ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27f23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK120664.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 4e-20
2dbj|AK098920.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 4e-20
3dbj|AK062106.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 4e-20
4gb|AY596619.1| Saccharum officinarum clone SCEZLB1008G11, comple... 82 2e-12
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
6dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
7gb|AY107679.1| Zea mays PCO108448 mRNA sequence 66 1e-07
8gb|AY103987.1| Zea mays PCO109505 mRNA sequence 46 0.13
9gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 44 0.49
10gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 44 0.49
11emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 44 0.49
12gb|AC104414.8| Mus musculus chromosome 3, clone RP23-99I7, compl... 42 2.0
13gb|AC133508.3| Mus musculus BAC clone RP23-383K24 from chromosom... 42 2.0
14ref|XM_985031.1| PREDICTED: Mus musculus SH3 domain protein D19,... 42 2.0
15ref|XM_979207.1| PREDICTED: Mus musculus SH3 domain protein D19,... 42 2.0
16ref|XM_994427.1| PREDICTED: Mus musculus SH3 domain protein D19,... 42 2.0
17emb|AL445064.1|TACID2 Thermoplasma acidophilum complete genome; ... 42 2.0
18dbj|AK222400.1| Ciona intestinalis mRNA for zinc finger protein,... 42 2.0
19gb|AE009571.1| Brucella melitensis 16M chromosome I, section 128... 42 2.0
20ref|XM_215597.3| PREDICTED: Rattus norvegicus similar to SH3 dom... 42 2.0
21gb|U28682.1|HIV1U28682 Human immunodeficiency virus type 1 isola... 42 2.0
22dbj|D89677.2| Mus musculus SH3d19 mRNA for SH3 domain protein D1... 42 2.0
23gb|BC051289.1| Homo sapiens ubiquitin-conjugating enzyme E2I (UB... 40 7.7
24ref|NM_003345.3| Homo sapiens ubiquitin-conjugating enzyme E2I (... 40 7.7
25ref|NM_194259.1| Homo sapiens ubiquitin-conjugating enzyme E2I (... 40 7.7
26ref|NM_207308.1| Homo sapiens nucleoporin 210kDa-like (NUP210L),... 40 7.7
27gb|BC002345.1| Homo sapiens cDNA clone IMAGE:2961349, **** WARNI... 40 7.7
28gb|AC127355.4| Mus musculus BAC clone RP23-96F6 from chromosome ... 40 7.7
29gb|AC113019.13| Mus musculus chromosome 7, clone RP23-185A21, co... 40 7.7
30emb|X67506.1|CTANCA C.thermocellum ancA gene 40 7.7
31emb|AL590447.1|CNS07EGE chromosome VII of strain GB-M1 of Enceph... 40 7.7
32emb|AL592080.26| Mouse DNA sequence from clone RP23-102H10 on ch... 40 7.7
33gb|AC120498.2| Homo sapiens chromosome 16 clone RP11-616M22, com... 40 7.7
34dbj|AK128108.1| Homo sapiens cDNA FLJ46229 fis, clone TESTI40149... 40 7.7
35dbj|AK125924.1| Homo sapiens cDNA FLJ43936 fis, clone TESTI40138... 40 7.7
36dbj|AK093616.1| Homo sapiens cDNA FLJ36297 fis, clone THYMU20043... 40 7.7
37dbj|AB226032.1| Aspergillus oryzae cDNA, contig sequence: AoEST2888 40 7.7
38dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 7.7
39gb|AC093925.5| Genomic sequence for Mus musculus, clone RP23-304... 40 7.7
40gb|AF396701.1|AF396700S2 Mus musculus Hermansky-Pudlak syndrome ... 40 7.7
41ref|XM_944215.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 7.7
42gb|U45328.1|HSU45328 Human ubiquitin-conjugating enzyme (UBE2I) ... 40 7.7
43dbj|AB182370.1| Escherichia coli plasmid R388 DNA, 13.46 kb SspI... 40 7.7
44emb|AJ329262.1|HSA329262 Homo sapiens genomic sequence surroundi... 40 7.7
45gb|AY106832.1| Zea mays PCO074808 mRNA sequence 40 7.7
46gb|AC079442.24| Mus musculus strain C57BL/6J chromosome 3 clone ... 40 7.7
47gb|AC113075.9| Mus musculus chromosome 19, clone RP23-278F24, co... 40 7.7
48gb|U66818.1|HSU66818 Human ubiquitin conjugating enzyme 9 (hUBC9... 40 7.7
49gb|U31882.1|HSU31882 Human ubiquitin-conjugating enzyme 9 mRNA, ... 40 7.7
50gb|AC125063.4| Mus musculus BAC clone RP23-425N17 from 5, comple... 40 7.7
51tpd|BR000038.1| TPA: TPA_inf: Escherichia coli plasmid R388 DNA,... 40 7.7
52gb|U38785.1|HSU38785 Human RAD6 homolog mRNA, complete cds 40 7.7
53gb|U31933.1|HSU31933 Human ubiquitin conjugating enzyme homolog ... 40 7.7
54emb|AL031711.30|HS333E1 Human DNA sequence from clone LA16-333E1... 40 7.7
55gb|AY823670.1| Mus musculus 2010007H12Rik (2010007H12Rik), BIPL1... 40 7.7
56gb|AC113434.34| Mus musculus strain C57BL/6J clone rp23-456n12 m... 40 7.7
57emb|AJ002385.1|HSUBC9 Homo sapiens mRNA for ubiquitin-conjugatin... 40 7.7
58emb|X96427.1|HSUBC9ENZ H.sapiens mRNA for ubiquitin conjugating ... 40 7.7
59emb|AL833964.1|HSM805191 Homo sapiens mRNA; cDNA DKFZp434C1323 (... 40 7.7
60dbj|D45050.1|HUMVBICE Human mRNA for ubiquitin conjugating enzyme 40 7.7 
>dbj|AK120664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159J10, full
            insert sequence
          Length = 2641

