Clone Information

BLAST Search Result

Clone Name	basd27f05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	LSM7_HUMAN (Q9UK45) U6 snRNA-associated Sm-like protein LSm7	115	1e-25
2	LSM7_MOUSE (Q9CQQ8) U6 snRNA-associated Sm-like protein LSm7	114	3e-25
3	LSM7_YEAST (P53905) U6 snRNA-associated Sm-like protein LSm3	83	7e-16
4	RUXG_CAEEL (Q9N4G9) Probable small nuclear ribonucleoprotein G (...	61	3e-09
5	RUXG_MOUSE (P62309) Small nuclear ribonucleoprotein G (snRNP-G) ...	59	9e-09
6	RUXG_HUMAN (P62308) Small nuclear ribonucleoprotein G (snRNP-G) ...	59	9e-09
7	RUXG_ARATH (O82221) Probable small nuclear ribonucleoprotein G (...	59	1e-08
8	RUXG_DROME (Q9VXE0) Probable small nuclear ribonucleoprotein G (...	55	2e-07
9	RUXG_MEDSA (P24715) Probable small nuclear ribonucleoprotein G (...	54	5e-07
10	RUXG_YEAST (P40204) Small nuclear ribonucleoprotein G (snRNP-G) ...	52	1e-06
11	RUXG_SCHPO (O74966) Probable small nuclear ribonucleoprotein G (...	52	2e-06
12	LSM3_YEAST (P57743) U6 snRNA-associated Sm-like protein LSm3 (Sm...	49	9e-06
13	RUXX_ARCFU (O29386) Putative snRNP Sm-like protein	49	2e-05
14	RUXX_AERPE (Q9YEQ5) Putative snRNP Sm-like protein	47	4e-05
15	LSM3_SCHPO (Q9Y7M4) Probable U6 snRNA-associated Sm-like protein...	45	1e-04
16	LSM8_MOUSE (Q6ZWM4) U6 snRNA-associated Sm-like protein LSm8	45	2e-04
17	LSM8_HUMAN (O95777) U6 snRNA-associated Sm-like protein LSm8	45	2e-04
18	LSM8_SCHPO (O74483) U6 snRNA-associated Sm-like protein LSm8	44	3e-04
19	RUXX_METTH (O26745) Putative snRNP Sm-like protein	44	4e-04
20	RUXX_METMA (Q8PZZ9) Putative snRNP Sm-like protein	44	4e-04
21	LSM3_MOUSE (P62311) U6 snRNA-associated Sm-like protein LSm3	44	5e-04
22	LSM3_HUMAN (P62310) U6 snRNA-associated Sm-like protein LSm3	44	5e-04
23	RUXX_METAC (Q8TL47) Putative snRNP Sm-like protein	43	8e-04
24	RUXX_PYRHO (O74016) Putative snRNP Sm-like protein	40	0.005
25	RUXX_PYRFU (Q8U0P4) Putative snRNP Sm-like protein	40	0.007
26	RUXX_PYRAB (Q9V0Y8) Putative snRNP Sm-like protein	40	0.007
27	RUXX_PYRKO (Q5JIE0) Putative snRNP Sm-like protein	39	0.009
28	LSM5_YEAST (P40089) U6 snRNA-associated Sm-like protein LSm5	39	0.016
29	LSM1_YEAST (P47017) Sm-like protein LSm1 (SPB8 protein)	38	0.027
30	RUXE_YEAST (Q12330) Small nuclear ribonucleoprotein E (snRNP-E) ...	37	0.035
31	RUXX_THEAC (P57670) Putative snRNP Sm-like protein	37	0.046
32	LSM1_MOUSE (Q8VC85) U6 snRNA-associated Sm-like protein LSm1	37	0.061
33	LSM1_HUMAN (O15116) U6 snRNA-associated Sm-like protein LSm1 (Sm...	37	0.061
34	LSM5_MOUSE (P62322) U6 snRNA-associated Sm-like protein LSm5	36	0.079
35	LSM5_HUMAN (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm5	36	0.079
36	YB18_SCHPO (P87173) Hypothetical protein C3D6.08c in chromosome II	34	0.39
37	LSMH_ENCCU (Q8SQH7) Probable U6 snRNA-associated Sm-like protein	33	0.87
38	RUXE_DROME (Q9VLV5) Probable small nuclear ribonucleoprotein E (...	32	1.1
39	RUXE_MOUSE (P62305) Small nuclear ribonucleoprotein E (snRNP-E) ...	31	2.5
40	RUXE_HUMAN (P62304) Small nuclear ribonucleoprotein E (snRNP-E) ...	31	2.5
41	RUXE_CHICK (P62303) Small nuclear ribonucleoprotein E (snRNP-E) ...	31	2.5
42	LSM2_YEAST (P38203) U6 snRNA-associated Sm-like protein LSm2 (Sm...	30	4.3
43	Y335_MYCAV (O07395) UPF0353 protein MAV335	30	4.3
44	Y1517_MYCBO (P64856) UPF0353 protein Mb1517	30	4.3
45	Y1481_MYCTU (P64855) UPF0353 protein Rv1481/MT1528	30	4.3
46	Y1207_MYCPA (Q740Y5) UPF0353 protein MAP_1207	30	4.3
47	SYK_ORYSA (Q6F2U9) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--t...	30	7.4
48	RUXF_SCHPO (O59734) Probable small nuclear ribonucleoprotein F (...	29	9.7

