ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27e21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_549824.1| Oryza sativa (japonica cultivar-group), mRNA 101 2e-18
2ref|NM_189643.1| Oryza sativa (japonica cultivar-group), Ozsa807... 101 2e-18
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
4dbj|AP002836.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
5dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
6dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
7dbj|AK070525.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
8dbj|AP002969.2| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
9gb|AC079600.19| Homo sapiens 12 BAC RP11-609L23 (Roswell Park Ca... 44 0.44
10gb|AC154514.2| Mus musculus BAC clone RP24-77G11 from chromosome... 42 1.7
11gb|AC104041.5| Homo sapiens chromosome 15, clone CTD-2034I4, com... 42 1.7
12gb|AC023034.9| Homo sapiens, clone RP11-499F3, complete sequence 42 1.7
13gb|AF327177.1|AF327177 Homo sapiens clone 20ptel_cA35_17t3 sequence 42 1.7
14gb|AC010885.8| Homo sapiens BAC clone RP11-368K23 from 2, comple... 42 1.7
15gb|AC104684.3| Homo sapiens BAC clone RP11-1N7 from 2, complete ... 42 1.7
16dbj|AP002833.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.7
17gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence 40 6.8
18gb|AC159455.1| Trypanosoma brucei chromosome 5 clone RPCI93-6E7,... 40 6.8
19gb|AC134790.6| Mus musculus chromosome 15, clone RP24-541O5, com... 40 6.8
20ref|XM_819896.1| Trypanosoma brucei TREU927 clone RPCI93-6E7 ATP... 40 6.8
21gb|AC125103.4| Mus musculus BAC clone RP24-218M19 from chromosom... 40 6.8
22gb|AC074390.6| Homo sapiens BAC clone RP11-515K14 from 7, comple... 40 6.8
23emb|AL391803.14| Human DNA sequence from clone RP13-25C19 on chr... 40 6.8
24gb|AC117668.9| Mus musculus, clone RP23-367H12, complete sequence 40 6.8
25dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome 40 6.8
26dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 40 6.8
27gb|AC128966.4| Rattus norvegicus BAC CH230-194D11 (Children's H... 40 6.8
28gb|AC154711.2| Mus musculus BAC clone RP24-359E16 from chromosom... 40 6.8
29gb|AC024061.7|AC024061 Homo sapiens chromosome 15 clone RP11-232... 40 6.8
30gb|AC007680.2| Homo sapiens BAC clone RP11-354L14 from 2, comple... 40 6.8
31gb|AC011361.4|AC011361 Homo sapiens chromosome 5 clone CTC-482N1... 40 6.8
32gb|AC090809.9| Homo sapiens chromosome 8, clone RP11-89G22, comp... 40 6.8
33gb|AC124076.5| Homo sapiens chromosome 8, clone RP11-962G15, com... 40 6.8
34emb|BX005203.7| Zebrafish DNA sequence from clone DKEY-110C1 in ... 40 6.8
35dbj|AP006205.1| Homo sapiens genomic DNA, chromosome 8, clone:RP... 40 6.8
36dbj|AP006204.1| Homo sapiens genomic DNA, chromosome 8, clone:RP... 40 6.8
37emb|CT025523.9| Mouse DNA sequence from clone RP23-73M18 on chro... 40 6.8
38gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 40 6.8
39dbj|AP000076.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 40 6.8 
>ref|XM_549824.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3483

 Score =  101 bits (51), Expect = 2e-18
 Identities = 129/155 (83%)
 Strand = Plus / Plus

                                                                        
Query: 14   ttttgtactgcattttctgtagatttctcaaatgtacctggcaattcagagccttgcagg 73
            ||||||| |||||||||||| ||||||||||| |||| | | | |   ||| ||||||||
Sbjct: 2158 ttttgtattgcattttctgtggatttctcaaaggtacatagtagtgtggagtcttgcagg 2217

                                                                        
Query: 74   cttcaagagagattttctcacgcttcaatcctacaagatttgcatcgaagagtagatagg 133
            |||| |||||| ||||||||||||||| |  |||||||||| |||  |||||| ||||||
Sbjct: 2218 cttccagagaggttttctcacgcttcagttgtacaagatttacatgaaagagtggatagg 2277

                                               
Query: 134  aatgatagccaagttttctcgcaactgcagcaatt 168
            | |||||||||| || | || |||||||| |||||
Sbjct: 2278 actgatagccaaattgtttcacaactgcaacaatt 2312



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                        
Query: 348  gagggatgcaacttctgtctggcattttgcagaggttcatggaactgcctttcgtgcttc 407
            ||||||||||| |||||||  ||||||| |||||| | |||||| |||| || || || |
Sbjct: 2499 gagggatgcaatttctgtccagcattttacagagggttatggaattgccatttgttctac 2558