 Score =  107 bits (54), Expect = 4e-20
 Identities = 108/126 (85%)
 Strand = Plus / Plus

                                                                        
Query: 443  tagtcccgagaaactgagagaagaacaagcagcagtgaaggcgcaagcggcttttcgagg 502
            |||||| |||||||| || ||||| | ||| ||||||||||| |||||||| || |||||
Sbjct: 886  tagtccagagaaactaagcgaagagctagctgcagtgaaggcacaagcggccttccgagg 945

                                                                        
Query: 503  ttacctggcacgcagggcctttcgcgcattgaaaggcatcatcagacttcaggcactgat 562
            |||||||||||| ||||| || || ||||| ||||| ||||| ||||| |||||||||||
Sbjct: 946  ttacctggcacgtagggcattccgtgcattaaaaggtatcataagactccaggcactgat 1005

                  
Query: 563  tcgagg 568
             |||||
Sbjct: 1006 ccgagg 1011



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                       
Query: 188 catgggcaagtccccggcgaagtggattaagtcggtgatcctcggaaagaaatcaaccaa 247
           |||||| ||||| |||||||||||||| ||||| ||| ||||||| ||||||||| ||||
Sbjct: 226 catggggaagtctccggcgaagtggatcaagtctgtgctcctcgggaagaaatcagccaa 285

                
Query: 248 gtcca 252
           |||||
Sbjct: 286 gtcca 290
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>dbj|AK098920.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N06, full
           insert sequence
          Length = 2040

 Score =  107 bits (54), Expect = 4e-20
 Identities = 108/126 (85%)
 Strand = Plus / Plus

                                                                       
Query: 443 tagtcccgagaaactgagagaagaacaagcagcagtgaaggcgcaagcggcttttcgagg 502
           |||||| |||||||| || ||||| | ||| ||||||||||| |||||||| || |||||
Sbjct: 414 tagtccagagaaactaagcgaagagctagctgcagtgaaggcacaagcggccttccgagg 473

