ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27f13 |
|---|---|
| Clone Library Name | barley_pub |
>Y3432_MYCBO (P59986) Hypothetical protein Mb3432| Length = 348 Score = 33.1 bits (74), Expect = 0.40 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +3 Query: 327 GMDTRPYRLSWPRMSIVYDVSPGRIFSTAAQQLRGAGAK 443 G+DTR YRL WP ++VY++ + + L A+ Sbjct: 151 GLDTRAYRLPWPPGTVVYEIDQPAVIKFKTRALANLNAE 189
>Y3399_MYCTU (Q50726) Hypothetical protein Rv3399/MT3507| Length = 348 Score = 33.1 bits (74), Expect = 0.40 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +3 Query: 327 GMDTRPYRLSWPRMSIVYDVSPGRIFSTAAQQLRGAGAK 443 G+DTR YRL WP ++VY++ + + L A+ Sbjct: 151 GLDTRAYRLPWPPGTVVYEIDQPAVIKFKTRALANLNAE 189
>SPT6H_DROME (Q9W420) Transcription elongation factor SPT6| Length = 1831 Score = 30.4 bits (67), Expect = 2.6 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Frame = +1 Query: 130 AAAVVAYPLFID-PYAAVLLSLDVAHQASESLVSPLMPSADHYRLTTRYLDEKLQHLISR 306 A V+A+P F + YA V+ L A Q E + P S DH T + D+ QH+ R Sbjct: 1331 ARRVIAHPSFFNKSYAEVVAMLAEADQ-GEVALRPSSKSKDHLTATWKVADDIFQHIDVR 1389 Query: 307 SD 312 + Sbjct: 1390 EE 1391
>EX7L_SHEON (Q8EC50) Probable exodeoxyribonuclease VII large subunit (EC| 3.1.11.6) (Exonuclease VII large subunit) Length = 445 Score = 30.0 bits (66), Expect = 3.3 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Frame = +1 Query: 175 AVLLSLDVAHQASE--SLVSPLMPSADHYRLTTRYLDEKLQHLISRSD---NFRQMEWTL 339 A LLS D +++ ++++ L SA HY+L L+H + R D +Q E Sbjct: 259 AELLSQDSDNKSQRLATVLARLKQSASHYQLKQERRLSLLEHRLQRLDPKRTLQQFEQRF 318 Query: 340 VHIGLAGQGCLSCTMYHLEESSVQQPSNSEEQEQKYR 450 + L + L+ ++ L Q S E+Q K++ Sbjct: 319 DEMQLRLEAALTNKLHGLSRRQQQLASRLEQQSPKHK 355
>PDYN_RAT (P06300) Beta-neoendorphin-dynorphin precursor (Proenkephalin B)| (Preprodynorphin) [Contains: Alpha-neoendorphin; Dynorphin A; Leu-enkephalin; Dynorphin B] Length = 248 Score = 29.6 bits (65), Expect = 4.4 Identities = 23/90 (25%), Positives = 40/90 (44%) Frame = +1 Query: 184 LSLDVAHQASESLVSPLMPSADHYRLTTRYLDEKLQHLISRSDNFRQMEWTLVHIGLAGQ 363 ++L+ + A L+ PL+ + +L T +EKL+ L SR N R+ E L+ L Sbjct: 87 VALEEGYTALTKLLEPLLKELEKGQLLTSVSEEKLRGLSSRFGNGRESE--LLGTDLMND 144 Query: 364 GCLSCTMYHLEESSVQQPSNSEEQEQKYRG 453 H E ++ +Q ++Y G Sbjct: 145 EAAQAGTLHFNEEDLR------KQAKRYGG 168
>CT072_HUMAN (Q9BQP7) Protein C20orf72| Length = 344 Score = 29.6 bits (65), Expect = 4.4 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Frame = +1 Query: 202 HQASESLVSP--LMPSADHYRLTTRYLDEKLQHLISRSDNFRQMEWTLVHIGLAGQGCLS 375 H+A ES++SP + D L + Y+ E +QH++ R +E + H L G L Sbjct: 180 HEALESILSPQETLKERDENLLKSGYI-ESVQHILKDVSGVRALESAVQHETLNYIGLLD 238 Query: 376 CTMYHLEESSVQQPSNSEEQEQKYRGT 456 C + + V SE+ + + T Sbjct: 239 CVAEYQGKLCVIDWKTSEKPKPFIQST 265
