ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105317.1| Zea mays PCO123556 mRNA sequence 246 6e-62
2dbj|AK062756.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 2e-58
3gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genom... 143 6e-31
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 143 6e-31
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 143 6e-31
6ref|NM_119519.2| Arabidopsis thaliana unknown protein AT4G33630 ... 48 0.027
7ref|NM_179157.1| Arabidopsis thaliana unknown protein AT4G33630 ... 48 0.027
8ref|NM_119520.2| Arabidopsis thaliana unknown protein AT4G33640 ... 48 0.027
9gb|BT025572.1| Arabidopsis thaliana At4g33640 mRNA, complete cds 48 0.027
10emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, ... 48 0.027
11emb|AL031394.1|ATT16L1 Arabidopsis thaliana DNA chromosome 4, BA... 48 0.027
12gb|AC148971.3| Medicago truncatula chromosome 2 BAC clone mth2-7... 48 0.027
13emb|BX829162.1|CNS0A3EX Arabidopsis thaliana Full-length cDNA Co... 48 0.027
14emb|BX828619.1|CNS0A3FS Arabidopsis thaliana Full-length cDNA Co... 48 0.027
15gb|AY087101.1| Arabidopsis thaliana clone 31672 mRNA, complete s... 48 0.027
16dbj|AP006357.1| Lotus japonicus genomic DNA, chromosome 4, clone... 48 0.027
17gb|DQ144724.1| Bifidobacterium breve Tkt (tkt), HrcA (hrcA), Dna... 44 0.43
18gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 44 0.43
19ref|XM_748369.1| Aspergillus fumigatus Af293 Rho guanyl nucleoti... 42 1.7
20emb|Z93059.1|SLZ93059 S.latifolia mRNA, clone CCLS 86.1 42 1.7
21gb|AC090563.17| Mus musculus chromosome 6, clone RP23-451F7, com... 42 1.7
22gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 6.6
23gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 6.6
24gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 6.6
25ref|XM_594837.2| PREDICTED: Bos taurus similar to two pore segme... 40 6.6
26ref|XM_421389.1| PREDICTED: Gallus gallus similar to kinesin lig... 40 6.6
27gb|AC147837.2| Xenopus tropicalis clone CH216-28I17, complete se... 40 6.6
28gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 6.6
29gb|AC161228.7| Mus musculus chromosome 3, clone RP24-77I5, compl... 40 6.6
30gb|AC122841.4| Mus musculus BAC clone RP23-194E5 from 3, complet... 40 6.6
31emb|AJ971884.1| Streptomyces sp. Bt 47 partial 16S rRNA gene, is... 40 6.6
32ref|XM_504456.1| Yarrowia lipolytica CLIB122, YALI0E27181g predi... 40 6.6
33emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.6
34emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete ... 40 6.6
35emb|AJ633046.1| Ipomoea nil partial mRNA for putative CRC transc... 40 6.6
36dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 40 6.6
37emb|CR406513.1| Gallus gallus finished cDNA, clone ChEST731l14 40 6.6
38emb|CR390855.1| Gallus gallus finished cDNA, clone ChEST378n2 40 6.6
39gb|AC133794.2| Homo sapiens 12 BAC RP11-193M21 (Roswell Park Can... 40 6.6
40gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.6
41dbj|AB100016.1| Leiognathus elongatus mitochondrial genes for NA... 40 6.6
42gb|AC154860.2| Mus musculus BAC clone RP23-9N20 from 13, complet... 40 6.6
43gb|AC154321.2| Mus musculus BAC clone RP23-316B9 from 13, comple... 40 6.6
44emb|Z71633.1|SCYNR018W S.cerevisiae chromosome XIV reading frame... 40 6.6
45emb|AJ558236.1|HSA558236 Homo sapiens partial CART1 gene for car... 40 6.6
46gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 6.6
47gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.6
48emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 40 6.6 
>gb|AY105317.1| Zea mays PCO123556 mRNA sequence
          Length = 730

 Score =  246 bits (124), Expect = 6e-62
 Identities = 205/232 (88%)
 Strand = Plus / Plus

