ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27f07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY220734.1| Hordeum vulgare pathogenesis-related protein 10 (PR-10) mRNA, complete cds Length = 866 Score = 640 bits (323), Expect = 0.0 Identities = 404/431 (93%) Strand = Plus / Plus Query: 18 cagcagcgctagtgtgcagcgagccagtgacagacggacaagaacaagatggtcgtcggc 77 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct: 15 cagcagcgctagtgtgcagcgagccagtgaccgacggacaagaacaagatggtcgccggc 74 Query: 78 tgtgtcatcaccgagcagtgcgccctggcggtgtcgacagagcggctgtggaaggtggtc 137 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 75 tgtgtcatcaccgagcagtgtgccctggcggtgtcgacagagcggctgtggaaggtggtc 134 Query: 138 tactccggcgaggacacggccgccctgcccaaggcctgcgcaggattcatcgacgccgtg 197 | ||||||||||||||||||||||||||||||||||||||| || |||||||||| ||| Sbjct: 135 ttctccggcgaggacacggccgccctgcccaaggcctgcgcgggcttcatcgacgttgtg 194 Query: 198 gacgtcgagggcgacggcggacccggcagcgtcttcaccatgacgctcagcccggcggcg 257 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 195 gacgtcgagggcgacggcggacccggcagcgtcttcaccatgacgctcagtccggcggcg 254 Query: 258 gcggagctgtcaggctcggacgtgatgaagagccgcgtggtggcgcgcgacaacgcggcc 317 ||||||||||||||||||| |||||||| |||||||||| |||| |||||||||||||| Sbjct: 255 gcggagctgtcaggctcgggcgtgatgaggagccgcgtgatggcccgcgacaacgcggct 314 Query: 318 agggtgttcaagacagaggtgctggagggcgacaaggtaagtggccagctcaagtcacag 377 |||||||||||||| ||| | |||||||||| |||||| || |||||||||||||| ||| Sbjct: 315 agggtgttcaagacggagatactggagggcggcaaggtgagcggccagctcaagtcgcag 374 Query: 378 gcggtcgagatgaagctcgaggcggccggggatggtgcttgcgtggcaaagctcagggta 437 | ||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| Sbjct: 375 gtggtcgagatgaagcttgaggcggccggggacggtgcttgtgtggcgaagctcagggtg 434 Query: 438 gagtacgagag 448 ||||||||||| Sbjct: 435 gagtacgagag 445
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 160 ccctgcccaaggcctgcgcaggattcatcgacgccgtggacgtcgaggg 208 |||||||||||| |||||| ||||||||||||||||| || |||||||| Sbjct: 22625479 ccctgcccaaggtctgcgccggattcatcgacgccgtcgaggtcgaggg 22625527 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 105 gcggtgtcgacagagcggctgtggaagg 132 ||||||||| | |||||||||||||||| Sbjct: 22633825 gcggtgtcggcggagcggctgtggaagg 22633852
>gb|AF274851.1|AF274851 Oryza sativa pathogenesis-related protein PR-10b (PR10b) gene, complete cds Length = 2308 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 160 ccctgcccaaggcctgcgcaggattcatcgacgccgtggacgtcgaggg 208 |||||||||||| |||||| ||||||||||||||||| || |||||||| Sbjct: 456 ccctgcccaaggtctgcgccggattcatcgacgccgtcgaggtcgaggg 504
>dbj|AK099157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064O18, full insert sequence Length = 807 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 160 ccctgcccaaggcctgcgcaggattcatcgacgccgtggacgtcgaggg 208 |||||||||||| |||||| ||||||||||||||||| || |||||||| Sbjct: 159 ccctgcccaaggtctgcgccggattcatcgacgccgtcgaggtcgaggg 207
>dbj|AK070762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064O19, full insert sequence Length = 807 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 160 ccctgcccaaggcctgcgcaggattcatcgacgccgtggacgtcgaggg 208 |||||||||||| |||||| ||||||||||||||||| || |||||||| Sbjct: 159 ccctgcccaaggtctgcgccggattcatcgacgccgtcgaggtcgaggg 207
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 160 ccctgcccaaggcctgcgcaggattcatcgacgccgtggacgtcgaggg 208 |||||||||||| |||||| ||||||||||||||||| || |||||||| Sbjct: 22553670 ccctgcccaaggtctgcgccggattcatcgacgccgtcgaggtcgaggg 22553718 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 105 gcggtgtcgacagagcggctgtggaagg 132 ||||||||| | |||||||||||||||| Sbjct: 22562016 gcggtgtcggcggagcggctgtggaagg 22562043
