| Clone Name | basd27g14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470601.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 741 Score = 113 bits (57), Expect = 6e-22 Identities = 90/101 (89%) Strand = Plus / Plus Query: 127 ccagcaaaagcaccagctcctgtttctgtccaggtggaagatgatgatccagaggaacca 186 |||||||||||| || || ||||| | |||||| |||||||||||||||||||||||||| Sbjct: 505 ccagcaaaagcatcaacttctgttgcagtccagctggaagatgatgatccagaggaacca 564 Query: 187 ccagggtttggtttgagtgaccttcagcgcagcagcatcat 227 ||||| |||||||| ||||| | ||||||||||| |||||| Sbjct: 565 ccaggatttggtttcagtgatcatcagcgcagcaacatcat 605 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 316 ggggatgccgatgatgaggatcctgatgtgcctcctggattcggttaa 363 ||||||| ||||| ||||||||||||||||||||||| || |||||| Sbjct: 694 ggggatgatgatgaggaggatcctgatgtgcctcctgggtttggttaa 741 Score = 40.1 bits (20), Expect = 6.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 260 agaatcatgcccaagtgaaaccaaatggtggtgagc 295 |||||||| ||||||||||||||||| ||||||| Sbjct: 638 agaatcataaccaagtgaaaccaaatgaaggtgagc 673
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 113 bits (57), Expect = 6e-22 Identities = 90/101 (89%) Strand = Plus / Plus Query: 127 ccagcaaaagcaccagctcctgtttctgtccaggtggaagatgatgatccagaggaacca 186 |||||||||||| || || ||||| | |||||| |||||||||||||||||||||||||| Sbjct: 6757986 ccagcaaaagcatcaacttctgttgcagtccagctggaagatgatgatccagaggaacca 6758045 Query: 187 ccagggtttggtttgagtgaccttcagcgcagcagcatcat 227 ||||| |||||||| ||||| | ||||||||||| |||||| Sbjct: 6758046 ccaggatttggtttcagtgatcatcagcgcagcaacatcat 6758086 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 316 ggggatgccgatgatgaggatcctgatgtgcctcctggattcggttaac 364 ||||||| ||||| ||||||||||||||||||||||| || ||||||| Sbjct: 6758175 ggggatgatgatgaggaggatcctgatgtgcctcctgggtttggttaac 6758223 Score = 40.1 bits (20), Expect = 6.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 260 agaatcatgcccaagtgaaaccaaatggtggtgagc 295 |||||||| ||||||||||||||||| ||||||| Sbjct: 6758119 agaatcataaccaagtgaaaccaaatgaaggtgagc 6758154
>gb|AC099732.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1203D03, complete sequence Length = 82352 Score = 113 bits (57), Expect = 6e-22 Identities = 90/101 (89%) Strand = Plus / Minus Query: 127 ccagcaaaagcaccagctcctgtttctgtccaggtggaagatgatgatccagaggaacca 186 |||||||||||| || || ||||| | |||||| |||||||||||||||||||||||||| Sbjct: 66759 ccagcaaaagcatcaacttctgttgcagtccagctggaagatgatgatccagaggaacca 66700 Query: 187 ccagggtttggtttgagtgaccttcagcgcagcagcatcat 227 ||||| |||||||| ||||| | ||||||||||| |||||| Sbjct: 66699 ccaggatttggtttcagtgatcatcagcgcagcaacatcat 66659 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 316 ggggatgccgatgatgaggatcctgatgtgcctcctggattcggttaac 364 ||||||| ||||| ||||||||||||||||||||||| || ||||||| Sbjct: 66570 ggggatgatgatgaggaggatcctgatgtgcctcctgggtttggttaac 66522 Score = 40.1 bits (20), Expect = 6.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 260 agaatcatgcccaagtgaaaccaaatggtggtgagc 295 |||||||| ||||||||||||||||| ||||||| Sbjct: 66626 agaatcataaccaagtgaaaccaaatgaaggtgagc 66591
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 113 bits (57), Expect = 6e-22 Identities = 90/101 (89%) Strand = Plus / Plus Query: 127 ccagcaaaagcaccagctcctgtttctgtccaggtggaagatgatgatccagaggaacca 186 |||||||||||| || || ||||| | |||||| |||||||||||||||||||||||||| Sbjct: 6757199 ccagcaaaagcatcaacttctgttgcagtccagctggaagatgatgatccagaggaacca 6757258 Query: 187 ccagggtttggtttgagtgaccttcagcgcagcagcatcat 227 ||||| |||||||| ||||| | ||||||||||| |||||| Sbjct: 6757259 ccaggatttggtttcagtgatcatcagcgcagcaacatcat 6757299 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 316 ggggatgccgatgatgaggatcctgatgtgcctcctggattcggttaac 364 ||||||| ||||| ||||||||||||||||||||||| || ||||||| Sbjct: 6757388 ggggatgatgatgaggaggatcctgatgtgcctcctgggtttggttaac 6757436 Score = 40.1 bits (20), Expect = 6.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 260 agaatcatgcccaagtgaaaccaaatggtggtgagc 295 |||||||| ||||||||||||||||| ||||||| Sbjct: 6757332 agaatcataaccaagtgaaaccaaatgaaggtgagc 6757367
