ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd27e23 |
|---|---|
| Clone Library Name | barley_pub |
>CDC2A_ARATH (P24100) Cell division control protein 2 homolog A (EC 2.7.11.22)| (EC 2.7.11.23) Length = 294 Score = 31.6 bits (70), Expect = 0.50 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +2 Query: 197 WRGIISHPDHRKALPQYHLHDLAGFLYSSDVD 292 WRG+ S PD++ A P++ DL F+ + D D Sbjct: 228 WRGVTSLPDYKSAFPKWKPTDLETFVPNLDPD 259
>COAE_RICPR (Q9ZCK0) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A| kinase) Length = 191 Score = 31.2 bits (69), Expect = 0.65 Identities = 12/56 (21%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Frame = +2 Query: 131 LVEILSRVPYKSLCRFKCVSKRWRGIISHPDHRKALPQ---YHLHDLAGFLYSSDV 289 ++ LS YK+ C +C+ + ++ I+ K LP+ +++ ++ +Y++D+ Sbjct: 17 ILNYLSAKGYKTFCADRCIKELYKDIVLQTQILKILPELEYFNIRKISNLIYNNDI 72
>GID2_ORYSA (Q7XAK4) F-box protein GID2 (Gibberellin-insensitive dwarf protein| 2) (Protein GIBBERELLIN INSENSITIVE DWARF2) Length = 212 Score = 31.2 bits (69), Expect = 0.65 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +2 Query: 74 PAAMADGRLNPADKLTEDLLVEILSRVPYKSLCRFKCVSKRWR 202 P +G L EDL+ E+L R ++L CVS+ WR Sbjct: 62 PEDAGEGEQPRVPDLGEDLVFEVLRRAEARTLAAAACVSRGWR 104
>POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 30.8 bits (68), Expect = 0.85 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -1 Query: 270 KPARSWRWYCGSALRWSGWEMMPR 199 KP R W Y L W+GW + PR Sbjct: 77 KPGRPWPLYGNEGLGWAGWLLSPR 100
>POF11_SCHPO (Q09855) F-box/WD-repeat protein pof11| Length = 506 Score = 30.8 bits (68), Expect = 0.85 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = +2 Query: 122 EDLLVEILSRVPYKSLCRFKCVSKRWRGIISHPDHRKAL 238 E++ + + S + LC+ K +SKRW+ ++ P KAL Sbjct: 78 EEVSLRVFSYLDQLDLCKCKLMSKRWKRLLEDPGIWKAL 116
>ICEV_PSESX (O33479) Ice nucleation protein| Length = 1196 Score = 30.8 bits (68), Expect = 0.85 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 6/51 (11%) Frame = -1 Query: 177 KRHSDLYGTRDRISTRRSSVSLSAGFSR------PSAIAAGRGGTQPAEER 43 + HSDL ST S+ SL AG+ S + AG G TQ A+ER Sbjct: 693 REHSDLVAGYGSTSTAGSNSSLIAGYGSTQTAGFKSIMTAGYGSTQTAQER 743
>FBXL2_MOUSE (Q8BH16) F-box/LRR-repeat protein 2 (F-box and leucine-rich repeat| protein 2) Length = 423 Score = 30.8 bits (68), Expect = 0.85 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Frame = +2 Query: 89 DGRLNPADKLTEDLLVEILSRVPYKSLCRFKCVSKRWRGIISHPDHRKALPQYHLH-DLA 265 DG +N KL ++LL+ I S + +LCR +SK W + + + + ++ D+ Sbjct: 8 DGLINK--KLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRVDLFNFQTDVE 65 Query: 266 GFLYSSDVDKAGWFGRPVSAHNFTGV 343 G + + + G F R +S GV Sbjct: 66 GRVVENISKRCGGFLRKLSLRGCIGV 91
>ICEN_PSESY (P06620) Ice nucleation protein| Length = 1200 Score = 30.8 bits (68), Expect = 0.85 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%) Frame = -1 Query: 177 KRHSDLYGTRDRISTRRSSVSLSAGFSR------PSAIAAGRGGTQPAEERVA 37 + HSDL ST S+ SL AG+ S + AG G TQ A+ER + Sbjct: 697 REHSDLVTGYGSTSTAGSNSSLIAGYGSTQTAGFKSILTAGYGSTQTAQERTS 749