>emb|AL954871.5|CNS08CDA Oryza sativa chromosome 12, . BAC OSJNBb0085B24 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131441 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 160 ccctgcccaaggcctgcgcaggattcatcgacgccgtggacgtcgaggg 208 |||||||||||| |||||| ||||||||||||||||| || |||||||| Sbjct: 128058 ccctgcccaaggtctgcgccggattcatcgacgccgtcgaggtcgaggg 128106
>emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC OSJNBa0027H05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138368 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 160 ccctgcccaaggcctgcgcaggattcatcgacgccgtggacgtcgaggg 208 |||||||||||| |||||| ||||||||||||||||| || |||||||| Sbjct: 70599 ccctgcccaaggtctgcgccggattcatcgacgccgtcgaggtcgaggg 70647 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 105 gcggtgtcgacagagcggctgtggaagg 132 ||||||||| | |||||||||||||||| Sbjct: 78945 gcggtgtcggcggagcggctgtggaagg 78972
>gb|AY310323.1| Streptomyces sp. FR-008 heptaene macrolide complex synthesis gene cluster, complete sequence Length = 138203 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 185 catcgacgccgtggacgtcgagggcg 210 ||||| |||||||||||||||||||| Sbjct: 104027 catcgccgccgtggacgtcgagggcg 104002 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 185 catcgacgccgtggacgtcgagggcg 210 ||||| |||||||||||||||||||| Sbjct: 97886 catcgccgccgtggacgtcgagggcg 97861
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 376 aggcggtcgagatgaagctcg 396 ||||||||||||||||||||| Sbjct: 225072 aggcggtcgagatgaagctcg 225092
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 ggcgacggcggacccggcagc 227 ||||||||||||||||||||| Sbjct: 3369020 ggcgacggcggacccggcagc 3369000
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 333 gaggtgctggagggcgacaag 353 ||||||||||||||||||||| Sbjct: 6076739 gaggtgctggagggcgacaag 6076759
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 cagcgagccagtgacagacg 53 |||||||||||||||||||| Sbjct: 1906563 cagcgagccagtgacagacg 1906582
>ref|NM_002900.2| Homo sapiens retinol binding protein 3, interstitial (RBP3), mRNA Length = 4289 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 tgttcaagacagaggtgctg 341 |||||||||||||||||||| Sbjct: 2312 tgttcaagacagaggtgctg 2331
>gb|AC158990.2| Mus musculus BAC clone RP23-416E18 from chromosome 13, complete sequence Length = 191036 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 tgacgctcagcccggcggcggcgg 261 ||||||||||||||| |||||||| Sbjct: 88861 tgacgctcagcccgggggcggcgg 88884
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 65 gatggtcgtcggctgtgtcatcaccgag 92 ||||||||||||||| ||| |||||||| Sbjct: 1281185 gatggtcgtcggctgggtcttcaccgag 1281212
>gb|AY298956.1| Leifsonia xyli subsp. xyli TetR-like transcriptional regulator, PROV-like protein, PROW-like protein, PROZ-like protein, PROX-like protein, hypothetical proteins, cytochrome oxidase subunit I, cytochrome oxidase subunit II, and cytochrome oxidase subunit IV genes, complete cds Length = 11236 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 65 gatggtcgtcggctgtgtcatcaccgag 92 ||||||||||||||| ||| |||||||| Sbjct: 7702 gatggtcgtcggctgggtcttcaccgag 7729
>ref|XM_748110.1| Aspergillus fumigatus Af293 MFS monosaccharide transporter (Afu5g14540) partial mRNA Length = 1596 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 ccagggtgttcaagacagag 335 |||||||||||||||||||| Sbjct: 1570 ccagggtgttcaagacagag 1551
>gb|AC135892.1| Homo sapiens 12 BAC RP11-433J6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 56520 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 aagacagaggtgctggaggg 346 |||||||||||||||||||| Sbjct: 50506 aagacagaggtgctggaggg 50487
>emb|AL731561.12| Human DNA sequence from clone RP11-463P17 on chromosome 10 Contains a novel gene, gene FLJ32104, a novel gene, the RBP3 gene for retinol binding protein 3, the GDF2 gene for growth differentiation factor 2, the GDF10 gene for growth differentiation factor 10 and three CpG islands, complete sequence Length = 204512 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 tgttcaagacagaggtgctg 341 |||||||||||||||||||| Sbjct: 111273 tgttcaagacagaggtgctg 111254