>dbj|AK101799.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066F19, full insert sequence Length = 1024 Score = 113 bits (57), Expect = 6e-22 Identities = 90/101 (89%) Strand = Plus / Plus Query: 127 ccagcaaaagcaccagctcctgtttctgtccaggtggaagatgatgatccagaggaacca 186 |||||||||||| || || ||||| | |||||| |||||||||||||||||||||||||| Sbjct: 592 ccagcaaaagcatcaacttctgttgcagtccagctggaagatgatgatccagaggaacca 651 Query: 187 ccagggtttggtttgagtgaccttcagcgcagcagcatcat 227 ||||| |||||||| ||||| | ||||||||||| |||||| Sbjct: 652 ccaggatttggtttcagtgatcatcagcgcagcaacatcat 692 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 316 ggggatgccgatgatgaggatcctgatgtgcctcctggattcggttaac 364 ||||||| ||||| ||||||||||||||||||||||| || ||||||| Sbjct: 781 ggggatgatgatgaggaggatcctgatgtgcctcctgggtttggttaac 829 Score = 40.1 bits (20), Expect = 6.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 260 agaatcatgcccaagtgaaaccaaatggtggtgagc 295 |||||||| ||||||||||||||||| ||||||| Sbjct: 725 agaatcataaccaagtgaaaccaaatgaaggtgagc 760
>ref|XM_455594.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F11297g predicted mRNA Length = 1482 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 271 caagtgaaaccaaatggtggtgagcta 297 |||||||||||||||| |||||||||| Sbjct: 892 caagtgaaaccaaatgttggtgagcta 866
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 271 caagtgaaaccaaatggtggtgagcta 297 |||||||||||||||| |||||||||| Sbjct: 1040638 caagtgaaaccaaatgttggtgagcta 1040664
>gb|AF522437.1| Thymallus thymallus haplotype At13 tRNA-Pro gene, partial sequence; control region and tRNA-Phe gene, complete sequence; mitochondrial genes for mitochondrial products Length = 1099 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 91 aagctgaagggaaatagaaaaggaga 116 |||||||||||||| ||||||||||| Sbjct: 649 aagctgaagggaaaaagaaaaggaga 624
>gb|AF522436.1| Thymallus thymallus haplotype At12 tRNA-Pro gene, partial sequence; control region and tRNA-Phe gene, complete sequence; mitochondrial genes for mitochondrial products Length = 1098 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 91 aagctgaagggaaatagaaaaggaga 116 |||||||||||||| ||||||||||| Sbjct: 649 aagctgaagggaaaaagaaaaggaga 624
>gb|AF522435.1| Thymallus thymallus haplotype At11 tRNA-Pro gene, partial sequence; control region and tRNA-Phe gene, complete sequence; mitochondrial genes for mitochondrial products Length = 1099 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 91 aagctgaagggaaatagaaaaggaga 116 |||||||||||||| ||||||||||| Sbjct: 649 aagctgaagggaaaaagaaaaggaga 624
>gb|AF522434.1| Thymallus thymallus haplotype At10 tRNA-Pro gene, partial sequence; control region and tRNA-Phe gene, complete sequence; mitochondrial genes for mitochondrial products Length = 1099 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 91 aagctgaagggaaatagaaaaggaga 116 |||||||||||||| ||||||||||| Sbjct: 649 aagctgaagggaaaaagaaaaggaga 624
>gb|AF522404.1| Thymallus thymallus haplotype Da10 tRNA-Pro gene, partial sequence; control region and tRNA-Phe gene, complete sequence; mitochondrial genes for mitochondrial products Length = 1099 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 91 aagctgaagggaaatagaaaaggaga 116 |||||||||||||| ||||||||||| Sbjct: 649 aagctgaagggaaaaagaaaaggaga 624
>gb|AF522403.1| Thymallus thymallus haplotype Da9 tRNA-Pro gene, partial sequence; control region and tRNA-Phe gene, complete sequence; mitochondrial genes for mitochondrial products Length = 1099 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 91 aagctgaagggaaatagaaaaggaga 116 |||||||||||||| ||||||||||| Sbjct: 649 aagctgaagggaaaaagaaaaggaga 624
>ref|NM_106322.2| Arabidopsis thaliana GTP binding / translation initiation factor AT1G76720 mRNA, complete cds Length = 3606 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 ttctgtccaggtggaagatga 170 ||||||||||||||||||||| Sbjct: 1467 ttctgtccaggtggaagatga 1487
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 318 ggatgccgatgatgaggatcctgat 342 ||||||||||||||||| ||||||| Sbjct: 3745873 ggatgccgatgatgaggttcctgat 3745897
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 gctgaagggaaatagaaaagg 113 ||||||||||||||||||||| Sbjct: 4647986 gctgaagggaaatagaaaagg 4647966