>LSM7_HUMAN (Q9UK45) U6 snRNA-associated Sm-like protein LSm7|
          Length = 103

 Score =  115 bits (287), Expect = 1e-25
 Identities = 52/90 (57%), Positives = 71/90 (78%)
 Frame = +3

Query: 69  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAK 248
           +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  IE+ R+ DD  KL+  
Sbjct: 8   KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67

Query: 249 TRQLGLIVCRGTAVMLVSPTEGTEEIKNPF 338
           TRQLGL+VCRGT+V+L+ P +G E I NPF
Sbjct: 68  TRQLGLVVCRGTSVVLICPQDGMEAIPNPF 97

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>LSM7_MOUSE (Q9CQQ8) U6 snRNA-associated Sm-like protein LSm7|
          Length = 103

 Score =  114 bits (284), Expect = 3e-25
 Identities = 51/90 (56%), Positives = 71/90 (78%)
 Frame = +3

Query: 69  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAK 248
           +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E+ R+ DD  KL+  
Sbjct: 8   KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTED 67

Query: 249 TRQLGLIVCRGTAVMLVSPTEGTEEIKNPF 338
           TRQLGL+VCRGT+V+L+ P +G E I NPF
Sbjct: 68  TRQLGLVVCRGTSVVLICPQDGMEAIPNPF 97

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>LSM7_YEAST (P53905) U6 snRNA-associated Sm-like protein LSm3|
          Length = 107

 Score = 82.8 bits (203), Expect = 7e-16
 Identities = 41/87 (47%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
 Frame = +3

Query: 69  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLK---L 239
           ++E +LDLAK+ D  ++VKL GG+ V G LKGYDQL+NLVLD+ +E+    DD      +
Sbjct: 15  KREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELI 74

Query: 240 SAKTRQLGLIVCRGTAVMLVSPTEGTE 320
           S   R+LGL V RGT ++ +S  EG++
Sbjct: 75  SKNARKLGLTVIRGTILVSLSSAEGSD 101

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>RUXG_CAEEL (Q9N4G9) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm|
           protein G) (Sm-G) (SmG)
          Length = 77

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 27/75 (36%), Positives = 50/75 (66%)
 Frame = +3

