ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27f23 |
|---|---|
| Clone Library Name | barley_pub |
>MYO9B_MOUSE (Q9QY06) Myosin-9B (Myosin IXb) (Unconventional myosin-9b)| Length = 2114 Score = 36.2 bits (82), Expect = 0.066 Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 1/38 (2%) Frame = +3 Query: 456 LREEQAAVKAQAAFRGYLARRAFRALK-GIIRLQALIR 566 L QAAV QAA+RGYL R+A+ + IIRLQ+L R Sbjct: 999 LERTQAAVYLQAAWRGYLQRQAYHHQRHSIIRLQSLCR 1036
>MYO9B_HUMAN (Q13459) Myosin-9B (Myosin IXb) (Unconventional myosin-9b)| Length = 2158 Score = 35.4 bits (80), Expect = 0.11 Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 1/38 (2%) Frame = +3 Query: 456 LREEQAAVKAQAAFRGYLARRAFRALK-GIIRLQALIR 566 L QAAV QAA+RGY R+ +R K IIRLQ+L R Sbjct: 999 LERTQAAVYLQAAWRGYWQRKLYRHQKQSIIRLQSLCR 1036
>SP17_MACFA (O19021) Sperm surface protein Sp17 (Sperm autoantigenic protein| 17) Length = 151 Score = 34.7 bits (78), Expect = 0.19 Identities = 16/29 (55%), Positives = 22/29 (75%) Frame = +3 Query: 450 EKLREEQAAVKAQAAFRGYLARRAFRALK 536 +K +EE AAVK QAAFRG++AR + +K Sbjct: 110 DKEKEEVAAVKIQAAFRGHVAREEVKKMK 138
>SP17_HUMAN (Q15506) Sperm surface protein Sp17 (Sperm autoantigenic protein| 17) (Sperm protein 17) (Sp17-1) Length = 151 Score = 34.7 bits (78), Expect = 0.19 Identities = 16/29 (55%), Positives = 22/29 (75%) Frame = +3 Query: 450 EKLREEQAAVKAQAAFRGYLARRAFRALK 536 +K +EE AAVK QAAFRG++AR + +K Sbjct: 110 DKEKEEVAAVKIQAAFRGHIAREEAKKMK 138
>MYO9B_RAT (Q63358) Myosin-9B (Myosin IXb) (Unconventional myosin-9b)| Length = 1980 Score = 34.7 bits (78), Expect = 0.19 Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 1/38 (2%) Frame = +3 Query: 456 LREEQAAVKAQAAFRGYLARRAFRALK-GIIRLQALIR 566 L +AAV QAA+RGYL R+A+ + IIRLQ+L R Sbjct: 1000 LERTRAAVYLQAAWRGYLQRQAYHHQRHSIIRLQSLCR 1037
>SP17_PAPHA (Q95230) Sperm surface protein Sp17 (Sperm autoantigenic protein| 17) Length = 163 Score = 34.7 bits (78), Expect = 0.19 Identities = 16/29 (55%), Positives = 22/29 (75%) Frame = +3 Query: 450 EKLREEQAAVKAQAAFRGYLARRAFRALK 536 +K +EE AAVK QAAFRG++AR + +K Sbjct: 110 DKEKEEVAAVKIQAAFRGHVAREEVKKMK 138
>SP17_RABIT (P36425) Sperm surface protein Sp17 (Sperm autoantigenic protein| 17) Length = 146 Score = 33.5 bits (75), Expect = 0.43 Identities = 15/29 (51%), Positives = 22/29 (75%) Frame = +3 Query: 450 EKLREEQAAVKAQAAFRGYLARRAFRALK 536 +K +EE AA+K QAAFRG+LAR + ++ Sbjct: 106 DKDKEEMAALKIQAAFRGHLAREDVKKIR 134
>AROQ_SYNY3 (P73367) 3-dehydroquinate dehydratase (EC 4.2.1.10)| (3-dehydroquinase) (Type II DHQase) Length = 152 Score = 30.8 bits (68), Expect = 2.8 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = -3 Query: 446 TNLHVRPNSNHVFHCAP--IGQVGNF*RNSIVVGANKYRLG 330 +N+H R + H+ H AP IGQ+ F G N YRLG Sbjct: 105 SNIHKRESFRHISHIAPVAIGQICGF-------GLNSYRLG 138