>gb|AC008194.9| Drosophila melanogaster clone BACR49A05, complete sequence Length = 181437 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 atgatgaggatcctgatgtgc 346 ||||||||||||||||||||| Sbjct: 110577 atgatgaggatcctgatgtgc 110597
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 gctgaagggaaatagaaaagg 113 ||||||||||||||||||||| Sbjct: 4644471 gctgaagggaaatagaaaagg 4644451
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 gctgaagggaaatagaaaagg 113 ||||||||||||||||||||| Sbjct: 4645567 gctgaagggaaatagaaaagg 4645547
>ref|XM_388845.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08669.1) partial mRNA Length = 2400 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 gagaagccatgtgatgatggg 258 ||||||||||||||||||||| Sbjct: 2028 gagaagccatgtgatgatggg 2008
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 gctgaagggaaatagaaaagg 113 ||||||||||||||||||||| Sbjct: 4710990 gctgaagggaaatagaaaagg 4710970
>ref|XM_788808.1| PREDICTED: Strongylocentrotus purpuratus similar to transient receptor protein 5 (LOC589158), mRNA Length = 2862 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 328 gatgaggatcctgatgtgcct 348 ||||||||||||||||||||| Sbjct: 2713 gatgaggatcctgatgtgcct 2733
>emb|AL136962.19| Human DNA sequence from clone RP11-273F15 on chromosome 13 Contains a pseudogene similar to part of NADH dehydrogenase 3 (NADH dehydrogenase, subunit 3 (complex I)) (MTND3) and a non-metastatic cells 1, protein (NM23A) expressed in (NME1)(NM23, NM23-H1) pseudogene, complete sequence Length = 165655 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 tgtccaggtggaagatgatga 173 ||||||||||||||||||||| Sbjct: 17119 tgtccaggtggaagatgatga 17099
>ref|XM_780775.1| PREDICTED: Strongylocentrotus purpuratus similar to Short transient receptor potential channel 4 (TrpC4) (trp-related protein 4) (hTrp-4) (hTrp4) (LOC580737), mRNA Length = 2085 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 328 gatgaggatcctgatgtgcct 348 ||||||||||||||||||||| Sbjct: 1936 gatgaggatcctgatgtgcct 1956
>ref|NM_133124.1| Drosophila melanogaster CG7502-RA (CG7502), mRNA Length = 3192 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 atgatgaggatcctgatgtgc 346 ||||||||||||||||||||| Sbjct: 820 atgatgaggatcctgatgtgc 800
>gb|AC010718.5|AC010718 Arabidopsis thaliana chromosome 1 BAC F28O16 genomic sequence, complete sequence Length = 87684 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 ttctgtccaggtggaagatga 170 ||||||||||||||||||||| Sbjct: 34047 ttctgtccaggtggaagatga 34027
>gb|AE003511.4| Drosophila melanogaster chromosome X, section 63 of 74 of the complete sequence Length = 297969 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 atgatgaggatcctgatgtgc 346 ||||||||||||||||||||| Sbjct: 98959 atgatgaggatcctgatgtgc 98979
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 gctgaagggaaatagaaaagg 113 ||||||||||||||||||||| Sbjct: 4791604 gctgaagggaaatagaaaagg 4791584
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 gctgaagggaaatagaaaagg 113 ||||||||||||||||||||| Sbjct: 4644344 gctgaagggaaatagaaaagg 4644324
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 gctgaagggaaatagaaaagg 113 ||||||||||||||||||||| Sbjct: 4638613 gctgaagggaaatagaaaagg 4638593
>ref|XM_473465.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1053 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gtggaagatgatgatccaga 179 |||||||||||||||||||| Sbjct: 364 gtggaagatgatgatccaga 383
>ref|XM_614634.2| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 3 (caV1.3), mRNA Length = 6500 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aagatgatgatccagaggaa 183 |||||||||||||||||||| Sbjct: 4996 aagatgatgatccagaggaa 5015
>ref|XM_876930.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 19 (caV1.3), mRNA Length = 6557 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aagatgatgatccagaggaa 183 |||||||||||||||||||| Sbjct: 5053 aagatgatgatccagaggaa 5072
>ref|XM_876859.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 18 (caV1.3), mRNA Length = 6476 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aagatgatgatccagaggaa 183 |||||||||||||||||||| Sbjct: 4972 aagatgatgatccagaggaa 4991