>DPP4_HUMAN (P27487) Dipeptidyl peptidase 4 (EC 3.4.14.5) (Dipeptidyl peptidase| IV) (DPP IV) (T-cell activation antigen CD26) (TP103) (Adenosine deaminase complexing protein 2) (ADABP) [Contains: Dipeptidyl peptidase 4 membrane form (Dipeptidyl peptidase Length = 766 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = +1 Query: 247 DHYRLTTRYLDEKLQHLISRSDNFRQMEWTLVH 345 DHYR +T ++SR++NF+Q+E+ L+H Sbjct: 681 DHYRNST---------VMSRAENFKQVEYLLIH 704
>NIFH_CHLTE (Q8KC92) Nitrogenase iron protein (EC 1.18.6.1) (Nitrogenase| component II) (Nitrogenase Fe protein) (Nitrogenase reductase) Length = 274 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = +1 Query: 229 PLMPSADHYRLTTRYLDEKLQHLISRSDNFRQMEWTLVHIGLA 357 P P AD YR + +DE +I + ++E L+ G+A Sbjct: 231 PTHPQADEYRALAKKIDENKMFVIPKPLEIDELESLLIEFGIA 273
>DPP4_RAT (P14740) Dipeptidyl peptidase 4 (EC 3.4.14.5) (Dipeptidyl peptidase| IV) (DPP IV) (T-cell activation antigen CD26) (GP110 glycoprotein) (Bile canaliculus domain-specific membrane glycoprotein) [Contains: Dipeptidyl peptidase 4 membrane form (Dipe Length = 767 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = +1 Query: 247 DHYRLTTRYLDEKLQHLISRSDNFRQMEWTLVH 345 DHYR +T ++SR++NF+Q+E+ L+H Sbjct: 682 DHYRNST---------VMSRAENFKQVEYLLIH 705
>STX5_HUMAN (Q13190) Syntaxin-5| Length = 301 Score = 28.9 bits (63), Expect = 7.5 Identities = 20/73 (27%), Positives = 36/73 (49%) Frame = +1 Query: 133 AAVVAYPLFIDPYAAVLLSLDVAHQASESLVSPLMPSADHYRLTTRYLDEKLQHLISRSD 312 A V A PL + + L AS+ + +M S +L + +DE+ ++ SR+D Sbjct: 160 APVSALPLAPNHLGGGAVVLGAESHASKDVAIDMMDSRTSQQL--QLIDEQDSYIQSRAD 217 Query: 313 NFRQMEWTLVHIG 351 + +E T+V +G Sbjct: 218 TMQNIESTIVELG 230
>TBCD1_HUMAN (Q86TI0) TBC1 domain family member 1| Length = 1168 Score = 28.9 bits (63), Expect = 7.5 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 6/85 (7%) Frame = +1 Query: 199 AHQASESLVSPLMPSADHYRL------TTRYLDEKLQHLISRSDNFRQMEWTLVHIGLAG 360 + A+E++ S L PSA +RL R L E L+ ++SR + R ++ + + L Sbjct: 473 SQMAAENIGSELPPSATRFRLDMLKNKAKRSLTESLESILSRGNKARGLQEHSISVDL-- 530 Query: 361 QGCLSCTMYHLEESSVQQPSNSEEQ 435 LS T+ ++ ++PS E++ Sbjct: 531 DSSLSSTL----SNTSKEPSVCEKE 551 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,084,283 Number of Sequences: 219361 Number of extensions: 1019840 Number of successful extensions: 2635 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2582 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2634 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
