 gagcaagtttcagtgagggagataaagtgggatgcatataagaagttctcagaggatcaa 4899

                                                                        
Query: 191  ctagaagttgcacagaaacatgctgcagagctggaagtacaagtatcagctcttgatcaa 250
            || |||| ||  ||| | |||| ||||||||||||||||||||||||| ||||| | |||
Sbjct: 4900 cttgaagctgagcagcagcatgttgcagagctggaagtacaagtatcatctcttaaacaa 4959

                                                 
Query: 251  cagctgcaagaagctgagatccattacaagaacaagg 287
            |||||||||||| ||||||||||||||||| ||||||
Sbjct: 4960 cagctgcaagaaactgagatccattacaagcacaagg 4996



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 101/123 (82%)
 Strand = Plus / Plus

                                                                        
Query: 284  aaggttgcagaggagagtgagaaactcgctcttgtcaatacgcagctcaacaagctgacc 343
            |||||| |||| ||||| |||||||| ||||| || || ||| |  ||| |||| |||| 
Sbjct: 5152 aaggttacagaagagagggagaaacttgctctcgttaacacggaagtcagcaagttgaca 5211

                                                                        
Query: 344  caaaatgtgagcaagagtgctgaaatggagaagaaggtacaggaccttgagcagaagttg 403
            || ||  | ||||||||||||||||||||||||||| || |  ||||||||||||| |||
Sbjct: 5212 cagaagcttagcaagagtgctgaaatggagaagaagatagaacaccttgagcagaaattg 5271

               
Query: 404  cag 406
            |||
Sbjct: 5272 cag 5274



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                        
Query: 551  cagcaacaactgcgggaaccctctggtatcatggccttcaagttcatcttgggcgtcgct 610
            |||||| ||||||| || || ||||||||||||||||| ||||||||| |||| ||||| 
Sbjct: 5392 cagcaagaactgcgagagccttctggtatcatggcctttaagttcatcctgggagtcgcg 5451

                 
Query: 611  ctgct 615
            |||||
Sbjct: 5452 ctgct 5456
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>emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008M17,
             complete sequence
          Length = 133279

 Score =  190 bits (96), Expect = 4e-45
 Identities = 147/164 (89%)
 Strand = Plus / Plus

                                                                         
Query: 125   caggaagagcaagcttcagtgagggagataaagtgggatgcatataagacgtattcagcg 184
             ||||||||||||| ||||||||||||||||||||||||||||||||||| ||  |||| |
Sbjct: 49992 caggaagagcaagtttcagtgagggagataaagtgggatgcatataagaagttctcagag 50051

                                                                         
Query: 185   gatcaactagaagttgcacagaaacatgctgcagagctggaagtacaagtatcagctctt 244
             |||||||| |||| ||  ||| | |||| ||||||||||||||||||||||||| |||||
Sbjct: 50052 gatcaacttgaagctgagcagcagcatgttgcagagctggaagtacaagtatcatctctt 50111

                                                         
Query: 245   gatcaacagctgcaagaagctgagatccattacaagaacaaggt 288
              | ||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 50112 aaacaacagctgcaagaaactgagatccattacaagcacaaggt 50155



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 101/118 (85%)
 Strand = Plus / Plus

                                                                         
Query: 11    cttacaagcaagatgcaggagcatgcaaacttagtccacgaaaaagatcagttggagcaa 70
             ||||||| ||| ||||| |||||||||||||| ||||| |||||||||  |||||| |||
Sbjct: 49741 cttacaaccaaaatgcaagagcatgcaaacttggtccatgaaaaagatgcgttggaacaa 49800

                                                                       
Query: 71    caattgctggaagtcaggaaggaactggaggctgcttaccgaaccatagctaatcagg 128
             ||||| |||||||| |||||||||||  | | ||||||||  |||||||| |||||||
Sbjct: 49801 caattactggaagttaggaaggaactaaatgatgcttaccataccatagcaaatcagg 49858



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                         
Query: 353   agcaagagtgctgaaatggagaagaaggtacaggaccttgagcagaagttgcagctagct 412
             ||||||||||||||||||||||||||| || |  ||||||||||||| |||||| |||||
Sbjct: 51039 agcaagagtgctgaaatggagaagaagatagaacaccttgagcagaaattgcaggtagct 51098

                        
Query: 413   tattccaaatc 423
             ||| |||||||
Sbjct: 51099 tatgccaaatc 51109