>SM30_HEMPU (Q25116) 30 kDa spicule matrix protein precursor| Length = 288 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -1 Query: 267 PARSWRWYCGSALRWSGWEMMPRHRLETHL 178 PA W+WY G + ++ WE M R E L Sbjct: 140 PAGLWQWYSGEPVTYTNWEGMVAPRAELGL 169
>ICEK_PSESX (O30611) Ice nucleation protein| Length = 1148 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 6/51 (11%) Frame = -1 Query: 177 KRHSDLYGTRDRISTRRSSVSLSAGFSR------PSAIAAGRGGTQPAEER 43 + HSDL ST S+ SL AG+ S + AG G TQ A+ER Sbjct: 645 REHSDLVTGYGSTSTAGSNSSLIAGYGSTQTAGFKSILTAGYGSTQTAQER 695
>SYMPK_MOUSE (Q80X82) Symplekin| Length = 1284 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = -1 Query: 99 SRPSAIAAGRGGTQPAEERVAAREPVPRCSS 7 S PS AA R G PAEE + RE P C + Sbjct: 1183 STPSVPAAARAGPTPAEEVMEYREEGPECET 1213
>TPOR_HUMAN (P40238) Thrombopoietin receptor precursor (TPO-R)| (Myeloproliferative leukemia protein) (C-mpl) (CD110 antigen) Length = 635 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -1 Query: 111 SAGFSRPSAIAAGRGGTQPAEERVAAREPVPRCS 10 S G P +I GG+QP E +++ EP P S Sbjct: 129 SVGLPAPPSIIKAMGGSQPGELQISWEEPAPEIS 162
>SNE_ARATH (Q9LUB6) F-box protein SNE (Protein SNEEZY) (Sleepy protein 2)| Length = 157 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 125 DLLVEILSRVPYKSLCRFKCVSKRWRGI 208 D+LVEIL R+ SLC CV + W + Sbjct: 33 DVLVEILRRLDGSSLCSAACVCRLWSAV 60
>CLPB_STRCO (Q8CJV9) Chaperone clpB| Length = 865 Score = 30.0 bits (66), Expect = 1.5 Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 12/90 (13%) Frame = -3 Query: 337 REIVSRYRPPKPASLVDVA----RVE------EAGEVMEMVLRQRLAVVGVG--DDAAPP 194 R I SR+ P K LVD A R+E E E+ V R ++ + +G DAA Sbjct: 381 RYITSRFLPDKAIDLVDEAASRLRMEIDSSPVEIDELQRSVDRLKMEELAIGKETDAA-- 438 Query: 193 LGDALEAAQRLVRHARQDLDEEVFGELVRW 104 +LE +RL R D +EE+ G RW Sbjct: 439 ---SLERLERL-RRDLADKEEELRGLTARW 464
>FBX11_RAT (Q7TSL3) F-box only protein 11| Length = 843 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/50 (34%), Positives = 30/50 (60%) Frame = +2 Query: 71 LPAAMADGRLNPADKLTEDLLVEILSRVPYKSLCRFKCVSKRWRGIISHP 220 L AA A+ L +KL ++++++I S + + LCR CV KR+ + + P Sbjct: 62 LSAAPAEQYLQ--EKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDP 109
>FBX11_HUMAN (Q86XK2) F-box only protein 11 (Vitiligo-associated protein VIT-1)| Length = 843 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/50 (34%), Positives = 30/50 (60%) Frame = +2 Query: 71 LPAAMADGRLNPADKLTEDLLVEILSRVPYKSLCRFKCVSKRWRGIISHP 220 L AA A+ L +KL ++++++I S + + LCR CV KR+ + + P Sbjct: 62 LSAAPAEQYLQ--EKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDP 109
