ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190942.1| Oryza sativa (japonica cultivar-group), predic... 178 1e-41
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 178 1e-41
3dbj|AP003221.2| Oryza sativa (japonica cultivar-group) genomic D... 178 1e-41
4dbj|AK103314.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 1e-41
5gb|AY108177.1| Zea mays PCO119740 mRNA sequence 105 1e-19
6gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 1.7
7dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 42 1.7
8gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
9gb|AC144735.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
10ref|XM_593419.2| PREDICTED: Bos taurus similar to LIM and senesc... 40 6.9
11ref|XM_878494.1| PREDICTED: Bos taurus similar to LIM and senesc... 40 6.9
12gb|AC134859.4| Mus musculus BAC clone RP23-363G20 from chromosom... 40 6.9
13gb|AC137967.14| Mus musculus chromosome 10, clone RP24-323I24, c... 40 6.9
14gb|AC124721.4| Mus musculus chromosome 10 clone RP23-387G19, com... 40 6.9
15gb|BC105544.1| Bos taurus similar to LIM and senescent cell anti... 40 6.9
16gb|AC115102.7| Homo sapiens chromosome 15, clone RP11-245C17, co... 40 6.9
17gb|AC048382.7| Homo sapiens chromosome 15, clone RP11-182J1, com... 40 6.9
18ref|XM_788456.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.9
19gb|AC044860.11| Homo sapiens chromosome 15, clone RP11-561C5, co... 40 6.9
20gb|AC135995.7| Homo sapiens chromosome 15, clone RP13-608F4, com... 40 6.9
21gb|AC005630.1| Homo sapiens PAC clone RP5-1129D5 from 15, comple... 40 6.9
22gb|AC010725.5| Homo sapiens BAC clone RP11-156N7 from 15, comple... 40 6.9
23gb|AC012064.3|AC012064 Homo sapiens BAC clone RP11-123N1 from 15... 40 6.9
24dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
25dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
26gb|AF296107.1|AF296107 Porcine teschovirus strain Vir 6711-12/83... 40 6.9
27gb|AC146099.3| Pan troglodytes BAC clone RP43-5L2 from chromosom... 40 6.9
28gb|AC136698.6| Homo sapiens chromosome 15, clone RP13-262C2, com... 40 6.9
29emb|BX546465.7| Mouse DNA sequence from clone RP23-167N13 on chr... 40 6.9
30dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
31dbj|AK067197.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.9
32gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 6.9
33gb|AC126806.3| Mus musculus BAC clone RP23-158J3 from chromosome... 40 6.9 
>ref|NM_190942.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1272

 Score =  178 bits (90), Expect = 1e-41
 Identities = 215/256 (83%), Gaps = 3/256 (1%)
 Strand = Plus / Plus

                                                                       
Query: 41  acaagatgtcagatagagccacacattggtgttatgcctgccgtcggccaattcgtcttc 100
           |||||||| || |||||||||| |||||||||||||||||||| || ||||||||| || 
Sbjct: 278 acaagatgccaaatagagccacgcattggtgttatgcctgccgacgtccaattcgtgtta 337

                                                                       
Query: 101 gtggacaagatataatctgccccaactgcaatgatggcttcatacaagagatcagtgaga 160
           ||||||||||||| |  |||||||||||||||||||| || |||||||| ||||||||||
Sbjct: 338 gtggacaagatattacatgccccaactgcaatgatggttttatacaagaaatcagtgaga 397

                                                                       
Query: 161 taggaggcgctttgaacacctacggtatgtttgggccacgcttcgat---cgcctagatg 217
           |||| ||  | |||||||| || ||||| ||||  ||  |||| |||   || | |||| 
Sbjct: 398 taggtggttcattgaacacttatggtatctttgacccgagctttgatgagcgtcgagata 457

                                                                       
Query: 218 gacgatttggaatgatggacgctgtgtctgccctcatgcgacgacggatggcagaaatgg 277
           || | ||||||||| |||| ||| |||||| ||| ||||||| |||||||||||||||||
Sbjct: 458 gaagttttggaatggtggaggctatgtctgaccttatgcgacaacggatggcagaaatgg 517