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                         
Query: 551   cagcaacaactgcgggaaccctctggtatcatggccttcaagttcatcttgggcgtcgct 610
             |||||| ||||||| || || ||||||||||||||||| ||||||||| |||| ||||| 
Sbjct: 51323 cagcaagaactgcgagagccttctggtatcatggcctttaagttcatcctgggagtcgcg 51382

                  
Query: 611   ctgct 615
             |||||
Sbjct: 51383 ctgct 51387
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  190 bits (96), Expect = 4e-45
 Identities = 147/164 (89%)
 Strand = Plus / Plus

                                                                            
Query: 125      caggaagagcaagcttcagtgagggagataaagtgggatgcatataagacgtattcagcg 184
                ||||||||||||| ||||||||||||||||||||||||||||||||||| ||  |||| |
Sbjct: 31228390 caggaagagcaagtttcagtgagggagataaagtgggatgcatataagaagttctcagag 31228449

                                                                            
Query: 185      gatcaactagaagttgcacagaaacatgctgcagagctggaagtacaagtatcagctctt 244
                |||||||| |||| ||  ||| | |||| ||||||||||||||||||||||||| |||||
Sbjct: 31228450 gatcaacttgaagctgagcagcagcatgttgcagagctggaagtacaagtatcatctctt 31228509

                                                            
Query: 245      gatcaacagctgcaagaagctgagatccattacaagaacaaggt 288
                 | ||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 31228510 aaacaacagctgcaagaaactgagatccattacaagcacaaggt 31228553



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 101/118 (85%)
 Strand = Plus / Plus

                                                                            
Query: 11       cttacaagcaagatgcaggagcatgcaaacttagtccacgaaaaagatcagttggagcaa 70
                ||||||| ||| ||||| |||||||||||||| ||||| |||||||||  |||||| |||
Sbjct: 31228139 cttacaaccaaaatgcaagagcatgcaaacttggtccatgaaaaagatgcgttggaacaa 31228198

                                                                          
Query: 71       caattgctggaagtcaggaaggaactggaggctgcttaccgaaccatagctaatcagg 128
                ||||| |||||||| |||||||||||  | | ||||||||  |||||||| |||||||
Sbjct: 31228199 caattactggaagttaggaaggaactaaatgatgcttaccataccatagcaaatcagg 31228256



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                            
Query: 353      agcaagagtgctgaaatggagaagaaggtacaggaccttgagcagaagttgcagctagct 412
                ||||||||||||||||||||||||||| || |  ||||||||||||| |||||| |||||
Sbjct: 31229437 agcaagagtgctgaaatggagaagaagatagaacaccttgagcagaaattgcaggtagct 31229496

                           
Query: 413      tattccaaatc 423
                ||| |||||||
Sbjct: 31229497 tatgccaaatc 31229507



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                            
Query: 551      cagcaacaactgcgggaaccctctggtatcatggccttcaagttcatcttgggcgtcgct 610
                |||||| ||||||| || || ||||||||||||||||| ||||||||| |||| ||||| 
Sbjct: 31229721 cagcaagaactgcgagagccttctggtatcatggcctttaagttcatcctgggagtcgcg 31229780

                     
Query: 611      ctgct 615
                |||||
Sbjct: 31229781 ctgct 31229785
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>gb|AY103926.1| Zea mays PCO137834 mRNA sequence
          Length = 1818

 Score =  143 bits (72), Expect = 8e-31
 Identities = 186/224 (83%)
 Strand = Plus / Plus

                                                                       
Query: 53  aaagatcagttggagcaacaattgctggaagtcaggaaggaactggaggctgcttaccga 112
           |||||| ||||||| ||||| ||||||||||| ||||||||| |||| | ||| ||||  
Sbjct: 670 aaagatgagttggaacaacagttgctggaagtgaggaaggaattggatggtgcctaccac 729

                                                                       
Query: 113 accatagctaatcaggaagagcaagcttcagtgagggagataaagtgggatgcatataag 172
           |||||||| ||||||||||| || ||||| |||||||||||||||||||| || | || |
Sbjct: 730 accatagcaaatcaggaagaacaggcttctgtgagggagataaagtgggacgcttttagg 789

                                                                       
Query: 173 acgtattcagcggatcaactagaagttgcacagaaacatgctgcagagctggaagtacaa 232
           | ||| || | |||||  || |||| ||  ||| | | |||||  ||||||||| |||||
Sbjct: 790 aagtactcggaggatcgtctggaagctgagcagcagcgtgctgaggagctggaactacaa 849