                                                                       
Query: 503 ttacctggcacgcagggcctttcgcgcattgaaaggcatcatcagacttcaggcactgat 562
           |||||||||||| ||||| || || ||||| ||||| ||||| ||||| |||||||||||
Sbjct: 474 ttacctggcacgtagggcattccgtgcattaaaaggtatcataagactccaggcactgat 533

                 
Query: 563 tcgagg 568
            |||||
Sbjct: 534 ccgagg 539



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 84/98 (85%)
 Strand = Plus / Plus

                                                                       
Query: 188 catgggcaagtccccggcgaagtggattaagtcggtgatcctcggaaagaaatcaaccaa 247
           |||||| ||||| |||||||||||||| ||||| ||| ||||||| ||||||||| ||||
Sbjct: 144 catggggaagtctccggcgaagtggatcaagtctgtgctcctcgggaagaaatcagccaa 203

                                                 
Query: 248 gtccagttccgtcaaggcaaaggatttgccgaaggctg 285
           |||||  ||   |||||| ||||||||| |||||||||
Sbjct: 204 gtccaactctaccaaggccaaggatttggcgaaggctg 241
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>dbj|AK062106.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B02, full
           insert sequence
          Length = 2099

 Score =  107 bits (54), Expect = 4e-20
 Identities = 108/126 (85%)
 Strand = Plus / Plus

                                                                       
Query: 443 tagtcccgagaaactgagagaagaacaagcagcagtgaaggcgcaagcggcttttcgagg 502
           |||||| |||||||| || ||||| | ||| ||||||||||| |||||||| || |||||
Sbjct: 472 tagtccagagaaactaagcgaagagctagctgcagtgaaggcacaagcggccttccgagg 531

                                                                       
Query: 503 ttacctggcacgcagggcctttcgcgcattgaaaggcatcatcagacttcaggcactgat 562
           |||||||||||| ||||| || || ||||| ||||| ||||| ||||| |||||||||||
Sbjct: 532 ttacctggcacgtagggcattccgtgcattaaaaggtatcataagactccaggcactgat 591

                 
Query: 563 tcgagg 568
            |||||
Sbjct: 592 ccgagg 597



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 84/98 (85%)
 Strand = Plus / Plus

                                                                       
Query: 188 catgggcaagtccccggcgaagtggattaagtcggtgatcctcggaaagaaatcaaccaa 247
           |||||| ||||| |||||||||||||| ||||| ||| ||||||| ||||||||| ||||
Sbjct: 202 catggggaagtctccggcgaagtggatcaagtctgtgctcctcgggaagaaatcagccaa 261

                                                 
Query: 248 gtccagttccgtcaaggcaaaggatttgccgaaggctg 285
           |||||  ||   |||||| ||||||||| |||||||||
Sbjct: 262 gtccaactctaccaaggccaaggatttggcgaaggctg 299
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>gb|AY596619.1| Saccharum officinarum clone SCEZLB1008G11, complete sequence
          Length = 2293

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 92/109 (84%)
 Strand = Plus / Minus

                                                                        
Query: 460  gagaagaacaagcagcagtgaaggcgcaagcggcttttcgaggttacctggcacgcaggg 519
            ||||||| ||||| ||||  ||||| || || || ||||| |||||||||||||| ||| 
Sbjct: 1684 gagaagatcaagctgcagcaaaggcacaggcagcctttcgtggttacctggcacgaaggt 1625

                                                             
Query: 520  cctttcgcgcattgaaaggcatcatcagacttcaggcactgattcgagg 568
            | || ||  |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 1624 cattccgtacattaaaaggcatcataagacttcaggcactgattcgagg 1576
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                            
Query: 188      catgggcaagtccccggcgaagtggattaagtcggtgatcctcggaaagaaatcaaccaa 247
                |||||| ||||| |||||||||||||| ||||| ||| ||||||| ||||||||| ||||
Sbjct: 29799465 catggggaagtctccggcgaagtggatcaagtctgtgctcctcgggaagaaatcagccaa 29799406