                                                                       
Query: 91  acgtcgaggaggaggtcgggaggctcaaggaggagatccagaggctcggccagcagcagc 150
           |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 191 acgtggaggaggaggtcgggaggctcaaggaggagatccataggctcggccagcagcagc 250

                                                                       
Query: 151 ccgacggctcctacaaggtcaaatttggtgtcatcttcaatgatgaccgatgtgcaaaca 210
           |||| ||||| ||||||||||| ||||| ||  ||||||| || || || |||||||| |
Sbjct: 251 ccgatggctcttacaaggtcaagtttggcgttctcttcaacgacgatcggtgtgcaaata 310

                                                                       
Query: 211 tatttgaagcattagttggcaccttgcgggccgccaagaagaggaaagttgtcacctacg 270
           | ||||||||| |||||||||||||| |||||||||||||||||||  |  | |||||||
Sbjct: 311 tctttgaagcactagttggcaccttgagggccgccaagaagaggaagatcttgacctacg 370

                                                               
Query: 271 acggtgaaatgcttctgcagggtgtccatgacaatgtggagataaccctgtt 322
           | || ||  |||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 371 aaggcgagctgcttctgcaaggtgtccatgacaacgtggagataaccctgtt 422
to top
>dbj|AK062756.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-G08, full
           insert sequence
          Length = 543

 Score =  234 bits (118), Expect = 2e-58
 Identities = 226/262 (86%)
 Strand = Plus / Plus

                                                                       
Query: 91  acgtcgaggaggaggtcgggaggctcaaggaggagatccagaggctcggccagcagcagc 150
           |||| ||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 85  acgtggaggaggaggtggggaagctcaaggaggagatccagaggctcggccagaagcagc 144

                                                                       
Query: 151 ccgacggctcctacaaggtcaaatttggtgtcatcttcaatgatgaccgatgtgcaaaca 210
           |||| || ||||||||||| |  || ||||| |||||||| |||||||| ||||||||||
Sbjct: 145 ccgatggatcctacaaggtaactttcggtgttatcttcaacgatgaccgttgtgcaaaca 204

                                                                       
Query: 211 tatttgaagcattagttggcaccttgcgggccgccaagaagaggaaagttgtcacctacg 270
           ||||||||||| |||| |||||||||||||| ||||||||||| ||| |||| |  || |
Sbjct: 205 tatttgaagcactagtcggcaccttgcgggctgccaagaagagaaaaattgttaagtatg 264

                                                                       
Query: 271 acggtgaaatgcttctgcagggtgtccatgacaatgtggagataaccctgttcgctcccc 330
           | |||||  ||||||| ||||| |  ||||||||||| ||||||||||||||  |||| |
Sbjct: 265 atggtgagctgcttctacagggggctcatgacaatgttgagataaccctgttgcctcctc 324

                                 
Query: 331 ccgcggtcgctgatgcttgaag 352
           | |||||||||| ||| |||||
Sbjct: 325 cagcggtcgctgctgcctgaag 346
to top
>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete
             sequence
          Length = 150155

 Score =  143 bits (72), Expect = 6e-31
 Identities = 150/176 (85%)
 Strand = Plus / Minus

                                                                         
Query: 177   ggtgtcatcttcaatgatgaccgatgtgcaaacatatttgaagcattagttggcaccttg 236
             ||||| |||||||| |||||||| ||||||||||||||||||||| |||| |||||||||
Sbjct: 41692 ggtgttatcttcaacgatgaccgttgtgcaaacatatttgaagcactagtcggcaccttg 41633

                                                                         
Query: 237   cgggccgccaagaagaggaaagttgtcacctacgacggtgaaatgcttctgcagggtgtc 296
             ||||| ||||||||||| ||| |||| |  || || |||||  ||||||| ||||| |  
Sbjct: 41632 cgggctgccaagaagagaaaaattgttaagtatgatggtgagctgcttctacagggggct 41573

                                                                     
Query: 297   catgacaatgtggagataaccctgttcgctccccccgcggtcgctgatgcttgaag 352
             ||||||||||| ||||||||||||||  |||| || |||||||||| ||| |||||
Sbjct: 41572 catgacaatgttgagataaccctgttgcctcctccagcggtcgctgctgcctgaag 41517