                                                       
Query: 233 gtatcagctcttgatcaacagctgcaagaagctgagatccatta 276
           ||| |||||||| | |||||||| ||||||||||||||||||||
Sbjct: 850 gtagcagctcttaaacaacagctccaagaagctgagatccatta 893



 Score =  105 bits (53), Expect = 2e-19
 Identities = 83/93 (89%)
 Strand = Plus / Plus

                                                                        
Query: 344  caaaatgtgagcaagagtgctgaaatggagaagaaggtacaggaccttgagcagaagttg 403
            ||||| || ||| |||||| |||| |||||| |||||| |||||||||||||||||| ||
Sbjct: 1120 caaaaagtaagcgagagtgttgaattggagaggaaggtgcaggaccttgagcagaagctg 1179

                                             
Query: 404  cagctagcttattccaaatctgatgaacaggca 436
            ||||||||||||||||| ||||| |||||||||
Sbjct: 1180 cagctagcttattccaagtctgacgaacaggca 1212



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 578  atcatggccttcaagttcatcttggg 603
            ||||||||||||||||||||| ||||
Sbjct: 1342 atcatggccttcaagttcatcctggg 1367
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>dbj|AK058602.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-H09, full
           insert sequence
          Length = 888

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 101/123 (82%)
 Strand = Plus / Plus

                                                                       
Query: 284 aaggttgcagaggagagtgagaaactcgctcttgtcaatacgcagctcaacaagctgacc 343
           |||||| |||| ||||| |||||||| ||||| || || ||| |  ||| |||| |||| 
Sbjct: 157 aaggttacagaagagagggagaaacttgctctcgttaacacggaagtcagcaagttgaca 216

                                                                       
Query: 344 caaaatgtgagcaagagtgctgaaatggagaagaaggtacaggaccttgagcagaagttg 403
           || ||  | ||||||||||||||||||||||||||| || |  ||||||||||||| |||
Sbjct: 217 cagaagcttagcaagagtgctgaaatggagaagaagatagaacaccttgagcagaaattg 276

              
Query: 404 cag 406
           |||
Sbjct: 277 cag 279



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                       
Query: 551 cagcaacaactgcgggaaccctctggtatcatggccttcaagttcatcttgggcgtcgct 610
           |||||| ||||||| || || ||||||||||||||||| ||||||||| |||| ||||| 
Sbjct: 397 cagcaagaactgcgagagccttctggtatcatggcctttaagttcatcctgggagtcgcg 456

                
Query: 611 ctgct 615
           |||||
Sbjct: 457 ctgct 461
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>gb|AY112235.1| Zea mays CL7269_1 mRNA sequence
          Length = 634

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 424 tgatgaacaggcaaaggatgca 445
           ||||||||||||||||||||||
Sbjct: 222 tgatgaacaggcaaaggatgca 243
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>gb|AC097268.10| Pan troglodytes  BAC RP43-43O8 (Roswell Park Cancer Institute) complete
             sequence
          Length = 241278

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 502   agaacaggacttatctcaggc 522
             |||||||||||||||||||||
Sbjct: 27512 agaacaggacttatctcaggc 27492
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 403      gcagctagcttattccaaatc 423
                |||||||||||||||||||||
Sbjct: 41343310 gcagctagcttattccaaatc 41343290
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>gb|AF265216.1|AF265216 Gallus gallus multidrug resistance protein 1 mRNA, partial cds
          Length = 1322

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 361  tgctgaaatggagaagaaggtacag 385
            |||||||||||||||| ||||||||
Sbjct: 1298 tgctgaaatggagaaggaggtacag 1322
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>dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0432C03
          Length = 164394

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 403   gcagctagcttattccaaatc 423
             |||||||||||||||||||||
Sbjct: 34803 gcagctagcttattccaaatc 34783
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>ref|XM_575436.1| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9430071P14 gene
           (LOC500085), mRNA
          Length = 1592

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 578 atcatggccttcaagttcatc 598
           |||||||||||||||||||||
Sbjct: 750 atcatggccttcaagttcatc 770
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>dbj|AK105972.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F03, full
            insert sequence
          Length = 1240

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 403  gcagctagcttattccaaatc 423
            |||||||||||||||||||||
Sbjct: 1073 gcagctagcttattccaaatc 1053
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>dbj|AK068247.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013136H16, full
            insert sequence
          Length = 1245

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 403  gcagctagcttattccaaatc 423
            |||||||||||||||||||||
Sbjct: 1078 gcagctagcttattccaaatc 1058
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>gb|AC153795.1| Mus musculus  BAC RP23-276L17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 182285