>COAE_RICCN (Q92GL2) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A| kinase) Length = 191 Score = 29.6 bits (65), Expect = 1.9 Identities = 10/56 (17%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Frame = +2 Query: 131 LVEILSRVPYKSLCRFKCVSKRWRGIISHPDHRKALPQ---YHLHDLAGFLYSSDV 289 +++ L+ YK+ C +C+ + ++ ++ K LP+ +++ ++ +Y++D+ Sbjct: 17 MLDYLTEKGYKTFCADRCIKELYQDVVLQTQILKLLPELESFNIRKISNLIYNNDL 72
>FBXL2_HUMAN (Q9UKC9) F-box/LRR-repeat protein 2 (F-box and leucine-rich repeat| protein 2) (F-box protein FBL2/FBL3) Length = 423 Score = 29.6 bits (65), Expect = 1.9 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Frame = +2 Query: 113 KLTEDLLVEILSRVPYKSLCRFKCVSKRWRGIISHPDHRKALPQYHLH-DLAGFLYSSDV 289 KL ++LL+ I S + +LCR +SK W + + + + ++ D+ G + + Sbjct: 14 KLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNFQIDVEGRVVENIS 73 Query: 290 DKAGWFGRPVSAHNFTGV 343 + G F R +S GV Sbjct: 74 KRCGGFLRKLSLRGCIGV 91
>RL15_RICFE (Q4UMR0) 50S ribosomal protein L15| Length = 153 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/21 (57%), Positives = 18/21 (85%) Frame = +2 Query: 80 AMADGRLNPADKLTEDLLVEI 142 A+ADGRL+ AD +T++ LVE+ Sbjct: 84 ALADGRLSAADTITKEKLVEV 104
>LCF2_YEAST (P39518) Long-chain-fatty-acid--CoA ligase 2 (EC 6.2.1.3)| (Long-chain acyl-CoA synthetase 2) (Fatty acid activator 2) Length = 744 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/67 (28%), Positives = 32/67 (47%) Frame = +2 Query: 95 RLNPADKLTEDLLVEILSRVPYKSLCRFKCVSKRWRGIISHPDHRKALPQYHLHDLAGFL 274 RL K +++ + E+ S++P S R+K K+ IS+PD+ + L+ Sbjct: 24 RLAGYTKGSDEYIEELYSQLPLTSYPRYKTFLKKQAVAISNPDNEAGFSSIYRSSLSSEN 83 Query: 275 YSSDVDK 295 S VDK Sbjct: 84 LVSCVDK 90
>ZN646_HUMAN (O15015) Zinc finger protein 646| Length = 1829 Score = 29.3 bits (64), Expect = 2.5 Identities = 25/85 (29%), Positives = 33/85 (38%) Frame = -1 Query: 273 RKPARSWRWYCGSALRWSGWEMMPRHRLETHLKRHSDLYGTRDRISTRRSSVSLSAGFSR 94 R+ RS R AL G R LE HL+ H + T R + G Sbjct: 1354 RRAGRSRRTAVRCAL--CGRSFPGRGSLERHLREHEE---------TEREPANGQGGLDG 1402 Query: 93 PSAIAAGRGGTQPAEERVAAREPVP 19 +A A G+Q E ++ EPVP Sbjct: 1403 TAASEANLTGSQGLETQLGGAEPVP 1427
>FBXL7_HUMAN (Q9UJT9) F-box/LRR-repeat protein 7 (F-box and leucine-rich repeat| protein 7) (F-box protein FBL6/FBL7) Length = 491 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +2 Query: 110 DKLTEDLLVEILSRVPYKSLCRFKCVSKRWRGIISHP 220 D+L + +V+I S +P LCR V +RW + P Sbjct: 115 DRLPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDP 151
>CLPB1_STRAW (Q82EU9) Chaperone clpB 1| Length = 870 Score = 29.3 bits (64), Expect = 2.5 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 10/88 (11%) Frame = -3 Query: 337 REIVSRYRPPKPASLVDVA----RVE------EAGEVMEMVLRQRLAVVGVGDDAAPPLG 188 R I SR+ P K LVD A R+E E E+ V R ++ + +G + Sbjct: 381 RYITSRFLPDKAIDLVDEAASRLRMEIDSSPVEIDELQRQVDRLKMEELAIGKETDAASR 440 Query: 187 DALEAAQRLVRHARQDLDEEVFGELVRW 104 + LE +R D +EE+ G RW Sbjct: 441 ERLEK----LRRDLADKEEELRGLTARW 464