                           
Query: 278 gcagcaatcctgtgtt 293
           |||| |||| ||||||
Sbjct: 518 gcagaaatcgtgtgtt 533



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                       
Query: 427 cgcagaatcggcgcggaccgtcaaaacttcggcagcttcctcgtcggtcccagcctcgaa 486
           |||||||| ||||||||||||| ||| ||| |  | ||||| ||||||||||| || |||
Sbjct: 673 cgcagaattggcgcggaccgtccaaatttcagtcgtttcctagtcggtcccagtcttgaa 732

                               
Query: 487 gctctgttcgagcagctgct 506
           ||||| ||||| ||||||||
Sbjct: 733 gctctattcgaacagctgct 752
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  178 bits (90), Expect = 1e-41
 Identities = 215/256 (83%), Gaps = 3/256 (1%)
 Strand = Plus / Plus

                                                                            
Query: 41       acaagatgtcagatagagccacacattggtgttatgcctgccgtcggccaattcgtcttc 100
                |||||||| || |||||||||| |||||||||||||||||||| || ||||||||| || 
Sbjct: 33962808 acaagatgccaaatagagccacgcattggtgttatgcctgccgacgtccaattcgtgtta 33962867

                                                                            
Query: 101      gtggacaagatataatctgccccaactgcaatgatggcttcatacaagagatcagtgaga 160
                ||||||||||||| |  |||||||||||||||||||| || |||||||| ||||||||||
Sbjct: 33962868 gtggacaagatattacatgccccaactgcaatgatggttttatacaagaaatcagtgaga 33962927

                                                                            
Query: 161      taggaggcgctttgaacacctacggtatgtttgggccacgcttcgat---cgcctagatg 217
                |||| ||  | |||||||| || ||||| ||||  ||  |||| |||   || | |||| 
Sbjct: 33962928 taggtggttcattgaacacttatggtatctttgacccgagctttgatgagcgtcgagata 33962987

                                                                            
Query: 218      gacgatttggaatgatggacgctgtgtctgccctcatgcgacgacggatggcagaaatgg 277
                || | ||||||||| |||| ||| |||||| ||| ||||||| |||||||||||||||||
Sbjct: 33962988 gaagttttggaatggtggaggctatgtctgaccttatgcgacaacggatggcagaaatgg 33963047

                                
Query: 278      gcagcaatcctgtgtt 293
                |||| |||| ||||||
Sbjct: 33963048 gcagaaatcgtgtgtt 33963063



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                            
Query: 427      cgcagaatcggcgcggaccgtcaaaacttcggcagcttcctcgtcggtcccagcctcgaa 486
                |||||||| ||||||||||||| ||| ||| |  | ||||| ||||||||||| || |||
Sbjct: 33963203 cgcagaattggcgcggaccgtccaaatttcagtcgtttcctagtcggtcccagtcttgaa 33963262

                                    
Query: 487      gctctgttcgagcagctgct 506
                ||||| ||||| ||||||||
Sbjct: 33963263 gctctattcgaacagctgct 33963282
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>dbj|AP003221.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0003D09
          Length = 161970

 Score =  178 bits (90), Expect = 1e-41
 Identities = 215/256 (83%), Gaps = 3/256 (1%)
 Strand = Plus / Plus

                                                                         
Query: 41    acaagatgtcagatagagccacacattggtgttatgcctgccgtcggccaattcgtcttc 100
             |||||||| || |||||||||| |||||||||||||||||||| || ||||||||| || 
Sbjct: 94251 acaagatgccaaatagagccacgcattggtgttatgcctgccgacgtccaattcgtgtta 94310

                                                                         
Query: 101   gtggacaagatataatctgccccaactgcaatgatggcttcatacaagagatcagtgaga 160
             ||||||||||||| |  |||||||||||||||||||| || |||||||| ||||||||||
Sbjct: 94311 gtggacaagatattacatgccccaactgcaatgatggttttatacaagaaatcagtgaga 94370