>ref|XM_876800.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 17 (caV1.3), mRNA Length = 6560 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aagatgatgatccagaggaa 183 |||||||||||||||||||| Sbjct: 5056 aagatgatgatccagaggaa 5075
>ref|XM_876741.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 16 (caV1.3), mRNA Length = 6512 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aagatgatgatccagaggaa 183 |||||||||||||||||||| Sbjct: 5008 aagatgatgatccagaggaa 5027
>ref|XM_865676.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 4 (caV1.3), mRNA Length = 6617 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aagatgatgatccagaggaa 183 |||||||||||||||||||| Sbjct: 5113 aagatgatgatccagaggaa 5132
>ref|XM_876627.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 15 (caV1.3), mRNA Length = 6557 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aagatgatgatccagaggaa 183 |||||||||||||||||||| Sbjct: 5053 aagatgatgatccagaggaa 5072
>ref|XM_876565.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 14 (caV1.3), mRNA Length = 6602 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aagatgatgatccagaggaa 183 |||||||||||||||||||| Sbjct: 5098 aagatgatgatccagaggaa 5117
>ref|XM_876506.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 13 (caV1.3), mRNA Length = 6617 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aagatgatgatccagaggaa 183 |||||||||||||||||||| Sbjct: 5113 aagatgatgatccagaggaa 5132
>ref|XM_876442.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 12 (caV1.3), mRNA Length = 6572 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aagatgatgatccagaggaa 183 |||||||||||||||||||| Sbjct: 5068 aagatgatgatccagaggaa 5087
>ref|XM_876386.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 11 (caV1.3), mRNA Length = 6572 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aagatgatgatccagaggaa 183 |||||||||||||||||||| Sbjct: 5068 aagatgatgatccagaggaa 5087
>ref|XM_876321.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 10 (caV1.3), mRNA Length = 6632 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aagatgatgatccagaggaa 183 |||||||||||||||||||| Sbjct: 5128 aagatgatgatccagaggaa 5147
>ref|XM_876260.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 9 (caV1.3), mRNA Length = 6674 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aagatgatgatccagaggaa 183 |||||||||||||||||||| Sbjct: 5167 aagatgatgatccagaggaa 5186
>ref|XM_876194.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 8 (caV1.3), mRNA Length = 6701 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aagatgatgatccagaggaa 183 |||||||||||||||||||| Sbjct: 5197 aagatgatgatccagaggaa 5216
>ref|XM_876136.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 7 (caV1.3), mRNA Length = 5849 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aagatgatgatccagaggaa 183 |||||||||||||||||||| Sbjct: 5140 aagatgatgatccagaggaa 5159
>ref|XM_876073.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 6 (caV1.3), mRNA Length = 6707 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aagatgatgatccagaggaa 183 |||||||||||||||||||| Sbjct: 5203 aagatgatgatccagaggaa 5222
>ref|XM_875996.1| PREDICTED: Bos taurus voltage-gated calcium channel alpha 1D subunit, transcript variant 5 (caV1.3), mRNA Length = 6548 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aagatgatgatccagaggaa 183 |||||||||||||||||||| Sbjct: 5044 aagatgatgatccagaggaa 5063
>ref|XM_416232.1| PREDICTED: Gallus gallus similar to Rotavirus X associated non-structural protein (RoXaN) (LOC417994), mRNA Length = 671 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 agaaaaggagagcaagcttc 125 |||||||||||||||||||| Sbjct: 470 agaaaaggagagcaagcttc 489
>gb|AC091268.2| Rattus norvegicus strain Brown Norway clone RP31-536L14, complete sequence Length = 148631 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 aaagcaccagctcctgtttctgtc 156 |||| ||||||||||||||||||| Sbjct: 1781 aaagaaccagctcctgtttctgtc 1804
>gb|AC090444.2| Rattus norvegicus strain Brown Norway clone RP31-210K23, complete sequence Length = 37897 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 aaagcaccagctcctgtttctgtc 156 |||| ||||||||||||||||||| Sbjct: 32823 aaagaaccagctcctgtttctgtc 32846