>CDC4_CANAL (P53699) Cell division control protein 4| Length = 684 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = +2 Query: 125 DLLVEILSRVPYKSLCRFKCVSKRWRGIISHPD 223 ++ ++ILS + YK+L V K+W II++PD Sbjct: 221 EVTMKILSYLDYKTLLSVAQVCKKWFDIINNPD 253
>GID2_ARATH (Q9STX3) F-box protein GID2 (Protein SLEEPY1)| Length = 151 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 116 LTEDLLVEILSRVPYKSLCRFKCVSKRW 199 L E+L+ E+L V K+L CVSK W Sbjct: 35 LDENLVYEVLKHVDAKTLAMSSCVSKIW 62
>TRUA_STAAW (Q8NVB7) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 267 Score = 28.9 bits (63), Expect = 3.2 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Frame = +2 Query: 116 LTEDLLVEILSRVPYKSLCRFKCVSKRWRGIISHPDHRKALPQYHLHDLAGFLYSS-DVD 292 L +D+ V + V CR+ CV KR+R + HR L F+ + D+D Sbjct: 82 LPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQS----GLKTFIPETLDLD 137 Query: 293 KAGWFGRP-VSAHNFTG 340 K + + H+FTG Sbjct: 138 KMNRAAQQFIGTHDFTG 154
>TRUA_STAAS (Q6G7A2) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 267 Score = 28.9 bits (63), Expect = 3.2 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Frame = +2 Query: 116 LTEDLLVEILSRVPYKSLCRFKCVSKRWRGIISHPDHRKALPQYHLHDLAGFLYSS-DVD 292 L +D+ V + V CR+ CV KR+R + HR L F+ + D+D Sbjct: 82 LPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQS----GLKTFIPETLDLD 137 Query: 293 KAGWFGRP-VSAHNFTG 340 K + + H+FTG Sbjct: 138 KMNRAAQQFIGTHDFTG 154
>TRUA_STAAN (P65849) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 267 Score = 28.9 bits (63), Expect = 3.2 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Frame = +2 Query: 116 LTEDLLVEILSRVPYKSLCRFKCVSKRWRGIISHPDHRKALPQYHLHDLAGFLYSS-DVD 292 L +D+ V + V CR+ CV KR+R + HR L F+ + D+D Sbjct: 82 LPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQS----GLKTFIPETLDLD 137 Query: 293 KAGWFGRP-VSAHNFTG 340 K + + H+FTG Sbjct: 138 KMNRAAQQFIGTHDFTG 154
>TRUA_STAAM (P65848) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 267 Score = 28.9 bits (63), Expect = 3.2 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Frame = +2 Query: 116 LTEDLLVEILSRVPYKSLCRFKCVSKRWRGIISHPDHRKALPQYHLHDLAGFLYSS-DVD 292 L +D+ V + V CR+ CV KR+R + HR L F+ + D+D Sbjct: 82 LPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQS----GLKTFIPETLDLD 137 Query: 293 KAGWFGRP-VSAHNFTG 340 K + + H+FTG Sbjct: 138 KMNRAAQQFIGTHDFTG 154
>FBX46_HUMAN (Q6PJ61) F-box only protein 46 (F-box only protein 34-like)| Length = 646 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +2 Query: 116 LTEDLLVEILSRVPYKSLCRFKCVSKRWRGII 211 L E +LV+I S +P ++L KC ++GII Sbjct: 476 LPEHVLVKIFSFLPTRALAALKCTCHHFKGII 507
