>SYGB_VIBPA (Q87TP8) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)|
           (Glycine--tRNA ligase beta chain) (GlyRS)
          Length = 688

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 15/52 (28%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
 Frame = +2

Query: 428 QELYIRIRHEAAVKSLTKDMQQ----DDNKEVLKRFICLSNVQSKQHQPLVQ 571
           +E ++++  EA V ++  D +     D+NK++L  FI +SN++SK+ + +++
Sbjct: 265 EEEFLKVPSEALVYTMKGDQKYFPVYDENKKLLPNFIFVSNIESKEPRYVIE 316

>PININ_BOVIN (P79122) Pinin|
          Length = 703

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +2

Query: 335 REVPIIHIDILCYMSSRPWKGSYLQQEDEDMQELYIRIRHEAAVKSLTK--DMQQDDNKE 508
           +E+PI+H D               Q+E+E  QE+ +++  E  V+   K  D Q ++  +
Sbjct: 347 KEIPIVHSD-----------AEKEQEEEEQKQEMEVKMEEETEVRESEKQQDSQPEEVMD 395

Query: 509 VLKRFICLSNVQSKQ 553
           VL+    + NV ++Q
Sbjct: 396 VLEMVESVKNVIAEQ 410

>PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-binding protein 7)|
           (TBP-7)
          Length = 418

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
 Frame = +2

Query: 320 VQVLPREVPIIHIDILCYMSSRPWKG-SYLQQEDEDMQELYIR---IRHEAAVKSLTKDM 487
           V+ +  E+P + +       SRP  G S+L  E ED+++LY R   ++ E     + ++ 
Sbjct: 8   VEKIQDEIPALSV-------SRPQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEY 60

Query: 488 QQDDNKEVLKRFI-CLSNVQSKQHQPLV 568
            +D+ K + K F+     V+  Q  PLV
Sbjct: 61  IKDEQKNLKKEFLHAQEEVKRIQSIPLV 88

>PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)|
           (MB67-interacting protein) (TAT-binding protein 7)
           (TBP-7) (CIP21)
          Length = 418

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
 Frame = +2

Query: 320 VQVLPREVPIIHIDILCYMSSRPWKG-SYLQQEDEDMQELYIR---IRHEAAVKSLTKDM 487
           V+ +  E+P + +       SRP  G S+L  E ED+++LY R   ++ E     + ++ 
Sbjct: 8   VEKIQDEIPALSV-------SRPQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEY 60

Query: 488 QQDDNKEVLKRFI-CLSNVQSKQHQPLV 568
            +D+ K + K F+     V+  Q  PLV
Sbjct: 61  IKDEQKNLKKEFLHAQEEVKRIQSIPLV 88

>PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)|
           (MB67-interacting protein) (TAT-binding protein 7)
           (TBP-7)
          Length = 418

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
 Frame = +2

Query: 380 SRPWKG-SYLQQEDEDMQELYIR---IRHEAAVKSLTKDMQQDDNKEVLKRFI-CLSNVQ 544
           SRP  G S+L  E ED+++LY R   ++ E     + ++  +D+ K + K F+     V+
Sbjct: 21  SRPQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVK 80

Query: 545 SKQHQPLV 568
             Q  PLV
Sbjct: 81  RIQSIPLV 88

>UVRA_OCEIH (Q8ENJ6) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 958

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
 Frame = +2

Query: 392 KGSYLQQEDEDMQELYIRIRHEAAVKSLTKDMQQDDNKE-----VLKRFICLSNVQSK 550
           KG +++  +   QE Y+RIR +  ++ +T D+Q + NK+     V+ R +    V S+
Sbjct: 161 KGEHVKILENLKQEGYVRIRVDNEMREVTDDIQLEKNKKHSIEVVIDRIVVKDGVASR 218

>NRDC_RAT (P47245) Nardilysin precursor (EC 3.4.24.61) (N-arginine dibasic|
           convertase) (NRD convertase) (NRD-C)
          Length = 1161

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
 Frame = -1

Query: 232 DDAEDDPEE-----RSSGGE*LDSSPRFDANEHNDDPLDAPE 122
           DD +DD E+     +    E  D    FD +EH+DD LD  E
Sbjct: 160 DDDDDDDEDSGAEIQDDDEEGFDDEEEFDDDEHDDDDLDNEE 201