>gb|DQ452070.1| Salmo salar myogenic regulatory factor 5 mRNA, complete cds Length = 720 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 335 ggtgctggagggcgacaaggtaag 358 ||||||||||||||| |||||||| Sbjct: 660 ggtgctggagggcgagaaggtaag 637
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 cgacgccgtggacgtcgagg 207 |||||||||||||||||||| Sbjct: 4636978 cgacgccgtggacgtcgagg 4636997
>ref|NM_016162.2| Homo sapiens inhibitor of growth family, member 4 (ING4), mRNA Length = 1717 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 aagacagaggtgctggaggg 346 |||||||||||||||||||| Sbjct: 1556 aagacagaggtgctggaggg 1575
>dbj|AK161420.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930568A15 product:unclassifiable, full insert sequence Length = 2020 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 238 tgacgctcagcccggcggcggcgg 261 ||||||||||||||| |||||||| Sbjct: 186 tgacgctcagcccgggggcggcgg 163
>dbj|AK077686.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730521N16 product:zinc finger protein 367, full insert sequence Length = 1971 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 tgacgctcagcccggcggcggcgg 261 ||||||||||||||| |||||||| Sbjct: 505 tgacgctcagcccgggggcggcgg 528
>dbj|AK085094.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430035L18 product:weakly similar to ZINC FINGER PROTEIN 4 (FRAGMENT) [Rattus norvegicus], full insert sequence Length = 3083 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 tgacgctcagcccggcggcggcgg 261 ||||||||||||||| |||||||| Sbjct: 164 tgacgctcagcccgggggcggcgg 187
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 gagccgcgtggtggcgcgcg 306 |||||||||||||||||||| Sbjct: 4110520 gagccgcgtggtggcgcgcg 4110539
>dbj|AK041361.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630005F21 product:weakly similar to ZINC FINGER PROTEIN 4 (FRAGMENT) [Rattus norvegicus], full insert sequence Length = 2753 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 tgacgctcagcccggcggcggcgg 261 ||||||||||||||| |||||||| Sbjct: 437 tgacgctcagcccgggggcggcgg 460
>dbj|AK041331.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630002D23 product:weakly similar to ZINC FINGER PROTEIN 4 (FRAGMENT) [Rattus norvegicus], full insert sequence Length = 1799 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 tgacgctcagcccggcggcggcgg 261 ||||||||||||||| |||||||| Sbjct: 440 tgacgctcagcccgggggcggcgg 463
>dbj|AK033288.1| Mus musculus 15 days embryo male testis cDNA, RIKEN full-length enriched library, clone:8030486J21 product:weakly similar to ZINC FINGER PROTEIN 4 (FRAGMENT) [Rattus norvegicus], full insert sequence Length = 3493 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 tgacgctcagcccggcggcggcgg 261 ||||||||||||||| |||||||| Sbjct: 437 tgacgctcagcccgggggcggcgg 460
>ref|NM_175494.2| Mus musculus zinc finger protein 367 (Zfp367), mRNA Length = 3493 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 tgacgctcagcccggcggcggcgg 261 ||||||||||||||| |||||||| Sbjct: 437 tgacgctcagcccgggggcggcgg 460
>ref|XM_573970.1| PREDICTED: Rattus norvegicus zinc finger protein 367 (predicted) (Zfp367_predicted), mRNA Length = 3495 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 tgacgctcagcccggcggcggcgg 261 ||||||||||||||| |||||||| Sbjct: 413 tgacgctcagcccgggggcggcgg 436
>gb|AF274850.1|AF274850 Oryza sativa pathogenesis-related protein PR-10a (PR10a) gene, complete cds Length = 2594 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 105 gcggtgtcgacagagcggctgtggaagg 132 ||||||||| | |||||||||||||||| Sbjct: 1525 gcggtgtcggcggagcggctgtggaagg 1552