>FXL20_RAT (Q9QZH7) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 276 Score = 28.9 bits (63), Expect = 3.2 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Frame = +2 Query: 113 KLTEDLLVEILSRVPYKSLCRFKCVSKRWRGIISHPDHRKALPQYHL-HDLAGFLYSSDV 289 KL ++LL+ I S + +LCR VS+ W + + + + + D+ G + + Sbjct: 27 KLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENIS 86 Query: 290 DKAGWFGRPVSAHNFTGV 343 + G F R +S GV Sbjct: 87 KRCGGFLRKLSLRGCLGV 104
>FBX46_MOUSE (Q8BG80) F-box only protein 46 (F-box only protein 34-like)| Length = 603 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +2 Query: 116 LTEDLLVEILSRVPYKSLCRFKCVSKRWRGII 211 L E +LV+I S +P ++L KC ++GII Sbjct: 476 LPEHVLVKIFSFLPTRALAALKCTCHHFKGII 507
>FXL20_MOUSE (Q9CZV8) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 436 Score = 28.9 bits (63), Expect = 3.2 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Frame = +2 Query: 113 KLTEDLLVEILSRVPYKSLCRFKCVSKRWRGIISHPDHRKALPQYHL-HDLAGFLYSSDV 289 KL ++LL+ I S + +LCR VS+ W + + + + + D+ G + + Sbjct: 27 KLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENIS 86 Query: 290 DKAGWFGRPVSAHNFTGV 343 + G F R +S GV Sbjct: 87 KRCGGFLRKLSLRGCLGV 104
>FXL20_HUMAN (Q96IG2) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 436 Score = 28.9 bits (63), Expect = 3.2 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Frame = +2 Query: 113 KLTEDLLVEILSRVPYKSLCRFKCVSKRWRGIISHPDHRKALPQYHL-HDLAGFLYSSDV 289 KL ++LL+ I S + +LCR VS+ W + + + + + D+ G + + Sbjct: 27 KLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENIS 86 Query: 290 DKAGWFGRPVSAHNFTGV 343 + G F R +S GV Sbjct: 87 KRCGGFLRKLSLRGCLGV 104
>BRAC2_BRAFL (P80492) Brachyury protein homolog 2 (AmBra-2)| Length = 440 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/44 (36%), Positives = 19/44 (43%) Frame = +2 Query: 215 HPDHRKALPQYHLHDLAGFLYSSDVDKAGWFGRPVSAHNFTGVS 346 HP R + P + HD A L W G PVS HN +S Sbjct: 286 HPYQRSSPPTNYGHDTAASLPMMPTHD-NWSGLPVSTHNMLSMS 328
>TLE4_HUMAN (Q04727) Transducin-like enhancer protein 4| Length = 766 Score = 28.5 bits (62), Expect = 4.2 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 6/55 (10%) Frame = -1 Query: 177 KRHSDLYGTRDRISTRRSSVSLSAGF-----SRPSAIAAGRGGTQPAEER-VAAR 31 K+H D RDR S + SSVS SA F R SA + Q EE+ +AAR Sbjct: 181 KKHHDNDHQRDRDSIKSSSVSPSASFRGAEKHRNSADYSSESKKQKTEEKEIAAR 235
>POLG_HCVJ6 (P26660) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/31 (38%), Positives = 14/31 (45%) Frame = -1 Query: 291 STSLE*RKPARSWRWYCGSALRWSGWEMMPR 199 ST KP W Y L W+GW + PR Sbjct: 70 STGKSWGKPGYPWPLYGNEGLGWAGWLLSPR 100
>POLG_HCVJ5 (P27960) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70)] (Fragment) Length = 736 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/31 (38%), Positives = 14/31 (45%) Frame = -1 Query: 291 STSLE*RKPARSWRWYCGSALRWSGWEMMPR 199 ST KP W Y L W+GW + PR Sbjct: 70 STGKSWGKPGYPWPLYGNEGLGWAGWLLSPR 100