>SP17_MACEU (O62770) Sperm surface protein Sp17 (Sperm autoantigenic protein| 17) Length = 153 Score = 30.8 bits (68), Expect = 2.8 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = +3 Query: 390 PNGSAMENMVRIGSDVQISPEKLREEQAAVKAQAAFRGYLARRAFRALK 536 P E ++ ++S + AAVK QAAFRG+ AR+ + +K Sbjct: 98 PQEVVKEQETQVSFVEEVSTDDEEAAAAAVKIQAAFRGHKARKEVKIMK 146
>ASPM_PONPY (P62294) Abnormal spindle-like microcephaly-associated protein| homolog Length = 3471 Score = 30.4 bits (67), Expect = 3.6 Identities = 15/26 (57%), Positives = 18/26 (69%) Frame = +3 Query: 459 REEQAAVKAQAAFRGYLARRAFRALK 536 RE QAA+K Q+AFR AR+ FR K Sbjct: 1890 REHQAALKIQSAFRMAKARKQFRLFK 1915
>ASPM_BOVIN (P62285) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 3371 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = +3 Query: 438 QISPEKLREEQAAVKAQAAFRGYLARRAFRALK 536 ++ + +E +AAVK Q+AFR A++ FR LK Sbjct: 1805 KVRKQMRKEHEAAVKIQSAFRTARAQKEFRVLK 1837 Score = 30.0 bits (66), Expect = 4.8 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = +3 Query: 456 LREEQAAVKAQAAFRGYLARRAFRALKGIIRLQALIR 566 L++ AA++ QAAFRG AR R +K LQ+ R Sbjct: 1467 LQKRAAAIRLQAAFRGRRARNLCRQIKAACVLQSYWR 1503
>TR150_XENLA (Q5BJ39) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 951 Score = 30.0 bits (66), Expect = 4.8 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Frame = +3 Query: 270 DLPKAGNGKEPEFSDNSPLISEPVLVSSHN--NGIASEISNLPNGSAMENMVRIGSDVQI 443 D K+ KEPEF D +S+ + +S N + + +L G + D Sbjct: 431 DKDKSKGRKEPEFDDEPKFMSKVIAGASKNQEEEKSGKWESLHTGKEKQRKAEEMEDEPF 490 Query: 444 SPEKLREEQAAVK-AQAAFRGYLARRAFR 527 + +EE+ K +++ RG++ + FR Sbjct: 491 TERSRKEERGGSKRSESGHRGFVPEKNFR 519
>TR150_MOUSE (Q569Z6) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 951 Score = 30.0 bits (66), Expect = 4.8 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Frame = +3 Query: 270 DLPKAGNGKEPEFSDNSPLISEPVLVSSHN--NGIASEISNLPNGSAMENMVRIGSDVQI 443 D K+ KEPEF D +S+ + +S N + + +L G + D Sbjct: 431 DKDKSKGRKEPEFDDEPKFMSKVIAGASKNQEEEKSGKWESLHTGKEKQRKAEEMEDEPF 490 Query: 444 SPEKLREEQAAVK-AQAAFRGYLARRAFR 527 + +EE+ K +++ RG++ + FR Sbjct: 491 TERSRKEERGGSKRSESGHRGFVPEKNFR 519
>ILVD_CAUCR (P55186) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 617 Score = 30.0 bits (66), Expect = 4.8 Identities = 20/72 (27%), Positives = 32/72 (44%) Frame = +3 Query: 333 EPVLVSSHNNGIASEISNLPNGSAMENMVRIGSDVQISPEKLREEQAAVKAQAAFRGYLA 512 +P+L+ GI E+S+ + E + G D + R+ A++A AA A Sbjct: 545 DPILIDIPTRGITLEVSDAVLAARREAQLARGKDAWTPLNRKRDLTPALRAYAAMTTNAA 604 Query: 513 RRAFRALKGIIR 548 R A R + I R Sbjct: 605 RGAVRDVSQIER 616