 Score =  109 bits (55), Expect = 9e-21
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                         
Query: 91    acgtcgaggaggaggtcgggaggctcaaggaggagatccagaggctcggccagcagcagc 150
             |||| ||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 43594 acgtggaggaggaggtggggaagctcaaggaggagatccagaggctcggccagaagcagc 43535

                                
Query: 151   ccgacggctcctacaaggt 169
             |||| || |||||||||||
Sbjct: 43534 ccgatggatcctacaaggt 43516
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  143 bits (72), Expect = 6e-31
 Identities = 150/176 (85%)
 Strand = Plus / Plus

                                                                            
Query: 177      ggtgtcatcttcaatgatgaccgatgtgcaaacatatttgaagcattagttggcaccttg 236
                ||||| |||||||| |||||||| ||||||||||||||||||||| |||| |||||||||
Sbjct: 27262703 ggtgttatcttcaacgatgaccgttgtgcaaacatatttgaagcactagtcggcaccttg 27262762

                                                                            
Query: 237      cgggccgccaagaagaggaaagttgtcacctacgacggtgaaatgcttctgcagggtgtc 296
                ||||| ||||||||||| ||| |||| |  || || |||||  ||||||| ||||| |  
Sbjct: 27262763 cgggctgccaagaagagaaaaattgttaagtatgatggtgagctgcttctacagggggct 27262822

                                                                        
Query: 297      catgacaatgtggagataaccctgttcgctccccccgcggtcgctgatgcttgaag 352
                ||||||||||| ||||||||||||||  |||| || |||||||||| ||| |||||
Sbjct: 27262823 catgacaatgttgagataaccctgttgcctcctccagcggtcgctgctgcctgaag 27262878



 Score =  109 bits (55), Expect = 9e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                            
Query: 91       acgtcgaggaggaggtcgggaggctcaaggaggagatccagaggctcggccagcagcagc 150
                |||| ||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 27260801 acgtggaggaggaggtggggaagctcaaggaggagatccagaggctcggccagaagcagc 27260860

                                   
Query: 151      ccgacggctcctacaaggt 169
                |||| || |||||||||||
Sbjct: 27260861 ccgatggatcctacaaggt 27260879
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  143 bits (72), Expect = 6e-31
 Identities = 150/176 (85%)
 Strand = Plus / Plus

                                                                            
Query: 177      ggtgtcatcttcaatgatgaccgatgtgcaaacatatttgaagcattagttggcaccttg 236
                ||||| |||||||| |||||||| ||||||||||||||||||||| |||| |||||||||
Sbjct: 27354026 ggtgttatcttcaacgatgaccgttgtgcaaacatatttgaagcactagtcggcaccttg 27354085

                                                                            
Query: 237      cgggccgccaagaagaggaaagttgtcacctacgacggtgaaatgcttctgcagggtgtc 296
                ||||| ||||||||||| ||| |||| |  || || |||||  ||||||| ||||| |  
Sbjct: 27354086 cgggctgccaagaagagaaaaattgttaagtatgatggtgagctgcttctacagggggct 27354145

                                                                        
Query: 297      catgacaatgtggagataaccctgttcgctccccccgcggtcgctgatgcttgaag 352
                ||||||||||| ||||||||||||||  |||| || |||||||||| ||| |||||
Sbjct: 27354146 catgacaatgttgagataaccctgttgcctcctccagcggtcgctgctgcctgaag 27354201



 Score =  109 bits (55), Expect = 9e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                            
Query: 91       acgtcgaggaggaggtcgggaggctcaaggaggagatccagaggctcggccagcagcagc 150
                |||| ||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 27352124 acgtggaggaggaggtggggaagctcaaggaggagatccagaggctcggccagaagcagc 27352183

                                   
Query: 151      ccgacggctcctacaaggt 169
                |||| || |||||||||||
Sbjct: 27352184 ccgatggatcctacaaggt 27352202
to top
>ref|NM_119519.2| Arabidopsis thaliana unknown protein AT4G33630 transcript variant
            AT4G33630.1 mRNA, complete cds
          Length = 2873

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 186  ttcaatgatgaccgatgtgcaaacatatttgaagcattagttgg 229
            |||||||| || |||||||| ||||| ||||||||||| |||||
Sbjct: 2853 ttcaatgacgatcgatgtgccaacatctttgaagcattggttgg 2810
to top
>ref|NM_179157.1| Arabidopsis thaliana unknown protein AT4G33630 transcript variant
            AT4G33630.2 mRNA, complete cds
          Length = 2877