                     
Query: 248      gtcca 252
                |||||
Sbjct: 29799405 gtcca 29799401



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                            
Query: 443      tagtcccgagaaactgagagaagaacaagcagcagtgaaggcgcaagcggcttttcgagg 502
                |||||| |||||||| || ||||| | ||| ||||||||||| |||||||| || |||||
Sbjct: 29798805 tagtccagagaaactaagcgaagagctagctgcagtgaaggcacaagcggccttccgagg 29798746

                        
Query: 503      ttacctgg 510
                ||||||||
Sbjct: 29798745 ttacctgg 29798738



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                            
Query: 509      ggcacgcagggcctttcgcgcattgaaaggcatcatcagacttcaggcactgattcgagg 568
                |||||| ||||| || || ||||| ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 29798372 ggcacgtagggcattccgtgcattaaaaggtatcataagactccaggcactgatccgagg 29798313
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>dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0683B11
          Length = 155955

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                         
Query: 188   catgggcaagtccccggcgaagtggattaagtcggtgatcctcggaaagaaatcaaccaa 247
             |||||| ||||| |||||||||||||| ||||| ||| ||||||| ||||||||| ||||
Sbjct: 43560 catggggaagtctccggcgaagtggatcaagtctgtgctcctcgggaagaaatcagccaa 43501

                  
Query: 248   gtcca 252
             |||||
Sbjct: 43500 gtcca 43496



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                         
Query: 443   tagtcccgagaaactgagagaagaacaagcagcagtgaaggcgcaagcggcttttcgagg 502
             |||||| |||||||| || ||||| | ||| ||||||||||| |||||||| || |||||
Sbjct: 42900 tagtccagagaaactaagcgaagagctagctgcagtgaaggcacaagcggccttccgagg 42841

                     
Query: 503   ttacctgg 510
             ||||||||
Sbjct: 42840 ttacctgg 42833



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                         
Query: 509   ggcacgcagggcctttcgcgcattgaaaggcatcatcagacttcaggcactgattcgagg 568
             |||||| ||||| || || ||||| ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 42467 ggcacgtagggcattccgtgcattaaaaggtatcataagactccaggcactgatccgagg 42408
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>gb|AY107679.1| Zea mays PCO108448 mRNA sequence
          Length = 1549

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 90/109 (82%)
 Strand = Plus / Plus

                                                                       
Query: 460 gagaagaacaagcagcagtgaaggcgcaagcggcttttcgaggttacctggcacgcaggg 519
           ||||||| ||||| |||| |||||| || || || ||||| |||||||||||||| ||| 
Sbjct: 511 gagaagatcaagctgcagcgaaggcacaggcagcctttcgtggttacctggcacgaaggt 570

                                                            
Query: 520 cctttcgcgcattgaaaggcatcatcagacttcaggcactgattcgagg 568
           | || || ||||| ||||| ||| | ||||| ||||| |||||||||||
Sbjct: 571 cattccgtgcattaaaaggtatcgtaagactccaggcgctgattcgagg 619



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 189 atgggcaagtccccggcgaagtggattaagtcggtgatcctcggaaagaaatcaaccaag 248
           ||||||||||| |||| ||||||||| || |||||| |  | || |||||||| ||||||
Sbjct: 216 atgggcaagtcgccggggaagtggatcaaatcggtgcttttggggaagaaatctaccaag 275

             
Query: 249 tc 250
           ||
Sbjct: 276 tc 277
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>gb|AY103987.1| Zea mays PCO109505 mRNA sequence
          Length = 1714

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 325 tgatctccgagccggtacttgttagctcccacaacaatg 363
           ||||||| ||||| || ||||||||| ||||||||||||
Sbjct: 413 tgatctcggagcctgtgcttgttagcgcccacaacaatg 451