>MYH14_HUMAN (Q7Z406) Myosin-14 (Myosin heavy chain, nonmuscle IIc) (Nonmuscle| myosin heavy chain IIc) (NMHC II-C) Length = 1995 Score = 30.0 bits (66), Expect = 4.8 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +3 Query: 420 RIGSDVQISPEK-LREEQAAVKAQAAFRGYLARRAFR 527 R G Q+ E+ L+ V QAA RGYLARRAF+ Sbjct: 788 RAGVLAQLEEERDLKVTDIIVSFQAAARGYLARRAFQ 824
>MYH14_MOUSE (Q6URW6) Myosin-14 (Myosin heavy chain, nonmuscle IIc) (Nonmuscle| myosin heavy chain IIc) (NMHC II-C) Length = 2000 Score = 30.0 bits (66), Expect = 4.8 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +3 Query: 420 RIGSDVQISPEK-LREEQAAVKAQAAFRGYLARRAFR 527 R G Q+ E+ L+ V QAA RGYLARRAF+ Sbjct: 792 RAGVLAQLEEERDLKVTDIIVSFQAAARGYLARRAFQ 828
>ASPM_SHEEP (P62297) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 3374 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = +3 Query: 438 QISPEKLREEQAAVKAQAAFRGYLARRAFRALK 536 ++ + +E +AAVK Q+AFR A++ FR LK Sbjct: 1808 KVRKQMRKEHEAAVKIQSAFRTARAQKEFRLLK 1840
>PLB3_CANAL (Q9UVX1) Lysophospholipase 3 precursor (EC 3.1.1.5) (Phospholipase| B 3) Length = 754 Score = 30.0 bits (66), Expect = 4.8 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%) Frame = -1 Query: 409 SIALPLGKLEISDAIPLLWELTSTGSEIRGELS-----ENSGSFPFPAFGKSFALTE 254 ++ L +G + IS A +W S+GS + S + G+FPF FG +LT+ Sbjct: 4 NLKLIIGSILISQA-QAIWPFDSSGSSSSSDSSPSETGSSGGTFPFDLFGSGSSLTQ 59
>ASPM_SAIBB (P62296) Abnormal spindle-like microcephaly-associated protein| homolog Length = 3469 Score = 29.6 bits (65), Expect = 6.2 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%) Frame = +3 Query: 459 REEQAAVKAQAAFRGYLARRAFRA-LKGIIRLQALIR 566 ++ AAVK Q+AFRGY R +++ L+ II++Q R Sbjct: 1814 QQSVAAVKIQSAFRGYSKRVKYQSVLQSIIKIQRWYR 1850
>INVS_MOUSE (O89019) Inversin (Inversion of embryo turning protein)| (Nephrocystin-2) Length = 1062 Score = 29.6 bits (65), Expect = 6.2 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +3 Query: 462 EEQAAVKAQAAFRGYLARRAFRALKGIIRLQALIR 566 ++ AA K QA ++GY R+AFR K ++ +R Sbjct: 555 QDIAAFKIQAVYKGYKVRKAFRDRKNLLMKHEQLR 589
>CP19A_ARATH (Q38900) Peptidyl-prolyl cis-trans isomerase CYP19-1 (EC 5.2.1.8)| (PPIase CYP19-1) (Rotamase cyclophilin-3) (Cyclophilin of 19 kDa 1) Length = 173 Score = 29.6 bits (65), Expect = 6.2 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = -2 Query: 144 YPPTAPTTAHGSRLHCRTERGGGRRSLPSYYLFCSVER 31 Y T P TA R C ERG G++ P +Y S R Sbjct: 26 YADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHR 63
>NUMB_MOUSE (Q9QZS3) Protein numb homolog (m-Numb) (m-Nb)| Length = 653 Score = 29.6 bits (65), Expect = 6.2 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +3 Query: 12 SLARTSSAPRYRTNSRRGAIFFRRPARSCNG 104 SLA+ + P+Y T+S + FF+ PA+ NG Sbjct: 557 SLAKQQTFPQYETSSATTSPFFKPPAQHLNG 587