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 186  ttcaatgatgaccgatgtgcaaacatatttgaagcattagttgg 229
            |||||||| || |||||||| ||||| ||||||||||| |||||
Sbjct: 2857 ttcaatgacgatcgatgtgccaacatctttgaagcattggttgg 2814
to top
>ref|NM_119520.2| Arabidopsis thaliana unknown protein AT4G33640 mRNA, complete cds
          Length = 559

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 186 ttcaatgatgaccgatgtgcaaacatatttgaagcattagttgg 229
           |||||||| || |||||||| ||||| ||||||||||| |||||
Sbjct: 192 ttcaatgacgatcgatgtgccaacatctttgaagcattggttgg 235
to top
>gb|BT025572.1| Arabidopsis thaliana At4g33640 mRNA, complete cds
          Length = 288

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 186 ttcaatgatgaccgatgtgcaaacatatttgaagcattagttgg 229
           |||||||| || |||||||| ||||| ||||||||||| |||||
Sbjct: 100 ttcaatgacgatcgatgtgccaacatctttgaagcattggttgg 143
to top
>emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 79
          Length = 199536

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                          
Query: 186    ttcaatgatgaccgatgtgcaaacatatttgaagcattagttgg 229
              |||||||| || |||||||| ||||| ||||||||||| |||||
Sbjct: 188005 ttcaatgacgatcgatgtgccaacatctttgaagcattggttgg 187962
to top
>emb|AL031394.1|ATT16L1 Arabidopsis thaliana DNA chromosome 4, BAC clone T16L1 (ESSAII project)
          Length = 98124

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 186   ttcaatgatgaccgatgtgcaaacatatttgaagcattagttgg 229
             |||||||| || |||||||| ||||| ||||||||||| |||||
Sbjct: 40687 ttcaatgacgatcgatgtgccaacatctttgaagcattggttgg 40644
to top
>gb|AC148971.3| Medicago truncatula chromosome 2 BAC clone mth2-79e23, complete
             sequence
          Length = 108394

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 190   atgatgaccgatgtgcaaacatatttgaagca 221
             ||||||||| ||||||||| ||||||||||||
Sbjct: 38995 atgatgaccaatgtgcaaatatatttgaagca 38964



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 273   ggtgaaatgcttctgcagggtgtccatgacaatgtgga 310
             |||||| |||| ||||| || |||||||||||||||||
Sbjct: 38912 ggtgaattgctgctgcaaggagtccatgacaatgtgga 38875
to top
>emb|BX829162.1|CNS0A3EX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL77ZB03 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 468

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 186 ttcaatgatgaccgatgtgcaaacatatttgaagcattagttgg 229
           |||||||| || |||||||| ||||| ||||||||||| |||||
Sbjct: 112 ttcaatgacgatcgatgtgccaacatctttgaagcattggttgg 155
to top
>emb|BX828619.1|CNS0A3FS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL22ZE03 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 502

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 186 ttcaatgatgaccgatgtgcaaacatatttgaagcattagttgg 229
           |||||||| || |||||||| ||||| ||||||||||| |||||
Sbjct: 144 ttcaatgacgatcgatgtgccaacatctttgaagcattggttgg 187
to top
>gb|AY087101.1| Arabidopsis thaliana clone 31672 mRNA, complete sequence
          Length = 516

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 186 ttcaatgatgaccgatgtgcaaacatatttgaagcattagttgg 229
           |||||||| || |||||||| ||||| ||||||||||| |||||
Sbjct: 157 ttcaatgacgatcgatgtgccaacatctttgaagcattggttgg 200
to top
>dbj|AP006357.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT36C13, TM0100a,
             complete sequence
          Length = 79575

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 190   atgatgaccgatgtgcaaacatatttgaagca 221
             ||||||| ||||| ||||||||||||||||||
Sbjct: 74935 atgatgatcgatgcgcaaacatatttgaagca 74904
to top
>gb|DQ144724.1| Bifidobacterium breve Tkt (tkt), HrcA (hrcA), DnaJ2 (dnaJ2),
            hypothetical protein, and Bac (bac) genes, complete cds
          Length = 6640