>emb|CT005239.3| Pan troglodytes chromosome X clone PTB-125H24 map Xq28, complete sequence Length = 262483 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 aaatagaaaaggagagcaagcttc 125 |||||||||||||||| ||||||| Sbjct: 201320 aaatagaaaaggagagaaagcttc 201297
>emb|CR847854.12| Zebrafish DNA sequence from clone DKEY-229J6 in linkage group 8, complete sequence Length = 155365 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 aacagcaacaggacacaggg 78 |||||||||||||||||||| Sbjct: 75721 aacagcaacaggacacaggg 75740
>gb|AC161221.7| Mus musculus chromosome 1, clone RP24-228M19, complete sequence Length = 164548 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 gaagggaaatagaaaaggag 115 |||||||||||||||||||| Sbjct: 108716 gaagggaaatagaaaaggag 108697
>emb|Z82195.2|HS274L7 Human DNA sequence from clone RP1-274L7 on chromosome X Contains a novel gene and a novel gene similar to uncharacterized hypothalamus protein HT011, complete sequence Length = 119566 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 gggaaatagaaaaggagagcaagc 122 ||||||||||||||||||| |||| Sbjct: 54134 gggaaatagaaaaggagagaaagc 54157
>emb|AL391139.19| Human DNA sequence from clone RP11-353K22 on chromosome X Contains the gene for a novel GTPase and two CpG islands, complete sequence Length = 128899 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 aaatagaaaaggagagcaagcttc 125 |||||||||||||||| ||||||| Sbjct: 3930 aaatagaaaaggagagaaagcttc 3953
>emb|AL354889.14| Human DNA sequence from clone RP11-290F20 on chromosome 20 Contains three novel genes, complete sequence Length = 160311 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 tgtccaggtggaagatgatg 172 |||||||||||||||||||| Sbjct: 119483 tgtccaggtggaagatgatg 119464
>gb|AC113633.5| Rattus norvegicus 4 BAC CH230-350N19 (Children's Hospital Oakland Research Institute) complete sequence Length = 133392 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 aaagcaccagctcctgtttctgtc 156 |||| ||||||||||||||||||| Sbjct: 103541 aaagaaccagctcctgtttctgtc 103518
>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17, complete sequence Length = 167269 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gtggaagatgatgatccaga 179 |||||||||||||||||||| Sbjct: 5535 gtggaagatgatgatccaga 5554
>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence Length = 127506 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gtggaagatgatgatccaga 179 |||||||||||||||||||| Sbjct: 111354 gtggaagatgatgatccaga 111373
>emb|BX957307.12| Zebrafish DNA sequence from clone CH211-117E20 in linkage group 6, complete sequence Length = 171645 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 tggaagatgatgatccagag 180 |||||||||||||||||||| Sbjct: 39884 tggaagatgatgatccagag 39903
>emb|BX530064.8| Zebrafish DNA sequence from clone CH211-232M19 in linkage group 16, complete sequence Length = 153572 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ggaaatagaaaaggagagca 119 |||||||||||||||||||| Sbjct: 71915 ggaaatagaaaaggagagca 71934
>gb|AC098613.2| Homo sapiens chromosome 3 clone RP11-24F11, complete sequence Length = 185437 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 caggtggaagatgatgatcc 176 |||||||||||||||||||| Sbjct: 18429 caggtggaagatgatgatcc 18448
>gb|AC149092.6| Pan troglodytes BAC clone CH251-553I6 from chromosome 7, complete sequence Length = 194702 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 tgtccaggtggaagatgatg 172 |||||||||||||||||||| Sbjct: 145249 tgtccaggtggaagatgatg 145230
>gb|AC012390.6| Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone BACR30L17, complete sequence Length = 174441 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 ccagctcctgtttctgtcca 158 |||||||||||||||||||| Sbjct: 102719 ccagctcctgtttctgtcca 102700
>gb|AC073057.6| Homo sapiens BAC clone RP11-114G11 from 7, complete sequence Length = 178105 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 tgtccaggtggaagatgatg 172 |||||||||||||||||||| Sbjct: 100069 tgtccaggtggaagatgatg 100088