                                                                         
Query: 161   taggaggcgctttgaacacctacggtatgtttgggccacgcttcgat---cgcctagatg 217
             |||| ||  | |||||||| || ||||| ||||  ||  |||| |||   || | |||| 
Sbjct: 94371 taggtggttcattgaacacttatggtatctttgacccgagctttgatgagcgtcgagata 94430

                                                                         
Query: 218   gacgatttggaatgatggacgctgtgtctgccctcatgcgacgacggatggcagaaatgg 277
             || | ||||||||| |||| ||| |||||| ||| ||||||| |||||||||||||||||
Sbjct: 94431 gaagttttggaatggtggaggctatgtctgaccttatgcgacaacggatggcagaaatgg 94490

                             
Query: 278   gcagcaatcctgtgtt 293
             |||| |||| ||||||
Sbjct: 94491 gcagaaatcgtgtgtt 94506



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                         
Query: 427   cgcagaatcggcgcggaccgtcaaaacttcggcagcttcctcgtcggtcccagcctcgaa 486
             |||||||| ||||||||||||| ||| ||| |  | ||||| ||||||||||| || |||
Sbjct: 94646 cgcagaattggcgcggaccgtccaaatttcagtcgtttcctagtcggtcccagtcttgaa 94705

                                 
Query: 487   gctctgttcgagcagctgct 506
             ||||| ||||| ||||||||
Sbjct: 94706 gctctattcgaacagctgct 94725
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>dbj|AK103314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125G22, full
           insert sequence
          Length = 1509

 Score =  178 bits (90), Expect = 1e-41
 Identities = 215/256 (83%), Gaps = 3/256 (1%)
 Strand = Plus / Plus

                                                                       
Query: 41  acaagatgtcagatagagccacacattggtgttatgcctgccgtcggccaattcgtcttc 100
           |||||||| || |||||||||| |||||||||||||||||||| || ||||||||| || 
Sbjct: 254 acaagatgccaaatagagccacgcattggtgttatgcctgccgacgtccaattcgtgtta 313

                                                                       
Query: 101 gtggacaagatataatctgccccaactgcaatgatggcttcatacaagagatcagtgaga 160
           ||||||||||||| |  |||||||||||||||||||| || |||||||| ||||||||||
Sbjct: 314 gtggacaagatattacatgccccaactgcaatgatggttttatacaagaaatcagtgaga 373

                                                                       
Query: 161 taggaggcgctttgaacacctacggtatgtttgggccacgcttcgat---cgcctagatg 217
           |||| ||  | |||||||| || ||||| ||||  ||  |||| |||   || | |||| 
Sbjct: 374 taggtggttcattgaacacttatggtatctttgacccgagctttgatgagcgtcgagata 433

                                                                       
Query: 218 gacgatttggaatgatggacgctgtgtctgccctcatgcgacgacggatggcagaaatgg 277
           || | ||||||||| |||| ||| |||||| ||| ||||||| |||||||||||||||||
Sbjct: 434 gaagttttggaatggtggaggctatgtctgaccttatgcgacaacggatggcagaaatgg 493

                           
Query: 278 gcagcaatcctgtgtt 293
           |||| |||| ||||||
Sbjct: 494 gcagaaatcgtgtgtt 509



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                       
Query: 427 cgcagaatcggcgcggaccgtcaaaacttcggcagcttcctcgtcggtcccagcctcgaa 486
           |||||||| ||||||||||||| ||| ||| |  | ||||| ||||||||||| || |||
Sbjct: 649 cgcagaattggcgcggaccgtccaaatttcagtcgtttcctagtcggtcccagtcttgaa 708

                               
Query: 487 gctctgttcgagcagctgct 506
           ||||| ||||| ||||||||
Sbjct: 709 gctctattcgaacagctgct 728
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>gb|AY108177.1| Zea mays PCO119740 mRNA sequence
          Length = 795

 Score =  105 bits (53), Expect = 1e-19
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                       
Query: 41  acaagatgtcagatagagccacacattggtgttatgcctgccgtcggccaattcgtcttc 100
           ||||||||||  |||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct: 141 acaagatgtccaatagggccacacattggtgttatgcctgtcggcggccaattcgtctcc 200