>INVS_CANFA (Q6JAN1) Inversin (Inversion of embryo turning protein)| (Nephrocystin-2) Length = 1081 Score = 29.6 bits (65), Expect = 6.2 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +3 Query: 462 EEQAAVKAQAAFRGYLARRAFRALKGIIRLQALIR 566 ++ AA K QA ++GY R+AFR K ++ +R Sbjct: 555 QDIAAFKIQAVYKGYKVRKAFRDRKNLLMKHEQLR 589
>INVS_HUMAN (Q9Y283) Inversin (Inversion of embryo turning homolog)| (Nephrocystin-2) Length = 1065 Score = 29.6 bits (65), Expect = 6.2 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +3 Query: 462 EEQAAVKAQAAFRGYLARRAFRALKGIIRLQALIR 566 ++ AA K QA ++GY R+AFR K ++ +R Sbjct: 555 QDIAAFKIQAVYKGYKVRKAFRDRKNLLMKHEQLR 589
>GLNE_METCA (Q605D9) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 948 Score = 29.3 bits (64), Expect = 8.1 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 5/79 (6%) Frame = -3 Query: 296 LPVSSLRQILCLDGTGLG*FLSEDHRLNPLRRGLAHASLELLKRPKFWTFPIPLRRQPPL 117 LPVS R+ L G + HRL+ +RR + E++ P P P R +P L Sbjct: 400 LPVSEERRGLLAFSMGFESWEGFLHRLDEVRRRVHEIFTEVIAEP-----PQPARGEPLL 454 Query: 116 TG-----HASIAGPSGAAE 75 G ++AG GAAE Sbjct: 455 DGGEAELSQALAGFDGAAE 473
>ASPM_CANFA (P62286) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 3452 Score = 29.3 bits (64), Expect = 8.1 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = +3 Query: 459 REEQAAVKAQAAFRGYLARRAFRALK 536 RE QAAV+ Q+AFR A++ F+ LK Sbjct: 1888 RERQAAVRIQSAFRMAKAQKQFKLLK 1913
>ARGI_COCIM (P40906) Arginase (EC 3.5.3.1)| Length = 322 Score = 29.3 bits (64), Expect = 8.1 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = -1 Query: 373 DAIPLLWELTSTGSEIRGELSENSGSFPFPAFGKSFALTELDLVDFFPRITDL 215 DA+ W STG+ +RG L+ G F + ++ +L +DLV+ P + L Sbjct: 249 DALDPQWA-PSTGTPVRGGLTLREGDFIAESIHETGSLVAMDLVEVNPTLETL 300
>ASPM_SAGLB (P62295) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 1527 Score = 29.3 bits (64), Expect = 8.1 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%) Frame = +3 Query: 471 AAVKAQAAFRGYLARRAFRA-LKGIIRLQALIR 566 AAVK Q+AFRGY R +++ L+ II++Q R Sbjct: 420 AAVKIQSAFRGYSKRVRYQSVLQSIIKIQRWYR 452
>ASPM_AOTVO (P62283) Abnormal spindle-like microcephaly-associated protein| homolog Length = 3473 Score = 29.3 bits (64), Expect = 8.1 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%) Frame = +3 Query: 471 AAVKAQAAFRGYLARRAFRA-LKGIIRLQALIR 566 AAVK Q+AFRGY R +++ L+ II++Q R Sbjct: 1823 AAVKIQSAFRGYRKRVKYQSVLQSIIKIQRWYR 1855 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,626,807 Number of Sequences: 219361 Number of extensions: 1963972 Number of successful extensions: 6329 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 5954 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6327 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