                                   
Query: 408  ccagacacttcttcagcgtaagg 430
            ||| | |||||||||| ||||||
Sbjct: 2559 ccaaatacttcttcagagtaagg 2581
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>ref|NM_189643.1| Oryza sativa (japonica cultivar-group), Ozsa8071 predicted mRNA
          Length = 3582

 Score =  101 bits (51), Expect = 2e-18
 Identities = 129/155 (83%)
 Strand = Plus / Plus

                                                                        
Query: 14   ttttgtactgcattttctgtagatttctcaaatgtacctggcaattcagagccttgcagg 73
            ||||||| |||||||||||| ||||||||||| |||| | | | |   ||||||||||||
Sbjct: 2617 ttttgtattgcattttctgtggatttctcaaaggtacatagtagtgtggagccttgcagg 2676

                                                                        
Query: 74   cttcaagagagattttctcacgcttcaatcctacaagatttgcatcgaagagtagatagg 133
            |||| |||||| |||||||| |||||| |  |||||||||| |||  |||||| ||||||
Sbjct: 2677 cttccagagaggttttctcatgcttcagttgtacaagatttacatgaaagagtggatagg 2736

                                               
Query: 134  aatgatagccaagttttctcgcaactgcagcaatt 168
            | |||||||||| || | || |||||||| |||||
Sbjct: 2737 actgatagccaaattgtttcacaactgcaacaatt 2771



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                        
Query: 349  agggatgcaacttctgtctggcattttgcagaggttcatggaactgcctttcgtgcttcc 408
            |||||||||| |||||||   ||||||||||||| | |||||| |||| || || || ||
Sbjct: 2952 agggatgcaatttctgtccaacattttgcagagggttatggaattgccatttgttctacc 3011

                                                
Query: 409  cagacacttcttcagcgtaaggccttgccttggtgc 444
            || | |||||||||| |||||||||||| |||||||
Sbjct: 3012 caaatacttcttcagagtaaggccttgctttggtgc 3047



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                        
Query: 211  cacaagaatgaatttgtcaggtaaactggaaaaggattcctattcactcttcaagtttgc 270
            ||||||||||||||  |||||||  |||||||||||||| |||   || | |||||||||
Sbjct: 2814 cacaagaatgaattgttcaggtattctggaaaaggattcttatcgtctttgcaagtttgc 2873

                              
Query: 271  tgtggcatctttgcttcg 288
            |||||||| |||||||||
Sbjct: 2874 tgtggcatatttgcttcg 2891
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  101 bits (51), Expect = 2e-18
 Identities = 129/155 (83%)
 Strand = Plus / Minus

                                                                           
Query: 14      ttttgtactgcattttctgtagatttctcaaatgtacctggcaattcagagccttgcagg 73
               ||||||| |||||||||||| ||||||||||| |||| | | | |   ||||||||||||
Sbjct: 4732240 ttttgtattgcattttctgtggatttctcaaaggtacatagtagtgtggagccttgcagg 4732181

                                                                           
Query: 74      cttcaagagagattttctcacgcttcaatcctacaagatttgcatcgaagagtagatagg 133
               |||| |||||| |||||||| |||||| |  |||||||||| |||  |||||| ||||||
Sbjct: 4732180 cttccagagaggttttctcatgcttcagttgtacaagatttacatgaaagagtggatagg 4732121

                                                  
Query: 134     aatgatagccaagttttctcgcaactgcagcaatt 168
               | |||||||||| || | || |||||||| |||||
Sbjct: 4732120 actgatagccaaattgtttcacaactgcaacaatt 4732086



 Score =  101 bits (51), Expect = 2e-18
 Identities = 129/155 (83%)
 Strand = Plus / Plus

                                                                          
Query: 14     ttttgtactgcattttctgtagatttctcaaatgtacctggcaattcagagccttgcagg 73
              ||||||| |||||||||||| ||||||||||| |||| | | | |   ||| ||||||||
Sbjct: 193962 ttttgtattgcattttctgtggatttctcaaaggtacatagtagtgtggagtcttgcagg 194021

                                                                          
Query: 74     cttcaagagagattttctcacgcttcaatcctacaagatttgcatcgaagagtagatagg 133
              |||| |||||| ||||||||||||||| |  |||||||||| |||  |||||| ||||||
Sbjct: 194022 cttccagagaggttttctcacgcttcagttgtacaagatttacatgaaagagtggatagg 194081