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 147  cagcccgacggctcctacaagg 168
            ||||||||||||||||||||||
Sbjct: 1426 cagcccgacggctcctacaagg 1405
to top
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 147    cagcccgacggctcctacaagg 168
              ||||||||||||||||||||||
Sbjct: 497155 cagcccgacggctcctacaagg 497134
to top
>ref|XM_748369.1| Aspergillus fumigatus Af293 Rho guanyl nucleotide exchange factor
            (Afu5g11890) partial mRNA
          Length = 4656

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 98   ggaggaggtcgggaggctcaaggaggaga 126
            ||||||| |||||||||||||| ||||||
Sbjct: 4551 ggaggagatcgggaggctcaagaaggaga 4579
to top
>emb|Z93059.1|SLZ93059 S.latifolia mRNA, clone CCLS 86.1
          Length = 464

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 192 gatgaccgatgtgcaaacatatttgaagc 220
           |||||||| |||||||| |||||||||||
Sbjct: 54  gatgaccgctgtgcaaatatatttgaagc 82
to top
>gb|AC090563.17| Mus musculus chromosome 6, clone RP23-451F7, complete sequence
          Length = 199986

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 467   actcatgcatgatctatgcaa 487
             |||||||||||||||||||||
Sbjct: 53667 actcatgcatgatctatgcaa 53687
to top
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 141     cagcagcagcccgacggctc 160
               ||||||||||||||||||||
Sbjct: 3991504 cagcagcagcccgacggctc 3991523
to top
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 135     ctcggccagcagcagcccga 154
               ||||||||||||||||||||
Sbjct: 1856016 ctcggccagcagcagcccga 1856035
to top
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 146    gcagcccgacggctcctacaaggt 169
              ||||||||||||||| ||||||||
Sbjct: 433179 gcagcccgacggctcgtacaaggt 433156
to top
>ref|XM_594837.2| PREDICTED: Bos taurus similar to two pore segment channel 2
           (LOC516679), mRNA
          Length = 1731

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 137 cggccagcagcagcccgacg 156
           ||||||||||||||||||||
Sbjct: 151 cggccagcagcagcccgacg 132
to top
>ref|XM_421389.1| PREDICTED: Gallus gallus similar to kinesin light chain 1J; KLC1J
            (LOC423484), mRNA
          Length = 3682

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 203  tgcaaacatatttgaagcat 222
            ||||||||||||||||||||
Sbjct: 2752 tgcaaacatatttgaagcat 2771
to top
>gb|AC147837.2| Xenopus tropicalis clone CH216-28I17, complete sequence
          Length = 181178

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 205  caaacatatttgaagcatta 224
            ||||||||||||||||||||
Sbjct: 9449 caaacatatttgaagcatta 9430
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 146     gcagcccgacggctcctacaaggt 169
               ||||||||||||||| ||||||||
Sbjct: 3280746 gcagcccgacggctcgtacaaggt 3280723
to top
>gb|AC161228.7| Mus musculus chromosome 3, clone RP24-77I5, complete sequence
          Length = 222551

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 289  agggtgtccatgacaatgtggaga 312
            |||||||||||||| |||||||||
Sbjct: 9545 agggtgtccatgaccatgtggaga 9522
to top
>gb|AC122841.4| Mus musculus BAC clone RP23-194E5 from 3, complete sequence
          Length = 200088

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 289   agggtgtccatgacaatgtggaga 312
             |||||||||||||| |||||||||
Sbjct: 64183 agggtgtccatgaccatgtggaga 64206
to top
>emb|AJ971884.1| Streptomyces sp. Bt 47 partial 16S rRNA gene, isolate Bt 47
          Length = 1395

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 313 taaccctgttcgctcccccc 332
           ||||||||||||||||||||
Sbjct: 714 taaccctgttcgctcccccc 695
to top
>ref|XM_504456.1| Yarrowia lipolytica CLIB122, YALI0E27181g predicted mRNA
          Length = 2067