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 189 atgggcaagtccccggcgaagtggattaagtcggtgatcctcggaaagaa 238
           ||||| ||||| |||||||||||||| ||||| ||| || |||| |||||
Sbjct: 253 atggggaagtctccggcgaagtggatcaagtccgtgctcttcgggaagaa 302
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>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 477    gtgaaggcgcaagcggcttttc 498
              ||||||||||||||||||||||
Sbjct: 606114 gtgaaggcgcaagcggcttttc 606093
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>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 477    gtgaaggcgcaagcggcttttc 498
              ||||||||||||||||||||||
Sbjct: 627611 gtgaaggcgcaagcggcttttc 627590
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>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence,
              strain 2308
          Length = 2121359

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 477    gtgaaggcgcaagcggcttttc 498
              ||||||||||||||||||||||
Sbjct: 623908 gtgaaggcgcaagcggcttttc 623887
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>gb|AC104414.8| Mus musculus chromosome 3, clone RP23-99I7, complete sequence
          Length = 212613

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 233   aaagaaatcaaccaagtccag 253
             |||||||||||||||||||||
Sbjct: 22002 aaagaaatcaaccaagtccag 22022
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>gb|AC133508.3| Mus musculus BAC clone RP23-383K24 from chromosome 3, complete sequence
          Length = 192136

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 233   aaagaaatcaaccaagtccag 253
             |||||||||||||||||||||
Sbjct: 80236 aaagaaatcaaccaagtccag 80216
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>ref|XM_985031.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant
           2 (Sh3d19), mRNA
          Length = 6826

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 233 aaagaaatcaaccaagtccag 253
           |||||||||||||||||||||
Sbjct: 275 aaagaaatcaaccaagtccag 295
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>ref|XM_979207.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant
           3 (Sh3d19), mRNA
          Length = 6822

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 233 aaagaaatcaaccaagtccag 253
           |||||||||||||||||||||
Sbjct: 275 aaagaaatcaaccaagtccag 295
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>ref|XM_994427.1| PREDICTED: Mus musculus SH3 domain protein D19, transcript variant
           2 (Sh3d19), mRNA
          Length = 6826

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 233 aaagaaatcaaccaagtccag 253
           |||||||||||||||||||||
Sbjct: 275 aaagaaatcaaccaagtccag 295
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>emb|AL445064.1|TACID2 Thermoplasma acidophilum complete genome; segment 2/5
          Length = 338100

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 278    gaaggctggaaacgggaagga 298
              |||||||||||||||||||||
Sbjct: 261855 gaaggctggaaacgggaagga 261835
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>dbj|AK222400.1| Ciona intestinalis mRNA for zinc finger protein, complete cds,
           clone: cidg844n13
          Length = 2249

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 301 ctgaattctctgataattctc 321
           |||||||||||||||||||||
Sbjct: 950 ctgaattctctgataattctc 930
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>gb|AE009571.1| Brucella melitensis 16M chromosome I, section 128 of 195 of the
            complete sequence
          Length = 13507

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 478  tgaaggcgcaagcggcttttc 498
            |||||||||||||||||||||
Sbjct: 3075 tgaaggcgcaagcggcttttc 3095
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>ref|XM_215597.3| PREDICTED: Rattus norvegicus similar to SH3 domain protein D19
           (predicted) (LOC295171), mRNA
          Length = 3852

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 233 aaagaaatcaaccaagtccag 253
           |||||||||||||||||||||
Sbjct: 919 aaagaaatcaaccaagtccag 939
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>gb|U28682.1|HIV1U28682 Human immunodeficiency virus type 1 isolate HO48-1 envelope
           glycoprotein (env) gene, C2-C4 region, partial cds
          Length = 384

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 41  ctacagaacaaatagtaggag 61
           |||||||||||||||||||||
Sbjct: 248 ctacagaacaaatagtaggag 268
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>dbj|D89677.2| Mus musculus SH3d19 mRNA for SH3 domain protein D19, complete cds
          Length = 4937

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 233 aaagaaatcaaccaagtccag 253
           |||||||||||||||||||||
Sbjct: 272 aaagaaatcaaccaagtccag 292
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>gb|BC051289.1| Homo sapiens ubiquitin-conjugating enzyme E2I (UBC9 homolog,
          yeast), transcript variant 1, mRNA (cDNA clone
          MGC:59833 IMAGE:2824300), complete cds
          Length = 1151