>ISPE_BARQU (Q6G0G3) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC| 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) Length = 302 Score = 28.5 bits (62), Expect = 4.2 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = -3 Query: 241 RQRLAVVGVGDDAAPPLGDALEAAQRLVRHARQDLDEEVFGELVRWIQPPV 89 RQ L V G+G D L +A A LV H +Q + VF L + PP+ Sbjct: 159 RQPLFVRGIGQDITQ-LKEACSLAMVLVNHGQQIATKAVFKALEKRDHPPL 208
>SM30_STRPU (P28163) 30 kDa spicule matrix protein precursor| Length = 290 Score = 28.5 bits (62), Expect = 4.2 Identities = 8/21 (38%), Positives = 12/21 (57%) Frame = -1 Query: 267 PARSWRWYCGSALRWSGWEMM 205 P W+WY G + ++ WE M Sbjct: 139 PTGQWQWYSGEPVTYTNWERM 159
>CDC21_ORYSA (P29618) Cell division control protein 2 homolog 1 (EC 2.7.11.22)| Length = 294 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +2 Query: 197 WRGIISHPDHRKALPQYHLHDLAGFLYSSD 286 W G+ S PD++ A P++ DLA + + D Sbjct: 228 WPGVSSLPDYKSAFPKWQAQDLATIVPTLD 257
>BRAC1_BRAFL (Q17134) Brachyury protein homolog 1 (AmBra-1)| Length = 448 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/44 (36%), Positives = 19/44 (43%) Frame = +2 Query: 215 HPDHRKALPQYHLHDLAGFLYSSDVDKAGWFGRPVSAHNFTGVS 346 HP R + P + HD A L W G PVS HN +S Sbjct: 294 HPYQRSSPPTNYGHDTAASLPMMPTHD-NWSGLPVSTHNMLSMS 336
>PTPS_METJA (Q58668) Putative 6-pyruvoyl tetrahydrobiopterin synthase (EC| 4.2.3.12) (PTPS) (PTP synthase) Length = 163 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +2 Query: 158 YKSLCRFKCVSKRWRGIISHPDHRKALPQYHLH 256 +K +C FK + K + I DH+ LP+ H H Sbjct: 48 FKFVCDFKIIKKIVKEICDELDHKLILPKNHEH 80
>TRUA_STAES (Q8CML6) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 267 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +2 Query: 116 LTEDLLVEILSRVPYKSLCRFKCVSKRWRGIISHPDHR 229 L +D+ V+ + V CR+ CV KR+R + +HR Sbjct: 82 LPDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNHR 119
>TRUA_STAEQ (Q5HM30) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 267 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +2 Query: 116 LTEDLLVEILSRVPYKSLCRFKCVSKRWRGIISHPDHR 229 L +D+ V+ + V CR+ CV KR+R + +HR Sbjct: 82 LPDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNHR 119
>ATP7B_HUMAN (P35670) Copper-transporting ATPase 2 (EC 3.6.3.4) (Copper pump 2)| (Wilson disease-associated protein) Length = 1465 Score = 28.1 bits (61), Expect = 5.5 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Frame = -3 Query: 286 VARVEEAGEVMEMVLRQRLAVVGVGDDAAP-PLGDALEAAQRLVRHARQDLDEEVFGELV 110 V RV G+V + LR+ LAVVG + ++ PLG A + ++ +++L E G Sbjct: 1039 VMRVLLLGDVATLPLRKVLAVVGTAEASSEHPLGVA------VTKYCKEELGTETLGYCT 1092 Query: 109 RWIQPPVC 86 + P C Sbjct: 1093 DFQAVPGC 1100
>TPOR_MOUSE (Q08351) Thrombopoietin receptor precursor (TPO-R)| (Myeloproliferative leukemia protein) (C-mpl) (CD110 antigen) Length = 625 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/34 (35%), Positives = 16/34 (47%) Frame = -1 Query: 111 SAGFSRPSAIAAGRGGTQPAEERVAAREPVPRCS 10 S G P + RGG+QP E ++ P P S Sbjct: 129 SVGLPAPPRVIKARGGSQPGELQIHWEAPAPEIS 162