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    ggaagtcaggaaggaactgg 98
             ||||||||||||||||||||
Sbjct: 69938 ggaagtcaggaaggaactgg 69919
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>gb|AC123732.9| Mus musculus chromosome 1, clone RP23-459I8, complete sequence
          Length = 158620

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    tgctggaagtcaggaaggaa 94
             ||||||||||||||||||||
Sbjct: 63313 tgctggaagtcaggaaggaa 63294
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>gb|AC132350.4| Mus musculus BAC clone RP24-95A6 from chromosome 6, complete sequence
          Length = 177167

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     aattgctggaagtcaggaag 91
              ||||||||||||||||||||
Sbjct: 129798 aattgctggaagtcaggaag 129817
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>gb|AC170163.1| Homo sapiens chromosome 1 clone WI2-3014I21, complete sequence
          Length = 40554

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   ttgcacagaaacatgctgca 217
             ||||||||||||||||||||
Sbjct: 16108 ttgcacagaaacatgctgca 16089
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>gb|AC159247.2| Mus musculus BAC clone RP24-249C9 from chromosome 6, complete sequence
          Length = 190474

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    aattgctggaagtcaggaag 91
             ||||||||||||||||||||
Sbjct: 77007 aattgctggaagtcaggaag 77026
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>ref|XM_415419.1| PREDICTED: Gallus gallus similar to KIAA0310 protein (LOC417136),
            mRNA
          Length = 4761

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 239  gctcttgatcaacagctgca 258
            ||||||||||||||||||||
Sbjct: 4066 gctcttgatcaacagctgca 4047
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>gb|AC122200.4| Mus musculus BAC clone RP23-64D23 from 6, complete sequence
          Length = 243483

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     ggaagtcaggaaggaactgg 98
              ||||||||||||||||||||
Sbjct: 233817 ggaagtcaggaaggaactgg 233798
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>gb|AC104099.5| Mus musculus BAC clone RP24-372J8 from 3, complete sequence
          Length = 148259

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   accttgagcagaagttgcag 406
             ||||||||||||||||||||
Sbjct: 49644 accttgagcagaagttgcag 49663
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>gb|AC145966.2| Pan troglodytes BAC clone RP43-17M9 from 7, complete sequence
          Length = 197140

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   aaatggagaagaaggtacag 385
             ||||||||||||||||||||
Sbjct: 54079 aaatggagaagaaggtacag 54098
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>gb|AC073341.10| Homo sapiens BAC clone RP11-549I23 from 7, complete sequence
          Length = 185574

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   aaatggagaagaaggtacag 385
             ||||||||||||||||||||
Sbjct: 27076 aaatggagaagaaggtacag 27057
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>emb|AL671862.6| Human DNA sequence from clone RP11-810H18 on chromosome 1, complete
             sequence
          Length = 62080

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   ttgcacagaaacatgctgca 217
             ||||||||||||||||||||
Sbjct: 48715 ttgcacagaaacatgctgca 48696
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>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome
          Length = 1144377

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 243    ttgatcaacagctgcaagaa 262
              ||||||||||||||||||||
Sbjct: 871196 ttgatcaacagctgcaagaa 871215
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>emb|BX571870.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
             12/17
          Length = 348505

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   aatctgatgaacaggcaaag 439
             ||||||||||||||||||||
Sbjct: 78883 aatctgatgaacaggcaaag 78902
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>gb|AF529123.1| Uncultured epsilon proteobacterium clone FTLM3 16S ribosomal RNA
           gene, partial sequence
          Length = 1422

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 ctaatcaggaagagcaagct 139
           ||||||||||||||||||||
Sbjct: 63  ctaatcaggaagagcaagct 44
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>gb|AF529118.1| Uncultured epsilon proteobacterium clone FTLM173 16S ribosomal RNA
           gene, partial sequence
          Length = 1435

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 ctaatcaggaagagcaagct 139
           ||||||||||||||||||||
Sbjct: 67  ctaatcaggaagagcaagct 48
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>gb|DQ408986.1| Uncultured bacterium clone s101 16S ribosomal RNA gene, partial
           sequence
          Length = 403

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 ctaatcaggaagagcaagct 139
           ||||||||||||||||||||
Sbjct: 63  ctaatcaggaagagcaagct 44
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>dbj|AB232924.1| Oryzias latipes hox gene cluster, complete cds, contains hoxDb
          Length = 220448

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   cagctgcaagaagctgagat 270
             ||||||||||||||||||||
Sbjct: 68027 cagctgcaagaagctgagat 68008
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>dbj|AB240470.1| Uncultured bacterium gene for 16S rRNA, partial sequence, clone:
           SRRT24
          Length = 1478