Query: 87  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGL 266
           +L K++DK + +KL G R+V+G L+G+D  +N+V+DEA+E++++          +  LG+
Sbjct: 8   ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKD--------GGSVNLGM 59

Query: 267 IVCRGTAVMLVSPTE 311
            V RG +V+++ P E
Sbjct: 60  TVIRGNSVVIMEPKE 74

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>RUXG_MOUSE (P62309) Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)|
           (Sm-G) (SmG)
          Length = 76

 Score = 59.3 bits (142), Expect = 9e-09
 Identities = 27/75 (36%), Positives = 46/75 (61%)
 Frame = +3

Query: 87  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGL 266
           +L KF+DK + +KL GGR V G L+G+D  +NLV+DE +E        +  S +   +G+
Sbjct: 8   ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59

Query: 267 IVCRGTAVMLVSPTE 311
           +V RG +++++   E
Sbjct: 60  VVIRGNSIIMLEALE 74

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>RUXG_HUMAN (P62308) Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)|
           (Sm-G) (SmG)
          Length = 76

 Score = 59.3 bits (142), Expect = 9e-09
 Identities = 27/75 (36%), Positives = 46/75 (61%)
 Frame = +3

Query: 87  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGL 266
           +L KF+DK + +KL GGR V G L+G+D  +NLV+DE +E        +  S +   +G+
Sbjct: 8   ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59

Query: 267 IVCRGTAVMLVSPTE 311
           +V RG +++++   E
Sbjct: 60  VVIRGNSIIMLEALE 74

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>RUXG_ARATH (O82221) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm|
           protein G) (Sm-G) (SmG)
          Length = 80

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 30/75 (40%), Positives = 45/75 (60%)
 Frame = +3

Query: 87  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGL 266
           DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D  +E             KT  +G+
Sbjct: 9   DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGND--------KT-DIGM 59

Query: 267 IVCRGTAVMLVSPTE 311
           +V RG +++ V   E
Sbjct: 60  VVIRGNSIVTVEALE 74

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>RUXG_DROME (Q9VXE0) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm|
           protein G) (Sm-G) (SmG)
          Length = 76

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 27/71 (38%), Positives = 46/71 (64%)
 Frame = +3

Query: 87  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGL 266
           ++ K++DK + +KL GGR VTG L+G+D  +N+VLD+ +E   E  D  K       +G+
Sbjct: 8   EVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVE---ECKDNTK-----NNIGM 59

Query: 267 IVCRGTAVMLV 299
           +V RG ++++V
Sbjct: 60  VVIRGNSIVMV 70

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>RUXG_MEDSA (P24715) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm|
           protein G) (Sm-G) (SmG)
          Length = 81

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 25/74 (33%), Positives = 42/74 (56%)
 Frame = +3

Query: 90  LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLI 269
           L K++DK +Q+ L   R + GTL+G+DQ +NLV+D  +E    + +          +G++
Sbjct: 10  LKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKN---------DIGMV 60

Query: 270 VCRGTAVMLVSPTE 311
           V RG +V+ V   E
Sbjct: 61  VIRGNSVVTVEALE 74

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>RUXG_YEAST (P40204) Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)|
           (Sm-G) (SmG)
          Length = 77

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
 Frame = +3

Query: 87  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGL 266
           +L K++DK + + + G R+V G L+GYD  LN+VLD+A+E   E  DP    A   QLGL
Sbjct: 6   ELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGE--DP----ANNHQLGL 59

Query: 267 -IVCRGTAVM 293
             V RG +++
Sbjct: 60  QTVIRGNSII 69

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>RUXG_SCHPO (O74966) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm|
           protein G) (Sm-G) (SmG)
          Length = 77

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 26/71 (36%), Positives = 45/71 (63%)
 Frame = +3

Query: 87  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGL 266
           DL K++D+ V V+L G R+V G L+GYD  LN+VL+++IE         K+  +  ++G 
Sbjct: 8   DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIE--------EKVDGEKVKIGS 59