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 112 ggctcaaggaggagatccag 131
           ||||||||||||||||||||
Sbjct: 593 ggctcaaggaggagatccag 612
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 146     gcagcccgacggctcctacaaggt 169
               ||||||||||||||| ||||||||
Sbjct: 3011921 gcagcccgacggctcgtacaaggt 3011898
to top
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29
          Length = 300100

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   gccagcagcagcccgacggc 158
             ||||||||||||||||||||
Sbjct: 94232 gccagcagcagcccgacggc 94251
to top
>emb|AJ633046.1| Ipomoea nil partial mRNA for putative CRC transcription factor 2
           (crc2 gene)
          Length = 350

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 tcaaggaggagatccagagg 134
           ||||||||||||||||||||
Sbjct: 266 tcaaggaggagatccagagg 285
to top
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 205    caaacatatttgaagcatta 224
              ||||||||||||||||||||
Sbjct: 686832 caaacatatttgaagcatta 686851
to top
>emb|CR406513.1| Gallus gallus finished cDNA, clone ChEST731l14
          Length = 1201

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 203 tgcaaacatatttgaagcat 222
           ||||||||||||||||||||
Sbjct: 269 tgcaaacatatttgaagcat 288
to top
>emb|CR390855.1| Gallus gallus finished cDNA, clone ChEST378n2
          Length = 1108

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 203 tgcaaacatatttgaagcat 222
           ||||||||||||||||||||
Sbjct: 722 tgcaaacatatttgaagcat 741
to top
>gb|AC133794.2| Homo sapiens 12 BAC RP11-193M21 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 89995

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 295  tccatgacaatgtggagata 314
            ||||||||||||||||||||
Sbjct: 6835 tccatgacaatgtggagata 6816
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     cacgtcgaggaggaggtcgg 109
              ||||||||||||||||||||
Sbjct: 875454 cacgtcgaggaggaggtcgg 875435
to top
>dbj|AB100016.1| Leiognathus elongatus mitochondrial genes for NADH dehydrogenase
            subunits 4, tRNA-His, tRNA-Ser, tRNA-Leu, NADH
            dehydrogenase subunits 5
          Length = 3419

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 38   agcatcatcggagaagaaaccggcgagg 65
            |||||| | |||||||||||||||||||
Sbjct: 2784 agcatctttggagaagaaaccggcgagg 2757
to top
>gb|AC154860.2| Mus musculus BAC clone RP23-9N20 from 13, complete sequence
          Length = 192309

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 288    cagggtgtccatgacaatgt 307
              ||||||||||||||||||||
Sbjct: 191794 cagggtgtccatgacaatgt 191813
to top
>gb|AC154321.2| Mus musculus BAC clone RP23-316B9 from 13, complete sequence
          Length = 177816

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 288   cagggtgtccatgacaatgt 307
             ||||||||||||||||||||
Sbjct: 63656 cagggtgtccatgacaatgt 63637
to top
>emb|Z71633.1|SCYNR018W S.cerevisiae chromosome XIV reading frame ORF YNR018w
          Length = 1757

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  ggccagcagcagcccgacgg 157
            ||||||||||||||||||||
Sbjct: 1180 ggccagcagcagcccgacgg 1161
to top
>emb|AJ558236.1|HSA558236 Homo sapiens partial CART1 gene for cartilage paired-class
            homeoprotein 1, exons 1-3 and joined CDS
          Length = 6836

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 295  tccatgacaatgtggagata 314
            ||||||||||||||||||||
Sbjct: 6369 tccatgacaatgtggagata 6388
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 146     gcagcccgacggctcctacaaggt 169
               ||||||||||||||| ||||||||
Sbjct: 1865026 gcagcccgacggctcgtacaaggt 1865049
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 137     cggccagcagcagcccgacg 156
               ||||||||||||||||||||
Sbjct: 1125158 cggccagcagcagcccgacg 1125177
to top
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 112     ggctcaaggaggagatccag 131
               ||||||||||||||||||||
Sbjct: 3221629 ggctcaaggaggagatccag 3221648


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,210,394
Number of Sequences: 3902068
Number of extensions: 4210394
Number of successful extensions: 94349
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93696
Number of HSP's gapped (non-prelim): 652
length of query: 491
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 469
effective length of database: 17,147,199,772
effective search space: 8042036693068
effective search space used: 8042036693068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top