ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27g02 |
|---|---|
| Clone Library Name | barley_pub |
>CIP8_ARATH (Q9SPL2) Ubiquitin-protein ligase CIP8 (EC 6.3.2.-)| (COP1-interacting protein 8) Length = 334 Score = 37.4 bits (85), Expect = 0.024 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +1 Query: 58 ATHWCYACRRPIRLRGQD--IICPNCNDGFIQEISEIGGALNT 180 A+HWCY C + + + D ++C CN GF++ I A ++ Sbjct: 13 ASHWCYHCNKRVVVETLDDFVVCCECNKGFVESIQPTPAAYSS 55
>RN126_HUMAN (Q9BV68) RING finger protein 126| Length = 326 Score = 35.0 bits (79), Expect = 0.12 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +1 Query: 64 HWCYACRRPIRLRGQDIICPNCNDGFIQEISE 159 ++C+ C I R D ICP C GFI+E+ E Sbjct: 11 YFCHCCSVEIVPRLPDYICPRCESGFIEELPE 42
>ZN364_MOUSE (Q9D0C1) Zinc finger protein 364 (Rabring 7)| Length = 305 Score = 35.0 bits (79), Expect = 0.12 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 16/124 (12%) Frame = +1 Query: 67 WCYACRRPIRLRGQDIICPNCNDGFIQEISE----IGGA-----LNTYGMFGPRFDRLDG 219 +C+ C+ + + + ICP C+ GFI+E+++ +GG +T F +D LD Sbjct: 21 FCHFCKGEVNPKLPEYICPRCDSGFIEEVTDDSSFLGGGGSRTDNSTATHFAELWDHLDH 80 Query: 220 RFGMMDAVSALMRRRMAEMGSNPVFDPNAAGAITARGRP-------PSIGPRLIFGSNMP 378 + D L SNP+ N A RG PS PRL Sbjct: 81 TMFLQDFRPFL--------SSNPLDQDNRA---NERGHQTHTDFWGPSRPPRLPMTRRYR 129 Query: 379 AQGS 390 ++GS Sbjct: 130 SRGS 133
>RN126_MOUSE (Q91YL2) RING finger protein 126| Length = 313 Score = 35.0 bits (79), Expect = 0.12 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +1 Query: 64 HWCYACRRPIRLRGQDIICPNCNDGFIQEISE 159 ++C+ C I R D ICP C GFI+E+ E Sbjct: 11 YFCHCCSVEIVPRLPDYICPRCESGFIEELPE 42
>R126B_XENLA (Q6IRP0) RING finger protein 126-B| Length = 312 Score = 34.3 bits (77), Expect = 0.20 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +1 Query: 46 MSDRATHWCYACRRPIRLRGQDIICPNCNDGFIQEISE 159 + + ++C++C I R + CP C+ GFI+E+ E Sbjct: 5 LPEAGRYFCHSCTAEITPRLPEYTCPRCDSGFIEELPE 42
>RN126_XENTR (Q6DIP3) RING finger protein 126| Length = 311 Score = 33.9 bits (76), Expect = 0.26 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = +1 Query: 46 MSDRATHWCYACRRPIRLRGQDIICPNCNDGFIQEISEIGGALN 177 + + ++C++C I R + CP C+ GFI+E+ E + N Sbjct: 5 LPEAGRYFCHSCTAEIIPRLPEYTCPRCDSGFIEELPETRNSEN 48
>R126A_XENLA (Q7T0Q3) RING finger protein 126-A| Length = 312 Score = 33.9 bits (76), Expect = 0.26 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = +1 Query: 64 HWCYACRRPIRLRGQDIICPNCNDGFIQEISE 159 ++C++C I R + CP C+ GFI+E+ E Sbjct: 11 YFCHSCTAEITPRLPEYTCPRCDSGFIEELPE 42