Query: 267 IVCRGTAVMLV 299
           +  RG +V+++
Sbjct: 60  VAIRGNSVIMI 70

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>LSM3_YEAST (P57743) U6 snRNA-associated Sm-like protein LSm3 (SmX4 protein)|
          Length = 89

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
 Frame = +3

Query: 75  ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKT 251
           ET LDL K  +D+ V +KL G R + GTL+ +D   N+VL +A+E   + ++  +LS   
Sbjct: 2   ETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNE-ELSESE 60

Query: 252 RQLGLIVCRGTAVMLVS-PTE 311
           R+  ++  RG  V L+S P+E
Sbjct: 61  RRCEMVFIRGDTVTLISTPSE 81

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>RUXX_ARCFU (O29386) Putative snRNP Sm-like protein|
          Length = 77

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 29/69 (42%), Positives = 39/69 (56%)
 Frame = +3

Query: 114 VQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVCRGTAVM 293
           V V+L GGR+  GTL GYD  +NLVL +A E +  +          R++G +V RG  V+
Sbjct: 17  VIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGE--------VVRKVGSVVIRGDTVV 68

Query: 294 LVSPTEGTE 320
            VSP  G E
Sbjct: 69  FVSPAPGGE 77

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>RUXX_AERPE (Q9YEQ5) Putative snRNP Sm-like protein|
          Length = 77

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 27/76 (35%), Positives = 42/76 (55%)
 Frame = +3

Query: 78  TVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQ 257
           T+  +  +VD  V VKL  G ++ G LK YDQ LN++L +A E               R+
Sbjct: 9   TLRMMLDYVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIG---------ETSIRR 59

Query: 258 LGLIVCRGTAVMLVSP 305
           LGL + RG +V++++P
Sbjct: 60  LGLTLVRGDSVVVITP 75

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>LSM3_SCHPO (Q9Y7M4) Probable U6 snRNA-associated Sm-like protein LSm3|
          Length = 93

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
 Frame = +3

Query: 84  LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEF-----EREQDDPLKLSA 245
           LDL +  +D+ V VKL G R++ G L  YD+ LN+VL +A E      + E D    L  
Sbjct: 11  LDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKT 70

Query: 246 KTRQLGLIVCRGTAVMLVSP 305
             +   ++  RG +V+L++P
Sbjct: 71  IRKHYEMLFVRGDSVILIAP 90

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>LSM8_MOUSE (Q6ZWM4) U6 snRNA-associated Sm-like protein LSm8|
          Length = 95

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
 Frame = +3

Query: 90  LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIE--FEREQDDPLKLSAKTRQLG 263
           L  ++++ V V  + GR + GTLKG+DQ +NL+LDE+ E  F   Q        +   LG
Sbjct: 4   LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQ------GVEQVVLG 57

Query: 264 LIVCRGTAVMLV 299
           L + RG  V ++
Sbjct: 58  LYIVRGDNVAVI 69

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>LSM8_HUMAN (O95777) U6 snRNA-associated Sm-like protein LSm8|
          Length = 95

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
 Frame = +3

Query: 90  LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIE--FEREQDDPLKLSAKTRQLG 263
           L  ++++ V V  + GR + GTLKG+DQ +NL+LDE+ E  F   Q        +   LG
Sbjct: 4   LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQ------GVEQVVLG 57

Query: 264 LIVCRGTAVMLV 299
           L + RG  V ++
Sbjct: 58  LYIVRGDNVAVI 69

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>LSM8_SCHPO (O74483) U6 snRNA-associated Sm-like protein LSm8|
          Length = 94

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 26/72 (36%), Positives = 40/72 (55%)
 Frame = +3

Query: 84  LDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLG 263
           + LA F+++ VQV    GR V G+LKG+D   NL+L ++ E     D  +    +T  LG
Sbjct: 1   MSLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDM----ETIPLG 56