>NUCKS_RAT (Q9EPJ0) Nuclear ubiquitous casein and cyclin-dependent kinases|
           substrate
          Length = 243

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/68 (23%), Positives = 34/68 (50%)
 Frame = +2

Query: 395 GSYLQQEDEDMQELYIRIRHEAAVKSLTKDMQQDDNKEVLKRFICLSNVQSKQHQPLVQQ 574
           G   Q++ ED +E  ++ + + +  +   + ++DD+K V ++    S   SKQ + L++ 
Sbjct: 51  GKNSQEDSEDSEEKDVKTKKDDSHSAEDSEDEKDDHKSVRQQRQAASKAASKQREMLLED 110

Query: 575 CQFTCTPE 598
                 PE
Sbjct: 111 VGSEEEPE 118

>NUCKS_MOUSE (Q80XU3) Nuclear ubiquitous casein and cyclin-dependent kinases|
           substrate (JC7)
          Length = 234

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/68 (23%), Positives = 34/68 (50%)
 Frame = +2

Query: 395 GSYLQQEDEDMQELYIRIRHEAAVKSLTKDMQQDDNKEVLKRFICLSNVQSKQHQPLVQQ 574
           G   Q++ ED +E  ++ + + +  +   + ++DD+K V ++    S   SKQ + L++ 
Sbjct: 51  GKNSQEDSEDSEEKDVKTKKDDSHSAEDSEDEKDDHKNVRQQRQAASKAASKQREMLLED 110

Query: 575 CQFTCTPE 598
                 PE
Sbjct: 111 VGSEEEPE 118

>INVO_MOUSE (P48997) Involucrin|
          Length = 467

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +2

Query: 407 QQEDEDMQELYIRIRHEAAVKSLTKDMQQDDNKEVLKRFICLSNVQSKQHQPLV 568
           QQ++  MQE ++R + +   +   +  QQ   +E  ++ +CL   Q +Q Q ++
Sbjct: 121 QQQEPQMQEQHLR-QQQQQQQQQQQQQQQQQQQETQEQGLCLGQKQQQQQQDML 173

>KINH_MOUSE (Q61768) Kinesin heavy chain (Ubiquitous kinesin heavy chain)|
           (UKHC)
          Length = 963

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 12/36 (33%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
 Frame = +2

Query: 404 LQQEDEDMQELYIRI-RHEAAVKSLTKDMQQDDNKE 508
           +++ ++++    +RI +HEA +KSLT+ +Q D+ K+
Sbjct: 622 MEENEKELAACQLRISQHEAKIKSLTEYLQNDEQKK 657

>IMA1_YEAST (Q02821) Importin alpha subunit (Karyopherin alpha subunit)|
           (Serine-rich RNA polymerase I suppressor protein)
          Length = 542

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +2

Query: 386 PWKGSYLQQEDEDM----QELYIRIRHEAAVKSLTKDMQQDDNKEVLKRFICLSNVQSKQ 553
           P  G+   +EDE      Q+ Y +++ E  +  +T+ +  DD +E L   +    + S++
Sbjct: 61  PTDGADSDEEDESSVSADQQFYSQLQQE--LPQMTQQLNSDDMQEQLSATVKFRQILSRE 118

Query: 554 HQP 562
           H+P
Sbjct: 119 HRP 121

>MYBP_MAIZE (P27898) Myb-related protein P|
          Length = 399

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 37  TKLATGLCAVRPPALGKKKITLMLLLIRPRERPAGRRCAHWRR 165
           ++ +T     RPP+  K     +LLL+  R RPA R  A WRR
Sbjct: 288 SRTSTARSCGRPPSRWK-----LLLLLLLRRRPAPRTIASWRR 325

>GCR_MOUSE (P06537) Glucocorticoid receptor (GR)|
          Length = 783

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 348 IGTSLGST-WTALSWQEAGLAAKTARREVPRPRSPAARCSTMLKMTLKNDHQEGSN 184
           +G S G T +  L    A L   T+R E P+  +PAA C+T  +      H + S+
Sbjct: 119 LGLSSGETDFRLLEESIANLNRSTSRPENPKSSTPAAGCATPTEKEFPQTHSDPSS 174


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,994,858
Number of Sequences: 219361
Number of extensions: 1424252
Number of successful extensions: 4469
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4467
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)