>gb|AC154358.2| Mus musculus BAC clone RP23-173M16 from chromosome 13, complete sequence Length = 193594 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 249 tgatgatgggcagaatcatgcccaagtg 276 ||||||| ||||||||||| |||||||| Sbjct: 4778 tgatgataggcagaatcatacccaagtg 4805
>gb|AC010667.10|AC010667 Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone BACR40P19, complete sequence Length = 159570 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 ccagctcctgtttctgtcca 158 |||||||||||||||||||| Sbjct: 41580 ccagctcctgtttctgtcca 41561
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gtggaagatgatgatccaga 179 |||||||||||||||||||| Sbjct: 27842682 gtggaagatgatgatccaga 27842701
>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold Length = 1888123 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 aaagcaccagctcctgtttctgtc 156 |||| ||||||||||||||||||| Sbjct: 1207245 aaagaaccagctcctgtttctgtc 1207268
>gb|AC026303.25| Homo sapiens 3 BAC RP11-581D23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 35018 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 ctgatgtgcctcctggattcggtt 361 |||||||| ||||||||||||||| Sbjct: 32273 ctgatgtggctcctggattcggtt 32296
>gb|AC009484.3| Homo sapiens BAC clone RP11-313O11 from 2, complete sequence Length = 206074 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 gctgaagggaaatagaaaag 112 |||||||||||||||||||| Sbjct: 28871 gctgaagggaaatagaaaag 28890
>gb|AC091043.12| Homo sapiens chromosome 18, clone RP11-595B24, complete sequence Length = 208310 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 aagggaaatagaaaaggagagcaa 120 |||||||| ||||||||||||||| Sbjct: 120464 aagggaaaaagaaaaggagagcaa 120441
>gb|AF543423.1| Oregus crypticus cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 761 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 atcatagtaaagcaggagaa 242 |||||||||||||||||||| Sbjct: 267 atcatagtaaagcaggagaa 248
>dbj|AK067832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121O07, full insert sequence Length = 1499 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gtggaagatgatgatccaga 179 |||||||||||||||||||| Sbjct: 532 gtggaagatgatgatccaga 551
>gb|AE003844.5| Drosophila melanogaster chromosome 4, section 2 of 5 of the complete sequence Length = 315846 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 ccagctcctgtttctgtcca 158 |||||||||||||||||||| Sbjct: 242975 ccagctcctgtttctgtcca 242994
>gb|AC148935.6| Pan troglodytes BAC clone CH251-485J2 from chromosome 7, complete sequence Length = 215177 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 tgtccaggtggaagatgatg 172 |||||||||||||||||||| Sbjct: 156862 tgtccaggtggaagatgatg 156843
>ref|NG_000002.1| Homo sapiens immunoglobulin lambda locus (IGL@) on chromosome 22 Length = 909203 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 aaagcaggagaagccatgtg 250 |||||||||||||||||||| Sbjct: 14379 aaagcaggagaagccatgtg 14360
>emb|AL772139.9| Mouse DNA sequence from clone RP23-8O24 on chromosome 4, complete sequence Length = 109835 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 aaatggtggtgagctagtgg 301 |||||||||||||||||||| Sbjct: 78206 aaatggtggtgagctagtgg 78225
>emb|AL672194.1| Mouse DNA sequence from clone RP23-73P3 on chromosome 13, complete sequence Length = 173598 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 249 tgatgatgggcagaatcatgcccaagtg 276 ||||||| ||||||||||| |||||||| Sbjct: 84183 tgatgataggcagaatcatacccaagtg 84210
>dbj|D86993.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:23C6 Length = 39752 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 aaagcaggagaagccatgtg 250 |||||||||||||||||||| Sbjct: 21538 aaagcaggagaagccatgtg 21519 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,922,159 Number of Sequences: 3902068 Number of extensions: 4922159 Number of successful extensions: 102503 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102073 Number of HSP's gapped (non-prelim): 425 length of query: 502 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 480 effective length of database: 17,147,199,772 effective search space: 8230655890560 effective search space used: 8230655890560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)