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 ccgccgccccgctcggtcct 96
          ||||||||||||||||||||
Sbjct: 21 ccgccgccccgctcggtcct 40
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>ref|NM_003345.3| Homo sapiens ubiquitin-conjugating enzyme E2I (UBC9 homolog,
          yeast) (UBE2I), transcript variant 1, mRNA
          Length = 1221

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 ccgccgccccgctcggtcct 96
          ||||||||||||||||||||
Sbjct: 77 ccgccgccccgctcggtcct 96
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>ref|NM_194259.1| Homo sapiens ubiquitin-conjugating enzyme E2I (UBC9 homolog,
          yeast) (UBE2I), transcript variant 2, mRNA
          Length = 1478

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 ccgccgccccgctcggtcct 96
          ||||||||||||||||||||
Sbjct: 77 ccgccgccccgctcggtcct 96
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>ref|NM_207308.1| Homo sapiens nucleoporin 210kDa-like (NUP210L), mRNA
          Length = 5150

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 374  agaaatttccaacttgccca 393
            ||||||||||||||||||||
Sbjct: 1977 agaaatttccaacttgccca 1996
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>gb|BC002345.1| Homo sapiens cDNA clone IMAGE:2961349, **** WARNING: chimeric clone
            ****
          Length = 2819

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 77   ccgccgccccgctcggtcct 96
            ||||||||||||||||||||
Sbjct: 1669 ccgccgccccgctcggtcct 1688
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>gb|AC127355.4| Mus musculus BAC clone RP23-96F6 from chromosome 7, complete sequence
          Length = 150343

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  agttctaggctagcatgggc 194
            ||||||||||||||||||||
Sbjct: 6941 agttctaggctagcatgggc 6960
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>gb|AC113019.13| Mus musculus chromosome 7, clone RP23-185A21, complete sequence
          Length = 215975

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 175  agttctaggctagcatgggc 194
            ||||||||||||||||||||
Sbjct: 7304 agttctaggctagcatgggc 7285
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>emb|X67506.1|CTANCA C.thermocellum ancA gene
          Length = 9480

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 382  ccaacttgcccaatgggagc 401
            ||||||||||||||||||||
Sbjct: 7532 ccaacttgcccaatgggagc 7513
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>emb|AL590447.1|CNS07EGE chromosome VII of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 226576

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   gaaggagcctgaattctctg 312
             ||||||||||||||||||||
Sbjct: 42165 gaaggagcctgaattctctg 42184
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>emb|AL592080.26| Mouse DNA sequence from clone RP23-102H10 on chromosome 11 Contains a
              endothelial differentiation-related factor 1 (Edf1)
              pseudogene, the 3' end of the gene for a novel protein
              similar to human sperm antigen HCMOGT-1 (B230396K10Rik) and
              a CpG island, complete sequence
          Length = 216023

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 403    caatggaaaacatggttaga 422
              ||||||||||||||||||||
Sbjct: 102853 caatggaaaacatggttaga 102872
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>gb|AC120498.2| Homo sapiens chromosome 16 clone RP11-616M22, complete sequence
          Length = 195680

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     ccgccgccccgctcggtcct 96
              ||||||||||||||||||||
Sbjct: 188642 ccgccgccccgctcggtcct 188661
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>dbj|AK128108.1| Homo sapiens cDNA FLJ46229 fis, clone TESTI4014932, weakly  similar
            to Integral membrane glycoprotein gp210 precursor
          Length = 4459

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 374  agaaatttccaacttgccca 393
            ||||||||||||||||||||
Sbjct: 1294 agaaatttccaacttgccca 1313
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>dbj|AK125924.1| Homo sapiens cDNA FLJ43936 fis, clone TESTI4013830, weakly  similar
            to Integral membrane glycoprotein gp210 precursor
          Length = 5150