>SM30A_STRPU (Q26646) 30 kDa spicule matrix protein-alpha precursor (SM30-alpha)| Length = 290 Score = 28.1 bits (61), Expect = 5.5 Identities = 8/21 (38%), Positives = 12/21 (57%) Frame = -1 Query: 267 PARSWRWYCGSALRWSGWEMM 205 P W+WY G + ++ WE M Sbjct: 139 PMGQWQWYSGEPVTYTNWERM 159
>TCPD_SCHPO (P50999) T-complex protein 1 subunit delta (TCP-1-delta)| (CCT-delta) Length = 527 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -3 Query: 259 VMEMVLRQRLAVVGVGDDAAPPLGDALEAAQRLVRHARQ 143 V+ +++QR + G G +EAAQRL+ HARQ Sbjct: 399 VIRCLVKQRALIAGGGSPE-------IEAAQRLLEHARQ 430
>SCN7A_HUMAN (Q01118) Sodium channel protein type 7 alpha subunit (Sodium| channel protein type VII alpha subunit) (Putative voltage-gated sodium channel alpha subunit Nax) (Sodium channel protein, cardiac and skeletal muscle alpha-subunit) Length = 1682 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/46 (23%), Positives = 24/46 (52%) Frame = +2 Query: 122 EDLLVEILSRVPYKSLCRFKCVSKRWRGIISHPDHRKALPQYHLHD 259 +DL++ + + + + + K K + + H D LP++H+HD Sbjct: 628 KDLVLLLFTFIFFSAAFGMKLFGKNYEEFVCHIDKDCQLPRWHMHD 673
>POLG_HCVSA (O91936) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3013 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/24 (37%), Positives = 12/24 (50%) Frame = -1 Query: 270 KPARSWRWYCGSALRWSGWEMMPR 199 +P W Y L W+GW + PR Sbjct: 77 QPGYPWPLYANEGLGWAGWLLSPR 100
>POLG_HCVEV (O39928) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3013 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/24 (37%), Positives = 12/24 (50%) Frame = -1 Query: 270 KPARSWRWYCGSALRWSGWEMMPR 199 +P W Y L W+GW + PR Sbjct: 77 QPGYPWPLYANEGLGWAGWLLSPR 100
>OC17_CHICK (Q9PRS8) Ovocleidin-17 (OC-17)| Length = 142 Score = 27.7 bits (60), Expect = 7.2 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = -1 Query: 264 ARSWRWYCGSALRWSGWEMMPRHR 193 +RSWRW G+A R++ W + R Sbjct: 85 SRSWRWSDGTAPRFASWHRTAKAR 108
>SOX3_MOUSE (P53784) Transcription factor SOX-3| Length = 375 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +2 Query: 209 ISHPDHRKALPQYHLHDLAGFLYS 280 +S P ALPQ H +D+AG YS Sbjct: 216 MSSPPPPPALPQMHRYDMAGLQYS 239
>CFXQ_XANFL (P23013) Protein cfxQ| Length = 317 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = +2 Query: 71 LPAAMADGRLNPADKLTEDLLVEILSRVPYKSLCRFKCVSKRWRGIISH 217 LPA A+GRL+ TE + E L+ + + L K V +R R I +H Sbjct: 13 LPAEAAEGRLDLGALFTESEVPEFLAELD-EGLIGLKPVKRRIREIAAH 60
>SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (Cell| death-related protein SPL11) Length = 694 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%) Frame = -3 Query: 244 LRQRLAVVGVGDD---AAPPLGDALEAAQRLVRHARQ 143 LR+R G G++ A PL DALEAA L+R R+ Sbjct: 70 LRERRRGEGEGEEEERALAPLADALEAALALLRLGRE 106