                                                
Query: 101 gtggacaagatataatctgccccaactgcaatgatgg 137
           |||| || |||||  | ||||||||||||||||||||
Sbjct: 201 gtgggcaggatatcgtatgccccaactgcaatgatgg 237



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 221 gatttggaatgatggacgctgtgtctgccctcatgcgacgacggatggcagaaatggg 278
           |||| ||||||||||| ||  ||||| |||| ||||| | |||||||| |||||||||
Sbjct: 324 gattcggaatgatggatgccatgtcttcccttatgcggcaacggatggaagaaatggg 381
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 81      ccgtcggccaattcgtcttcg 101
               |||||||||||||||||||||
Sbjct: 2065445 ccgtcggccaattcgtcttcg 2065465
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 447    tcaaaacttcggcagcttcct 467
              |||||||||||||||||||||
Sbjct: 672304 tcaaaacttcggcagcttcct 672284
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>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06,
             complete sequence
          Length = 139139

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     cgccatccctcctcctcccc 24
             ||||||||||||||||||||
Sbjct: 21310 cgccatccctcctcctcccc 21329
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>gb|AC144735.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0001A14,
              complete sequence
          Length = 129292

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      cgccatccctcctcctcccc 24
              ||||||||||||||||||||
Sbjct: 124028 cgccatccctcctcctcccc 124047
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>ref|XM_593419.2| PREDICTED: Bos taurus similar to LIM and senescent cell antigen-like
            domains 2, transcript variant 1 (LOC515401), mRNA
          Length = 1775

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 8    catccctcctcctccccgcc 27
            ||||||||||||||||||||
Sbjct: 1214 catccctcctcctccccgcc 1233
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>ref|XM_878494.1| PREDICTED: Bos taurus similar to LIM and senescent cell
           antigen-like domains 2, transcript variant 2
           (LOC515401), mRNA
          Length = 1292

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 8   catccctcctcctccccgcc 27
           ||||||||||||||||||||
Sbjct: 731 catccctcctcctccccgcc 750
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>gb|AC134859.4| Mus musculus BAC clone RP23-363G20 from chromosome 9, complete sequence
          Length = 182883

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 474    tcccagcctcgaagctctgt 493
              ||||||||||||||||||||
Sbjct: 140572 tcccagcctcgaagctctgt 140553
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>gb|AC137967.14| Mus musculus chromosome 10, clone RP24-323I24, complete sequence
          Length = 199669

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 374   tgcctgctcaagggagcgac 393
             ||||||||||||||||||||
Sbjct: 68562 tgcctgctcaagggagcgac 68581
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>gb|AC124721.4| Mus musculus chromosome 10 clone RP23-387G19, complete sequence
          Length = 216612

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   tgcctgctcaagggagcgac 393
             ||||||||||||||||||||
Sbjct: 24468 tgcctgctcaagggagcgac 24449
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>gb|BC105544.1| Bos taurus similar to LIM and senescent cell antigen-like domains 2,
            mRNA (cDNA clone IMAGE:8121439), partial cds
          Length = 1804

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 8    catccctcctcctccccgcc 27
            ||||||||||||||||||||
Sbjct: 1215 catccctcctcctccccgcc 1234
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>gb|AC115102.7| Homo sapiens chromosome 15, clone RP11-245C17, complete sequence
          Length = 165747

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     agatagagccacacattggt 70
              ||||||||||||||||||||
Sbjct: 128479 agatagagccacacattggt 128498
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>gb|AC048382.7| Homo sapiens chromosome 15, clone RP11-182J1, complete sequence
          Length = 171486

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    agatagagccacacattggt 70
             ||||||||||||||||||||
Sbjct: 76706 agatagagccacacattggt 76687
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>ref|XM_788456.1| PREDICTED: Strongylocentrotus purpuratus similar to CASK-interacting
            protein CIP98 (LOC588790), mRNA
          Length = 4695