>ZN364_HUMAN (Q9Y4L5) Zinc finger protein 364 (Rabring 7) (RING finger protein| 115) Length = 304 Score = 33.1 bits (74), Expect = 0.45 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = +1 Query: 67 WCYACRRPIRLRGQDIICPNCNDGFIQEISEIGGALNTYGMFGPRFD 207 +C+ C+ + + + ICP C GFI+E+++ L G G R D Sbjct: 21 FCHFCKGEVSPKLPEYICPRCESGFIEEVTDDSSFL---GGGGSRID 64
>GSPE_ECOLI (P45759) Probable general secretion pathway protein E (Type II| traffic warden ATPase) Length = 493 Score = 31.2 bits (69), Expect = 1.7 Identities = 16/61 (26%), Positives = 28/61 (45%) Frame = -3 Query: 270 CHPSSHEGRHSVHHSKSSI*AIEAWPKHTVGVQSASYLTDLLYEAIIAVGADYILSTKTN 91 CH S ++GR ++H + A V Q+ L ++A+I G ++S T+ Sbjct: 418 CHQSGYQGRMAIHEMMVVTPELRAAIHENVDEQALERLVRQQHKALIKNGLQKVISGDTS 477 Query: 90 W 88 W Sbjct: 478 W 478
>ORC4_SCHPO (Q9Y794) Origin recognition complex subunit 4| Length = 972 Score = 31.2 bits (69), Expect = 1.7 Identities = 17/74 (22%), Positives = 33/74 (44%) Frame = +1 Query: 151 ISEIGGALNTYGMFGPRFDRLDGRFGMMDAVSALMRRRMAEMGSNPVFDPNAAGAITARG 330 + G L+T+ P ++ F ++ S + R+ + P+F RG Sbjct: 257 VESTGTNLHTHSQLNPENEQSSSEFYSLNPQSEI--RKEVVVTDQPLFSTADVPVKRKRG 314 Query: 331 RPPSIGPRLIFGSN 372 RPP P+++FG++ Sbjct: 315 RPPLNKPKILFGTS 328
>ZN689_RAT (Q99PJ7) Zinc finger protein 689 (Transcription factor HIT-39)| Length = 500 Score = 30.8 bits (68), Expect = 2.2 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -3 Query: 336 RPSSCGDCPGCIRIKHRIAAHFCHPSSHEG 247 +P C +C C R + +A H C P++H G Sbjct: 455 KPFPCLECGRCFRQRWSLAVHKCCPNTHNG 484
>SALL3_HUMAN (Q9BXA9) Sal-like protein 3 (Zinc finger protein SALL3) (hSALL3)| Length = 1300 Score = 30.8 bits (68), Expect = 2.2 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 6/94 (6%) Frame = -1 Query: 428 RPPLASTFTP---PSSLP*AGMLLPNISLGPIEGGLPRAVIA---PAALGSNTGLLPISA 267 RPP + +P PS+ A LP ++ P+ G P A IA PAA + G P+S Sbjct: 235 RPPPRPSLSPAAAPSAPGPAPSQLPGLAALPLSAGAPAAAIAGSGPAAPAAFEGAQPLS- 293 Query: 266 IRRRMRADTASIIPNRPSRRSKRGPNIP*VFKAP 165 R ++ + P P+ S P P AP Sbjct: 294 -----RPESGASTPGGPAEPS--APAAPSAAPAP 320
>THAP8_HUMAN (Q8NA92) THAP domain-containing protein 8| Length = 274 Score = 30.8 bits (68), Expect = 2.2 Identities = 22/54 (40%), Positives = 24/54 (44%) Frame = -1 Query: 479 LGPTRKLPKF*RSAPILRPPLASTFTPPSSLP*AGMLLPNISLGPIEGGLPRAV 318 LGPT PK A +L PLA TP S P LGP+ G L R V Sbjct: 133 LGPTSGSPK--TVATMLLTPLAPAPTPERSQPEVPAQQAQTGLGPVLGALQRRV 184
>LONH2_THEAC (Q9HLX6) Putative protease La homolog type 2 (EC 3.4.21.-)| Length = 493 Score = 30.0 bits (66), Expect = 3.8 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +1 Query: 109 DIICPNCNDGFIQEISEIGGALNTYGMFGPRFDRLDGRFGMMD 237 D +CPNCN IQ + T G FG F+ + FG+ + Sbjct: 141 DAVCPNCNSPKIQ--------MGTQGPFGDVFNVIGAAFGVQN 175