Query: 264 LIVCRGTAVMLV 299
           + + RG  V +V
Sbjct: 57  VYLLRGENVAMV 68

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>RUXX_METTH (O26745) Putative snRNP Sm-like protein|
          Length = 81

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 25/72 (34%), Positives = 40/72 (55%)
 Frame = +3

Query: 90  LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLI 269
           L   ++  V +KL G R+  G LK +D  +NLVL++A E E  +         TR+LG +
Sbjct: 18  LGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGE--------VTRRLGTV 69

Query: 270 VCRGTAVMLVSP 305
           + RG  ++ +SP
Sbjct: 70  LIRGDNIVYISP 81

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>RUXX_METMA (Q8PZZ9) Putative snRNP Sm-like protein|
          Length = 72

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 34/82 (41%), Positives = 45/82 (54%)
 Frame = +3

Query: 60  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKL 239
           M+ R   +L+ A  +D  V V+L G R+  G LKGYD  +NLVLD A E  RE +   K 
Sbjct: 1   MANRPLDILNNA--LDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-REGEVVSKF 57

Query: 240 SAKTRQLGLIVCRGTAVMLVSP 305
           S+       +V RG  V+ VSP
Sbjct: 58  SS-------VVIRGDNVVYVSP 72

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>LSM3_MOUSE (P62311) U6 snRNA-associated Sm-like protein LSm3|
          Length = 101

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
 Frame = +3

Query: 75  ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE------AIEFEREQDDPL 233
           E  LDL +  +D+ + VK+   R++ G L  YDQ LN++L +       IE + E  + +
Sbjct: 14  EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 73

Query: 234 KLSAKTRQLGLIVCRGTAVMLVSP 305
             S K R + ++  RG  V+LV+P
Sbjct: 74  YKSTK-RNIPMLFVRGDGVVLVAP 96

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>LSM3_HUMAN (P62310) U6 snRNA-associated Sm-like protein LSm3|
          Length = 101

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
 Frame = +3

Query: 75  ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE------AIEFEREQDDPL 233
           E  LDL +  +D+ + VK+   R++ G L  YDQ LN++L +       IE + E  + +
Sbjct: 14  EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 73

Query: 234 KLSAKTRQLGLIVCRGTAVMLVSP 305
             S K R + ++  RG  V+LV+P
Sbjct: 74  YKSTK-RNIPMLFVRGDGVVLVAP 96

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>RUXX_METAC (Q8TL47) Putative snRNP Sm-like protein|
          Length = 72

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 33/82 (40%), Positives = 45/82 (54%)
 Frame = +3

Query: 60  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKL 239
           M+ R   +L+ A  +D  V V+L G R+  G LKGYD  +NLVLD A E  R+ +   K 
Sbjct: 1   MANRPLDILNNA--LDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-RDGEVVSKF 57

Query: 240 SAKTRQLGLIVCRGTAVMLVSP 305
           S+       +V RG  V+ VSP
Sbjct: 58  SS-------VVIRGDNVVYVSP 72

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>RUXX_PYRHO (O74016) Putative snRNP Sm-like protein|
          Length = 75

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 29/70 (41%), Positives = 38/70 (54%)
 Frame = +3

Query: 102 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVCRG 281
           +DK V V L  G +  G L GYD  LN+VL +A   E  QD  +      ++ G IV RG
Sbjct: 13  LDKDVLVILKKGFEFRGRLIGYDIHLNVVLADA---EMVQDGEV-----VKKYGKIVIRG 64

Query: 282 TAVMLVSPTE 311
             V+ +SPTE
Sbjct: 65  DNVLAISPTE 74

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>RUXX_PYRFU (Q8U0P4) Putative snRNP Sm-like protein|
          Length = 76

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 30/72 (41%), Positives = 38/72 (52%)
 Frame = +3