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 374  agaaatttccaacttgccca 393
            ||||||||||||||||||||
Sbjct: 1977 agaaatttccaacttgccca 1996
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>dbj|AK093616.1| Homo sapiens cDNA FLJ36297 fis, clone THYMU2004336, highly
          similar to UBIQUITIN-CONJUGATING ENZYME E2-18 KDA (EC
          6.3.2.19)
          Length = 1711

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 ccgccgccccgctcggtcct 96
          ||||||||||||||||||||
Sbjct: 18 ccgccgccccgctcggtcct 37
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>dbj|AB226032.1| Aspergillus oryzae cDNA, contig sequence: AoEST2888
          Length = 1325

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 462 gaagaacaagcagcagtgaa 481
           ||||||||||||||||||||
Sbjct: 620 gaagaacaagcagcagtgaa 601
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 462     gaagaacaagcagcagtgaa 481
               ||||||||||||||||||||
Sbjct: 4388690 gaagaacaagcagcagtgaa 4388671
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>gb|AC093925.5| Genomic sequence for Mus musculus, clone RP23-304H5, complete sequence
          Length = 227242

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   tagcatgggcaagtccccgg 204
             ||||||||||||||||||||
Sbjct: 78355 tagcatgggcaagtccccgg 78336
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>gb|AF396701.1|AF396700S2 Mus musculus Hermansky-Pudlak syndrome type-3 protein (Hps3) gene,
            exons 2 through 11
          Length = 21110

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  agttctaggctagcatgggc 194
            ||||||||||||||||||||
Sbjct: 5046 agttctaggctagcatgggc 5065
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>ref|XM_944215.1| PREDICTED: Homo sapiens hypothetical protein LOC650482 (LOC650482),
           mRNA
          Length = 444

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 77  ccgccgccccgctcggtcct 96
           ||||||||||||||||||||
Sbjct: 155 ccgccgccccgctcggtcct 174
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>gb|U45328.1|HSU45328 Human ubiquitin-conjugating enzyme (UBE2I) mRNA, complete cds
          Length = 1203

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 ccgccgccccgctcggtcct 96
          ||||||||||||||||||||
Sbjct: 52 ccgccgccccgctcggtcct 71
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>dbj|AB182370.1| Escherichia coli plasmid R388 DNA, 13.46 kb SspI-BamHI fragment
          Length = 13459

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 263  ggcaaaggatttgccgaagg 282
            ||||||||||||||||||||
Sbjct: 5659 ggcaaaggatttgccgaagg 5678
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>emb|AJ329262.1|HSA329262 Homo sapiens genomic sequence surrounding NotI site, clone
          NL4-AE17R
          Length = 711

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 77 ccgccgccccgctcggtcct 96
          ||||||||||||||||||||
Sbjct: 56 ccgccgccccgctcggtcct 37
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>gb|AY106832.1| Zea mays PCO074808 mRNA sequence
          Length = 1378

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gcacgaggctctctctcgcc 20
          ||||||||||||||||||||
Sbjct: 1  gcacgaggctctctctcgcc 20
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>gb|AC079442.24| Mus musculus strain C57BL/6J chromosome 3 clone rp23-379f4, complete
             sequence
          Length = 196996

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   agttctaggctagcatgggc 194
             ||||||||||||||||||||
Sbjct: 61053 agttctaggctagcatgggc 61072
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>gb|AC113075.9| Mus musculus chromosome 19, clone RP23-278F24, complete sequence
          Length = 171837

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 165  gcgtttgagcagttctaggc 184
            ||||||||||||||||||||
Sbjct: 5555 gcgtttgagcagttctaggc 5574
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>gb|U66818.1|HSU66818 Human ubiquitin conjugating enzyme 9 (hUBC9) mRNA, complete cds
          Length = 1137

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 ccgccgccccgctcggtcct 96
          ||||||||||||||||||||
Sbjct: 15 ccgccgccccgctcggtcct 34
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>gb|U31882.1|HSU31882 Human ubiquitin-conjugating enzyme 9 mRNA, complete cds
          Length = 1115

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 ccgccgccccgctcggtcct 96
          ||||||||||||||||||||
Sbjct: 22 ccgccgccccgctcggtcct 41
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>gb|AC125063.4| Mus musculus BAC clone RP23-425N17 from 5, complete sequence
          Length = 194931