>SEM4F_MOUSE (Q9Z123) Semaphorin-4F precursor (Semaphorin W) (Sema W)| Length = 777 Score = 30.0 bits (66), Expect = 3.8 Identities = 19/43 (44%), Positives = 24/43 (55%) Frame = -1 Query: 446 RSAPILRPPLASTFTPPSSLP*AGMLLPNISLGPIEGGLPRAV 318 R P RPP S F PPSSL +LL + P+ G +PR+V Sbjct: 7 RPRPGPRPPPVSLFPPPSSLL---LLLLAMLSAPVCGRVPRSV 46
>TILS_MYCTU (P67151) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 323 Score = 30.0 bits (66), Expect = 3.8 Identities = 19/44 (43%), Positives = 21/44 (47%) Frame = -2 Query: 499 ARTELRGWDRRGSCRSFDGPRRFCDLPWQARLLHPRRSLEQACC 368 A T L G R RS G R + D PW LL RRS+ A C Sbjct: 126 AETVLLGLGRGSGARSIAGMRPY-DPPWCRPLLGVRRSVTHAAC 168
>TILS_MYCBO (P67152) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 323 Score = 30.0 bits (66), Expect = 3.8 Identities = 19/44 (43%), Positives = 21/44 (47%) Frame = -2 Query: 499 ARTELRGWDRRGSCRSFDGPRRFCDLPWQARLLHPRRSLEQACC 368 A T L G R RS G R + D PW LL RRS+ A C Sbjct: 126 AETVLLGLGRGSGARSIAGMRPY-DPPWCRPLLGVRRSVTHAAC 168
>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)| Length = 2001 Score = 30.0 bits (66), Expect = 3.8 Identities = 17/39 (43%), Positives = 20/39 (51%) Frame = -1 Query: 443 SAPILRPPLASTFTPPSSLP*AGMLLPNISLGPIEGGLP 327 SAP L PP +S PP+ P AG+ P P G LP Sbjct: 193 SAPSLPPPPSSLQAPPAITPIAGLSAP----APASGSLP 227
>SOTB_PSESM (Q888L8) Probable sugar efflux transporter| Length = 407 Score = 29.6 bits (65), Expect = 5.0 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Frame = -1 Query: 419 LASTFTPPSSLP*A-GMLLPNISLGPIEGGLPRAVIAPAALGSNTGLLPISAIRRRMRAD 243 LA PP A G+L SL + G +P + ALG T L I+ + + Sbjct: 130 LAVRIAPPGKQVQALGLLATGTSLAMVLG-IPLGRVLGEALGWRTTFLGIAGVAALVVFL 188 Query: 242 TASIIPNRPSRRSKRGPNIP*VFKAPPISLI 150 A +P PS+ S ++P +FK P + I Sbjct: 189 LARALPLLPSQNSGSLRSLPILFKRPRLMAI 219
>HEM1_RHOS4 (Q04512) 5-aminolevulinate synthase 1 (EC 2.3.1.37)| (5-aminolevulinic acid synthase) (Delta-aminolevulinate synthase) (Delta-ALA synthetase) Length = 407 Score = 29.6 bits (65), Expect = 5.0 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 9/107 (8%) Frame = +1 Query: 85 RPIRLRGQDIICPNCNDGFIQEISEIG---GAL------NTYGMFGPRFDRLDGRFGMMD 237 RPI + + + + + G I+EI +I GAL + GM+GPR + R G+MD Sbjct: 178 RPILVAFESVYSMDGDFGRIEEICDIADEFGALKYIDEVHAVGMYGPRGGGVAERDGLMD 237 Query: 238 AVSALMRRRMAEMGSNPVFDPNAAGAITARGRPPSIGPRLIFGSNMP 378 + + G VF A + S P IF +++P Sbjct: 238 RIDIINGTLGKAYG---VFGGYIAASSKMCDAVRSYAPGFIFSTSLP 281
>DPOD_CANAL (P46588) DNA polymerase delta catalytic subunit (EC 2.7.7.7) (DNA| polymerase III) Length = 1038 Score = 29.6 bits (65), Expect = 5.0 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = +1 Query: 70 CYACRRPIRLRGQDIICPNC-NDGFIQEISEIGGALNTYGMFGPRFDRL 213 C +CR P++ +CPNC DG ++ G AL+ +F RL Sbjct: 942 CVSCRTPLKKDNLGALCPNCIKDGKGPDL--YGNALSQMNYLENKFSRL 988