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 cagcccggcggcggcggagc 264 |||||||||||||||||||| Sbjct: 5603269 cagcccggcggcggcggagc 5603250
>gb|AY751283.1| Oncorhynchus mykiss Myf5 (Myf5) mRNA, complete cds Length = 1050 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 335 ggtgctggagggcgacaaggtaag 358 ||||||||||||||| |||||||| Sbjct: 665 ggtgctggagggcgagaaggtaag 642
>dbj|AK071613.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104B18, full insert sequence Length = 814 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 105 gcggtgtcgacagagcggctgtggaagg 132 ||||||||| | |||||||||||||||| Sbjct: 137 gcggtgtcggcggagcggctgtggaagg 164
>gb|BC039844.1| Homo sapiens retinol binding protein 3, interstitial, mRNA (cDNA clone MGC:48862 IMAGE:5578501), complete cds Length = 4279 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 tgttcaagacagaggtgctg 341 |||||||||||||||||||| Sbjct: 2302 tgttcaagacagaggtgctg 2321
>gb|BC085804.1| Rattus norvegicus zinc finger protein 367, mRNA (cDNA clone MGC:93863 IMAGE:7111996), complete cds Length = 3521 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 tgacgctcagcccggcggcggcgg 261 ||||||||||||||| |||||||| Sbjct: 413 tgacgctcagcccgggggcggcgg 436
>ref|NM_001012051.1| Rattus norvegicus zinc finger protein 367 (Zfp367), mRNA Length = 3521 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 tgacgctcagcccggcggcggcgg 261 ||||||||||||||| |||||||| Sbjct: 413 tgacgctcagcccgggggcggcgg 436
>gb|J05253.1|HUMIRBPG Homo sapiens interstitial retinol-binding protein precursor (IRBP) gene, complete cds Length = 9711 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 tgttcaagacagaggtgctg 341 |||||||||||||||||||| Sbjct: 2324 tgttcaagacagaggtgctg 2343
>emb|AJ303378.1|PPE303378 Phlebotomus perniciosus microsatellite DNA, clone AAm24 Length = 406 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 ccggcggcggcggagctgtc 268 |||||||||||||||||||| Sbjct: 376 ccggcggcggcggagctgtc 357
>gb|M33864.1|HUMIRBPG1 Human (cline HGL-3) interstitial retinoid-binding protein 3 (RBP3) gene, exon 1 Length = 3307 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 tgttcaagacagaggtgctg 341 |||||||||||||||||||| Sbjct: 2439 tgttcaagacagaggtgctg 2458
>gb|J03912.1|HUMIRBPM Human interstitial retinol binding protein (IRBP) mRNA, complete cds Length = 4124 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 tgttcaagacagaggtgctg 341 |||||||||||||||||||| Sbjct: 2195 tgttcaagacagaggtgctg 2214
>gb|M22453.1|HUMIRBP Human interphotoreceptor retinoid-binding protein (IRBP) mRNA, complete cds Length = 4275 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 tgttcaagacagaggtgctg 341 |||||||||||||||||||| Sbjct: 2313 tgttcaagacagaggtgctg 2332
>dbj|D38170.1| Rice mRNA for probenazole-inducible protein PBZ1, complete cds Length = 833 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 105 gcggtgtcgacagagcggctgtggaagg 132 ||||||||| | |||||||||||||||| Sbjct: 119 gcggtgtcggcggagcggctgtggaagg 146
>dbj|D82066.1| Oryza sativa gene for PBZ1, complete cds Length = 3188 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 105 gcggtgtcgacagagcggctgtggaagg 132 ||||||||| | |||||||||||||||| Sbjct: 1497 gcggtgtcggcggagcggctgtggaagg 1524 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,292,118 Number of Sequences: 3902068 Number of extensions: 3292118 Number of successful extensions: 74457 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73592 Number of HSP's gapped (non-prelim): 865 length of query: 448 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 426 effective length of database: 17,147,199,772 effective search space: 7304707102872 effective search space used: 7304707102872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