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   agttctaggctagcatgggc 194
             ||||||||||||||||||||
Sbjct: 66281 agttctaggctagcatgggc 66262
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>tpd|BR000038.1| TPA: TPA_inf: Escherichia coli plasmid R388 DNA, complete sequence
          Length = 33913

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   ggcaaaggatttgccgaagg 282
             ||||||||||||||||||||
Sbjct: 21735 ggcaaaggatttgccgaagg 21754
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>gb|U38785.1|HSU38785 Human RAD6 homolog mRNA, complete cds
          Length = 1093

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 ccgccgccccgctcggtcct 96
          ||||||||||||||||||||
Sbjct: 21 ccgccgccccgctcggtcct 40
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>gb|U31933.1|HSU31933 Human ubiquitin conjugating enzyme homolog mRNA, complete cds
          Length = 1171

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 ccgccgccccgctcggtcct 96
          ||||||||||||||||||||
Sbjct: 47 ccgccgccccgctcggtcct 66
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>emb|AL031711.30|HS333E1 Human DNA sequence from clone LA16-333E1 on chromosome 16, complete
             sequence
          Length = 39943

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    ccgccgccccgctcggtcct 96
             ||||||||||||||||||||
Sbjct: 38261 ccgccgccccgctcggtcct 38280
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>gb|AY823670.1| Mus musculus 2010007H12Rik (2010007H12Rik), BIPL1 (Bipl1), ZCWPW1
             (Zcwpw1), and PILRA (Pilra) genes, complete cds; PILRP5
             (Pilrp5) pseudogene, complete sequence; PILRB (Pilrb)
             gene, complete cds; PILRP4 (Pilrp4) pseudogene, complete
             sequence; PILRB2 (Pilrb2) gene, complete cds; PILRP3
             (Pilrp3), PILRP2 (Pilrp2), and PILRP1 (Pilrp1)
             pseudogenes, complete sequence; and CYP3A13 (Cyp3a13) and
             GJE1 (Gje1) genes, complete cds
          Length = 194414

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   agttctaggctagcatgggc 194
             ||||||||||||||||||||
Sbjct: 46731 agttctaggctagcatgggc 46750
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>gb|AC113434.34| Mus musculus strain C57BL/6J clone rp23-456n12 map 5, complete sequence
          Length = 203821

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   agttctaggctagcatgggc 194
             ||||||||||||||||||||
Sbjct: 93968 agttctaggctagcatgggc 93949
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>emb|AJ002385.1|HSUBC9 Homo sapiens mRNA for ubiquitin-conjugating enzyme UBC9
          Length = 1116

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 ccgccgccccgctcggtcct 96
          ||||||||||||||||||||
Sbjct: 7  ccgccgccccgctcggtcct 26
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>emb|X96427.1|HSUBC9ENZ H.sapiens mRNA for ubiquitin conjugating enzyme type UBC9
          Length = 1163

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 ccgccgccccgctcggtcct 96
          ||||||||||||||||||||
Sbjct: 52 ccgccgccccgctcggtcct 71
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>emb|AL833964.1|HSM805191 Homo sapiens mRNA; cDNA DKFZp434C1323 (from clone DKFZp434C1323)
          Length = 3471

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 374 agaaatttccaacttgccca 393
           ||||||||||||||||||||
Sbjct: 223 agaaatttccaacttgccca 242
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>dbj|D45050.1|HUMVBICE Human mRNA for ubiquitin conjugating enzyme
          Length = 1148

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 ccgccgccccgctcggtcct 96
          ||||||||||||||||||||
Sbjct: 46 ccgccgccccgctcggtcct 65


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,024,864
Number of Sequences: 3902068
Number of extensions: 4024864
Number of successful extensions: 106078
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105868
Number of HSP's gapped (non-prelim): 210
length of query: 568
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 545
effective length of database: 17,143,297,704
effective search space: 9343097248680
effective search space used: 9343097248680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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