>RHAB_SHIFL (Q83IU3) Rhamnulokinase (EC 2.7.1.5) (Rhamnulose kinase)| Length = 489 Score = 27.3 bits (59), Expect = 9.4 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 31/121 (25%) Frame = +2 Query: 71 LPAAMADGRLNPADKLTEDLLV--EILSR-----VPYKSLCRFKCVSKRWRGIISHPDHR 229 LP A D R N + L +I R +P+ +L + + ++++ +I H H Sbjct: 98 LPVAYRDSRTNGLMPQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHA 157 Query: 230 KALPQYHLHDLAGFLY---------------SSDVDKA---------GWFGRPVSAHNFT 337 +P Y + L G + S D D++ WFGRP N Sbjct: 158 LLMPDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVI 217 Query: 338 G 340 G Sbjct: 218 G 218
>RHAB_ECOLI (P32171) Rhamnulokinase (EC 2.7.1.5) (Rhamnulose kinase)| Length = 489 Score = 27.3 bits (59), Expect = 9.4 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 31/121 (25%) Frame = +2 Query: 71 LPAAMADGRLNPADKLTEDLLV--EILSR-----VPYKSLCRFKCVSKRWRGIISHPDHR 229 LP A D R N + L +I R +P+ +L + + ++++ +I H H Sbjct: 98 LPVAYRDSRTNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHA 157 Query: 230 KALPQYHLHDLAGFLY---------------SSDVDKA---------GWFGRPVSAHNFT 337 +P Y + L G + S D D++ WFGRP N Sbjct: 158 LLMPDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVI 217 Query: 338 G 340 G Sbjct: 218 G 218
>RHAB_ECO57 (Q8X899) Rhamnulokinase (EC 2.7.1.5) (Rhamnulose kinase)| Length = 489 Score = 27.3 bits (59), Expect = 9.4 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 31/121 (25%) Frame = +2 Query: 71 LPAAMADGRLNPADKLTEDLLV--EILSR-----VPYKSLCRFKCVSKRWRGIISHPDHR 229 LP A D R N + L +I R +P+ +L + + ++++ +I H H Sbjct: 98 LPVAYRDSRTNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHA 157 Query: 230 KALPQYHLHDLAGFLY---------------SSDVDKA---------GWFGRPVSAHNFT 337 +P Y + L G + S D D++ WFGRP N Sbjct: 158 LLMPDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVI 217 Query: 338 G 340 G Sbjct: 218 G 218
>POLG_HCVBB (Q68749) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3036 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/31 (35%), Positives = 14/31 (45%) Frame = -1 Query: 291 STSLE*RKPARSWRWYCGSALRWSGWEMMPR 199 ST +P W Y L W+GW + PR Sbjct: 70 STGKSWGRPGYPWPLYRNEGLGWAGWLLSPR 100
>TRUA_ACIAD (Q6FEV2) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 271 Score = 27.3 bits (59), Expect = 9.4 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Frame = +2 Query: 113 KLTEDLLVEILSRVPYKSLCRFKCVSKRWRGIISHPDHRKALPQYHLHDLAGFLYSS-DV 289 +L +D+ ++ + + RFK ++R+R ++ + +R AL LH +Y + DV Sbjct: 84 QLPKDISIQWIKEMNTDFHARFKATARRYRYVVYNTLNRPAL----LHKQVTHVYQTLDV 139 Query: 290 DKAGWFGRPV-SAHNF 334 DK R HNF Sbjct: 140 DKMMLAARKFEGTHNF 155 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,447,601 Number of Sequences: 219361 Number of extensions: 822761 Number of successful extensions: 3366 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 3290 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3366 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