>RD23D_ARATH (Q84L30) Putative DNA repair protein RAD23-4 (RAD23-like protein 4)| (AtRAD23-4) Length = 378 Score = 29.3 bits (64), Expect = 6.5 Identities = 15/47 (31%), Positives = 21/47 (44%) Frame = +1 Query: 271 EMGSNPVFDPNAAGAITARGRPPSIGPRLIFGSNMPAQGSDEGGVNV 411 E +NP+ P A A A P+ P +F MPA + G N+ Sbjct: 207 EQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNL 253
>CNOT3_MOUSE (Q8K0V4) CCR4-NOT transcription complex subunit 3 (CCR4-associated| factor 3) Length = 751 Score = 29.3 bits (64), Expect = 6.5 Identities = 19/55 (34%), Positives = 24/55 (43%) Frame = +1 Query: 289 VFDPNAAGAITARGRPPSIGPRLIFGSNMPAQGSDEGGVNVLARGGRRIGADRQN 453 V PNA+G A+ RPPS P G GG + + G GA +QN Sbjct: 375 VAPPNASGPSNAQPRPPSAQP-------SGGSGGGSGGSSSNSNSGTGGGAGKQN 422
>CAH2_CAEEL (Q18932) Putative carbonic anhydrase-like protein 2 precursor| Length = 337 Score = 28.9 bits (63), Expect = 8.5 Identities = 20/64 (31%), Positives = 29/64 (45%) Frame = -1 Query: 344 IEGGLPRAVIAPAALGSNTGLLPISAIRRRMRADTASIIPNRPSRRSKRGPNIP*VFKAP 165 IEG + AV NTG LP+ ++ +PNRP+ GP +P +K Sbjct: 57 IEGNIVEAVF------ENTGQLPVVTVKD---------LPNRPTINITGGPTMPYRYKLH 101 Query: 164 PISL 153 IS+ Sbjct: 102 QISV 105
>HRX_MOUSE (P55200) Zinc finger protein HRX (ALL-1) (Fragment)| Length = 3866 Score = 28.9 bits (63), Expect = 8.5 Identities = 16/58 (27%), Positives = 27/58 (46%) Frame = -3 Query: 477 GTDEEAAEVLTVRADSATSPGKHVYSTLVAPLSRHVAAEYQPRAN*GRPSSCGDCPGC 304 G D++++ + A+ P K + P++R+ A + P R CG CPGC Sbjct: 1006 GNDDKSSVAGSEDAEPLAPPIKPI-----KPVTRNKAPQEPPVKKGRRSRRCGQCPGC 1058
>TILS_MYCLE (O69538) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 323 Score = 28.9 bits (63), Expect = 8.5 Identities = 19/44 (43%), Positives = 21/44 (47%) Frame = -2 Query: 499 ARTELRGWDRRGSCRSFDGPRRFCDLPWQARLLHPRRSLEQACC 368 A T L G R RS G R D PW LL RRS+ +A C Sbjct: 130 AETVLLGLGRGSGARSIAGMRPH-DPPWCRPLLGVRRSVPRAAC 172
>FPG_PROMP (Q7V2X4) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)| (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (EC 4.2.99.18) (AP lyase mutM) Length = 291 Score = 28.9 bits (63), Expect = 8.5 Identities = 9/18 (50%), Positives = 14/18 (77%) Frame = +1 Query: 34 QRYKMSDRATHWCYACRR 87 +R K+S R+THWC C++ Sbjct: 274 ERQKISGRSTHWCRKCQK 291 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,755,147 Number of Sequences: 219361 Number of extensions: 1884986 Number of successful extensions: 5946 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 5573 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5937 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