Query: 96  KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVC 275
           K +DK V V L  G +  G L GYD  LN+VL  A   E  QD  +      ++ G IV 
Sbjct: 11  KSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANA---ELLQDGEV-----VKKYGKIVI 62

Query: 276 RGTAVMLVSPTE 311
           RG  V+ +SPTE
Sbjct: 63  RGDNVLAISPTE 74

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>RUXX_PYRAB (Q9V0Y8) Putative snRNP Sm-like protein|
          Length = 75

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 29/70 (41%), Positives = 38/70 (54%)
 Frame = +3

Query: 102 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVCRG 281
           +DK V V L  G +  G L GYD  LN+VL +A   E  QD  +      ++ G IV RG
Sbjct: 13  LDKDVLVILKKGFEFRGRLIGYDIHLNVVLADA---EMIQDGEV-----VKRYGKIVIRG 64

Query: 282 TAVMLVSPTE 311
             V+ +SPTE
Sbjct: 65  DNVLAISPTE 74

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>RUXX_PYRKO (Q5JIE0) Putative snRNP Sm-like protein|
          Length = 76

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 29/72 (40%), Positives = 38/72 (52%)
 Frame = +3

Query: 96  KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVC 275
           K +DK V V L  G +  G L GYD  LN+VL +A   E  QD  +      ++ G IV 
Sbjct: 11  KSLDKDVLVLLKRGNEFRGKLIGYDIHLNVVLADA---ELIQDGEV-----VKKYGKIVI 62

Query: 276 RGTAVMLVSPTE 311
           RG  V+ +SP E
Sbjct: 63  RGDNVLALSPVE 74

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>LSM5_YEAST (P40089) U6 snRNA-associated Sm-like protein LSm5|
          Length = 93

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 17/70 (24%), Positives = 39/70 (55%)
 Frame = +3

Query: 96  KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVC 275
           K +++ V + L   R+  GTL G+D  +N++L++A+E+  + +D  +     +  G ++ 
Sbjct: 14  KTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLL 73

Query: 276 RGTAVMLVSP 305
            G  + ++ P
Sbjct: 74  SGNNIAILVP 83

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>LSM1_YEAST (P47017) Sm-like protein LSm1 (SPB8 protein)|
          Length = 172

 Score = 37.7 bits (86), Expect = 0.027
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
 Frame = +3

Query: 78  TVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIE---FEREQDDPLKLSAK 248
           T   +   VD+ + V L  GR + G L+ +DQ  NL+L + +E   F  E     K + +
Sbjct: 42  TTAAIVSSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEEN----KYAEE 97

Query: 249 TRQLGLIVCRGTAVMLV---------SPTEGTEEIKNPFQEA 347
            R  G+ + RG  V+++          P E  E I  PF+EA
Sbjct: 98  DR--GIFMIRGENVVMLGEVDIDKEDQPLEAMERI--PFKEA 135

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>RUXE_YEAST (Q12330) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)|
           (Sm-E) (SmE)
          Length = 94

 Score = 37.4 bits (85), Expect = 0.035
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = +3

Query: 135 GRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVCRGTAVMLVSPTE 311
           G ++ G + G+D+ +N+V+DEA+E      D  +   K   LG I+ +G  + L++  +
Sbjct: 36  GIRIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94

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>RUXX_THEAC (P57670) Putative snRNP Sm-like protein|
          Length = 83

 Score = 37.0 bits (84), Expect = 0.046
 Identities = 21/75 (28%), Positives = 38/75 (50%)
 Frame = +3

Query: 90  LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLI 269
           L   + + V + + G R+ +G L+GYD  +N+VL  A E    ++  +           +
Sbjct: 14  LKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGV--------YDRV 65

Query: 270 VCRGTAVMLVSPTEG 314
           + RG  V+ VSP++G
Sbjct: 66  LVRGDNVIFVSPSKG 80

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>LSM1_MOUSE (Q8VC85) U6 snRNA-associated Sm-like protein LSm1|
          Length = 133