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   aaagatacaagatgtcagat 54
            ||||||||||||||||||||
Sbjct: 2282 aaagatacaagatgtcagat 2301
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>gb|AC044860.11| Homo sapiens chromosome 15, clone RP11-561C5, complete sequence
          Length = 233775

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     agatagagccacacattggt 70
              ||||||||||||||||||||
Sbjct: 124713 agatagagccacacattggt 124732
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>gb|AC135995.7| Homo sapiens chromosome 15, clone RP13-608F4, complete sequence
          Length = 157246

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    agatagagccacacattggt 70
             ||||||||||||||||||||
Sbjct: 52729 agatagagccacacattggt 52748
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>gb|AC005630.1| Homo sapiens PAC clone RP5-1129D5 from 15, complete sequence
          Length = 137699

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    agatagagccacacattggt 70
             ||||||||||||||||||||
Sbjct: 86800 agatagagccacacattggt 86781
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>gb|AC010725.5| Homo sapiens BAC clone RP11-156N7 from 15, complete sequence
          Length = 155351

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    agatagagccacacattggt 70
             ||||||||||||||||||||
Sbjct: 71882 agatagagccacacattggt 71901
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>gb|AC012064.3|AC012064 Homo sapiens BAC clone RP11-123N1 from 15, complete sequence
          Length = 170520

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     agatagagccacacattggt 70
              ||||||||||||||||||||
Sbjct: 149160 agatagagccacacattggt 149141
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 3       tccgccatccctcctcctcc 22
               ||||||||||||||||||||
Sbjct: 2861733 tccgccatccctcctcctcc 2861752
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 5        cgccatccctcctcctcccc 24
                ||||||||||||||||||||
Sbjct: 27656752 cgccatccctcctcctcccc 27656771
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>gb|AF296107.1|AF296107 Porcine teschovirus strain Vir 6711-12/83 polyprotein gene,
           complete cds
          Length = 7017

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 39  atacaagatgtcagatagag 58
           ||||||||||||||||||||
Sbjct: 829 atacaagatgtcagatagag 848
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>gb|AC146099.3| Pan troglodytes BAC clone RP43-5L2 from chromosome 7, complete sequence
          Length = 196770

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     agatagagccacacattggt 70
              ||||||||||||||||||||
Sbjct: 159363 agatagagccacacattggt 159344
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>gb|AC136698.6| Homo sapiens chromosome 15, clone RP13-262C2, complete sequence
          Length = 169605

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     agatagagccacacattggt 70
              ||||||||||||||||||||
Sbjct: 111689 agatagagccacacattggt 111670
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>emb|BX546465.7| Mouse DNA sequence from clone RP23-167N13 on chromosome 2, complete
             sequence
          Length = 81064

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   ccaactgcaatgatggcttc 141
             ||||||||||||||||||||
Sbjct: 67266 ccaactgcaatgatggcttc 67247
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>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0050B07
          Length = 142134

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     tccgccatccctcctcctcc 22
             ||||||||||||||||||||
Sbjct: 32020 tccgccatccctcctcctcc 32039
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>dbj|AK067197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098O16, full
           insert sequence
          Length = 3943

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 5   cgccatccctcctcctcccc 24
           ||||||||||||||||||||
Sbjct: 451 cgccatccctcctcctcccc 432
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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 89      caattcgtcttcgtggacaa 108
               ||||||||||||||||||||
Sbjct: 4391877 caattcgtcttcgtggacaa 4391858
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>gb|AC126806.3| Mus musculus BAC clone RP23-158J3 from chromosome 9, complete sequence
          Length = 202590

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 474   tcccagcctcgaagctctgt 493
             ||||||||||||||||||||
Sbjct: 21392 tcccagcctcgaagctctgt 21373


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,541,953
Number of Sequences: 3902068
Number of extensions: 3541953
Number of successful extensions: 57719
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57498
Number of HSP's gapped (non-prelim): 221
length of query: 509
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 487
effective length of database: 17,147,199,772
effective search space: 8350686288964
effective search space used: 8350686288964
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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