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 ctaatcaggaagagcaagct 139
           ||||||||||||||||||||
Sbjct: 91  ctaatcaggaagagcaagct 72
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>dbj|AB240464.1| Uncultured bacterium gene for 16S rRNA, partial sequence, clone:
           SRRT15
          Length = 1479

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 ctaatcaggaagagcaagct 139
           ||||||||||||||||||||
Sbjct: 91  ctaatcaggaagagcaagct 72
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>gb|AC106768.3| Homo sapiens chromosome 5 clone RP11-270H9, complete sequence
          Length = 194270

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    agaagctgagatccattaca 278
              ||||||||||||||||||||
Sbjct: 189086 agaagctgagatccattaca 189067
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>gb|AC106744.2| Homo sapiens chromosome 5 clone RP11-124N3, complete sequence
          Length = 131320

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   agaagctgagatccattaca 278
             ||||||||||||||||||||
Sbjct: 70324 agaagctgagatccattaca 70343
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>gb|AC024248.7| Homo sapiens BAC clone RP11-659O3 from 4, complete sequence
          Length = 202340

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 280   gaacaaggttgcagaggagagtga 303
             |||||||||| |||||||||||||
Sbjct: 57446 gaacaaggttacagaggagagtga 57423
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>ref|XM_686936.1| PREDICTED: Danio rerio im:7148063 (im:7148063), mRNA
          Length = 1048

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 501 aagaacaggacttatctcaggctc 524
           |||||||||| |||||||||||||
Sbjct: 36  aagaacaggaattatctcaggctc 59
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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 228     tacaagtatcagctcttgat 247
               ||||||||||||||||||||
Sbjct: 1830121 tacaagtatcagctcttgat 1830102
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>gb|AY064402.1| Leishmania major SRP54-like protein gene, partial cds
          Length = 2469

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 578  atcatggccttcaagttcatcttg 601
            ||||||||||| ||||||||||||
Sbjct: 1608 atcatggccttgaagttcatcttg 1585
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>gb|BC056714.1| Danio rerio im:7148063, mRNA (cDNA clone IMAGE:6791245), partial
           cds
          Length = 1860

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 501 aagaacaggacttatctcaggctc 524
           |||||||||| |||||||||||||
Sbjct: 12  aagaacaggaattatctcaggctc 35
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>gb|DQ336051.1| Uncultured bacterium clone RGJ27 16S ribosomal RNA gene, partial
           sequence
          Length = 580

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 ctaatcaggaagagcaagct 139
           ||||||||||||||||||||
Sbjct: 74  ctaatcaggaagagcaagct 55
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>gb|AC006552.7|AC006552 Homo sapiens chromosome 4 clone C0084L10 map 4p16, complete sequence
          Length = 185393

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 72   aattgctggaagtcaggaag 91
            ||||||||||||||||||||
Sbjct: 2718 aattgctggaagtcaggaag 2699
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>gb|DQ325489.1| Uncultured bacterium isolate SSCP band Eu-b24 16S ribosomal RNA
           gene, partial sequence
          Length = 497

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 ctaatcaggaagagcaagct 139
           ||||||||||||||||||||
Sbjct: 91  ctaatcaggaagagcaagct 72
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>dbj|AB080644.1| Sulfuricurvum kujiense gene for 16S rRNA, partial sequence,
           strain:YK-3
          Length = 1400

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 ctaatcaggaagagcaagct 139
           ||||||||||||||||||||
Sbjct: 38  ctaatcaggaagagcaagct 19
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>gb|AF071892.1|AF071892 Prunus armeniaca omega-6 fatty acid desaturase (O6FAD) mRNA, partial
            cds
          Length = 1219

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 260  gaagctgagatccattacaagaac 283
            |||||| |||||||||||||||||
Sbjct: 1110 gaagctcagatccattacaagaac 1087
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>dbj|AB030609.1| Uncultured epsilon proteobacterium 1061 gene for 16S ribosomal RNA,
           partial sequence, clone: 1061
          Length = 1454

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 ctaatcaggaagagcaagct 139
           ||||||||||||||||||||
Sbjct: 68  ctaatcaggaagagcaagct 49


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,612,735
Number of Sequences: 3902068
Number of extensions: 5612735
Number of successful extensions: 109458
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109297
Number of HSP's gapped (non-prelim): 161
length of query: 638
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 615
effective length of database: 17,143,297,704
effective search space: 10543128087960
effective search space used: 10543128087960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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