 Score = 36.6 bits (83), Expect = 0.061
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
 Frame = +3

Query: 90  LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQL--G 263
           L + +DK   V L  GR + G L+  DQ  NLVL + +E        + +  K   +  G
Sbjct: 10  LIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVE-------RIHVGKKYGDIPRG 62

Query: 264 LIVCRGTAVMLVSPTEGTEEIKNPFQEADGEQ 359
           + V RG  V+L+   +  +E   P Q+   E+
Sbjct: 63  IFVVRGENVVLLGEIDLEKESDTPLQQVSIEE 94

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>LSM1_HUMAN (O15116) U6 snRNA-associated Sm-like protein LSm1 (Small nuclear|
           ribonuclear CaSm) (Cancer-associated Sm-like)
          Length = 133

 Score = 36.6 bits (83), Expect = 0.061
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
 Frame = +3

Query: 90  LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQL--G 263
           L + +DK   V L  GR + G L+  DQ  NLVL + +E        + +  K   +  G
Sbjct: 10  LIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVE-------RIHVGKKYGDIPRG 62

Query: 264 LIVCRGTAVMLVSPTEGTEEIKNPFQEADGEQ 359
           + V RG  V+L+   +  +E   P Q+   E+
Sbjct: 63  IFVVRGENVVLLGEIDLEKESDTPLQQVSIEE 94

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>LSM5_MOUSE (P62322) U6 snRNA-associated Sm-like protein LSm5|
          Length = 90

 Score = 36.2 bits (82), Expect = 0.079
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +3

Query: 96  KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVC 275
           K +   + + +   +++ GTL G+D  +N+VL++  EFE   +       +  +L  I+ 
Sbjct: 19  KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE-----GRRITKLDQILL 73

Query: 276 RGTAV-MLVSPTEGTE 320
            G  + MLV   EG E
Sbjct: 74  NGNNITMLVPGGEGPE 89

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>LSM5_HUMAN (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm5|
          Length = 90

 Score = 36.2 bits (82), Expect = 0.079
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +3

Query: 96  KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVC 275
           K +   + + +   +++ GTL G+D  +N+VL++  EFE   +       +  +L  I+ 
Sbjct: 19  KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE-----GRRITKLDQILL 73

Query: 276 RGTAV-MLVSPTEGTE 320
            G  + MLV   EG E
Sbjct: 74  NGNNITMLVPGGEGPE 89

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>YB18_SCHPO (P87173) Hypothetical protein C3D6.08c in chromosome II|
          Length = 140

 Score = 33.9 bits (76), Expect = 0.39
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +3

Query: 90  LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIE 206
           L  +VD+ V V L  G+++ G L+ +DQ  NL+L   IE
Sbjct: 16  LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIE 54

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>LSMH_ENCCU (Q8SQH7) Probable U6 snRNA-associated Sm-like protein|
          Length = 70

 Score = 32.7 bits (73), Expect = 0.87
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 90  LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVL 191
           L  ++ + V+VK   G   TGTL+G+D+ +NL+L
Sbjct: 8   LKMYLKERVEVKTKSGEAYTGTLEGFDEHINLML 41

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>RUXE_DROME (Q9VLV5) Probable small nuclear ribonucleoprotein E (snRNP-E) (Sm|
           protein E) (Sm-E) (SmE)
          Length = 94

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
 Frame = +3

Query: 141 QVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQ---LGLIVCRG---TAVMLVS 302
           ++ G + G+D+ +NLVLD+A E          +  KTRQ   LG I+ +G   T +  VS
Sbjct: 41  RIEGHIVGFDEYMNLVLDDAEE----------VYVKTRQRRNLGRIMLKGDNITLIQNVS 90

Query: 303 PTE 311
           PT+
Sbjct: 91  PTK 93

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>RUXE_MOUSE (P62305) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)|
           (Sm-E) (SmE)
          Length = 92

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +3

Query: 141 QVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVCRGTAVMLV 299
           ++ G + G+D+ +NLVLD+A E   +       +   +QLG I+ +G  + L+
Sbjct: 42  RIEGCIIGFDEYMNLVLDDAEEIHSK-------TKSRKQLGRIMLKGDNITLL 87

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>RUXE_HUMAN (P62304) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)|
           (Sm-E) (SmE)
          Length = 92

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +3

Query: 141 QVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVCRGTAVMLV 299
           ++ G + G+D+ +NLVLD+A E   +       +   +QLG I+ +G  + L+
Sbjct: 42  RIEGCIIGFDEYMNLVLDDAEEIHSK-------TKSRKQLGRIMLKGDNITLL 87

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>RUXE_CHICK (P62303) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)|
           (Sm-E) (SmE)
          Length = 92

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +3

Query: 141 QVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVCRGTAVMLV 299
           ++ G + G+D+ +NLVLD+A E   +       +   +QLG I+ +G  + L+
Sbjct: 42  RIEGCIIGFDEYMNLVLDDAEEIHSK-------TKSRKQLGRIMLKGDNITLL 87

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>LSM2_YEAST (P38203) U6 snRNA-associated Sm-like protein LSm2 (Small nuclear|
           ribonucleoprotein D homolog SNP3)
          Length = 95

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 102 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLD 194
           VD+ V V+L    ++ GTL+  DQ LNL LD
Sbjct: 11  VDQEVVVELKNDIEIKGTLQSVDQFLNLKLD 41

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>Y335_MYCAV (O07395) UPF0353 protein MAV335|
          Length = 335

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = +3

Query: 258 LGLIVCRGTAVMLVSPTEGTEEIKN 332
           LGLI   GTA +LVSPT   E  KN
Sbjct: 139 LGLIAYAGTATVLVSPTTNREATKN 163

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>Y1517_MYCBO (P64856) UPF0353 protein Mb1517|
          Length = 335

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = +3

Query: 258 LGLIVCRGTAVMLVSPTEGTEEIKN 332
           LGLI   GTA +LVSPT   E  KN
Sbjct: 139 LGLIAYAGTATVLVSPTTNREATKN 163

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>Y1481_MYCTU (P64855) UPF0353 protein Rv1481/MT1528|
          Length = 335

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = +3

Query: 258 LGLIVCRGTAVMLVSPTEGTEEIKN 332
           LGLI   GTA +LVSPT   E  KN
Sbjct: 139 LGLIAYAGTATVLVSPTTNREATKN 163

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>Y1207_MYCPA (Q740Y5) UPF0353 protein MAP_1207|
          Length = 335

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = +3

Query: 258 LGLIVCRGTAVMLVSPTEGTEEIKN 332
           LGLI   GTA +LVSPT   E  KN
Sbjct: 139 LGLIAYAGTATVLVSPTTNREATKN 163

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>SYK_ORYSA (Q6F2U9) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)|
           (LysRS)
          Length = 602

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 591 YMHKHLSEITIGEYIRKYIRVNI 523
           Y HK L+ IT+ +YI KY  +N+
Sbjct: 101 YPHKFLANITVADYIEKYKSMNV 123

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>RUXF_SCHPO (O59734) Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm|
           protein F) (Sm-F) (SmF)
          Length = 78

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 24/70 (34%), Positives = 32/70 (45%)
 Frame = +3

Query: 90  LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLI 269
           L   + K V V+L  G++  GTL+  D  +NL L  A E        L    KT  LG I
Sbjct: 12  LQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEE--------LVDGVKTGDLGEI 63

Query: 270 VCRGTAVMLV 299
           + R   V+ V
Sbjct: 64  LIRCNNVLWV 73


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,731,604
Number of Sequences: 219361
Number of extensions: 1740079
Number of successful extensions: 5104
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 4937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5100
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result