                                                 
Query: 134    aatgatagccaagttttctcgcaactgcagcaatt 168
              | |||||||||| || | || |||||||| |||||
Sbjct: 194082 actgatagccaaattgtttcacaactgcaacaatt 194116



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                           
Query: 211     cacaagaatgaatttgtcaggtaaactggaaaaggattcctattcactcttcaagtttgc 270
               ||||||||||||||  |||||||  |||||||||||||| |||   || | |||||||||
Sbjct: 4732043 cacaagaatgaattgttcaggtattctggaaaaggattcttatcgtctttgcaagtttgc 4731984

                                 
Query: 271     tgtggcatctttgcttcg 288
               |||||||| |||||||||
Sbjct: 4731983 tgtggcatatttgcttcg 4731966



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                          
Query: 348    gagggatgcaacttctgtctggcattttgcagaggttcatggaactgcctttcgtgcttc 407
              ||||||||||| |||||||  ||||||| |||||| | |||||| |||| || || || |
Sbjct: 194303 gagggatgcaatttctgtccagcattttacagagggttatggaattgccatttgttctac 194362

                                     
Query: 408    ccagacacttcttcagcgtaagg 430
              ||| | |||||||||| ||||||
Sbjct: 194363 ccaaatacttcttcagagtaagg 194385



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 68/82 (82%)
 Strand = Plus / Minus

                                                                           
Query: 349     agggatgcaacttctgtctggcattttgcagaggttcatggaactgcctttcgtgcttcc 408
               |||||||||| |||||||   ||||||||||||| | |||||| |||| || || || ||
Sbjct: 4731905 agggatgcaatttctgtccaacattttgcagagggttatggaattgccatttgttctacc 4731846

                                     
Query: 409     cagacacttcttcagcgtaagg 430
               || | |||||||||| ||||||
Sbjct: 4731845 caaatacttcttcagagtaagg 4731824
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>dbj|AP002836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0512G09
          Length = 146921

 Score =  101 bits (51), Expect = 2e-18
 Identities = 129/155 (83%)
 Strand = Plus / Minus

                                                                         
Query: 14    ttttgtactgcattttctgtagatttctcaaatgtacctggcaattcagagccttgcagg 73
             ||||||| |||||||||||| ||||||||||| |||| | | | |   ||||||||||||
Sbjct: 92485 ttttgtattgcattttctgtggatttctcaaaggtacatagtagtgtggagccttgcagg 92426

                                                                         
Query: 74    cttcaagagagattttctcacgcttcaatcctacaagatttgcatcgaagagtagatagg 133
             |||| |||||| |||||||| |||||| |  |||||||||| |||  |||||| ||||||
Sbjct: 92425 cttccagagaggttttctcatgcttcagttgtacaagatttacatgaaagagtggatagg 92366

                                                
Query: 134   aatgatagccaagttttctcgcaactgcagcaatt 168
             | |||||||||| || | || |||||||| |||||
Sbjct: 92365 actgatagccaaattgtttcacaactgcaacaatt 92331



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                         
Query: 211   cacaagaatgaatttgtcaggtaaactggaaaaggattcctattcactcttcaagtttgc 270
             ||||||||||||||  |||||||  |||||||||||||| |||   || | |||||||||
Sbjct: 92288 cacaagaatgaattgttcaggtattctggaaaaggattcttatcgtctttgcaagtttgc 92229

                               
Query: 271   tgtggcatctttgcttcg 288
             |||||||| |||||||||
Sbjct: 92228 tgtggcatatttgcttcg 92211



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 68/82 (82%)
 Strand = Plus / Minus

                                                                         
Query: 349   agggatgcaacttctgtctggcattttgcagaggttcatggaactgcctttcgtgcttcc 408
             |||||||||| |||||||   ||||||||||||| | |||||| |||| || || || ||
Sbjct: 92150 agggatgcaatttctgtccaacattttgcagagggttatggaattgccatttgttctacc 92091

                                   
Query: 409   cagacacttcttcagcgtaagg 430
             || | |||||||||| ||||||
Sbjct: 92090 caaatacttcttcagagtaagg 92069
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>dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0695A04
          Length = 158133

 Score =  101 bits (51), Expect = 2e-18
 Identities = 129/155 (83%)
 Strand = Plus / Minus

                                                                          
Query: 14     ttttgtactgcattttctgtagatttctcaaatgtacctggcaattcagagccttgcagg 73
              ||||||| |||||||||||| ||||||||||| |||| | | | |   ||||||||||||
Sbjct: 139456 ttttgtattgcattttctgtggatttctcaaaggtacatagtagtgtggagccttgcagg 139397

                                                                          
Query: 74     cttcaagagagattttctcacgcttcaatcctacaagatttgcatcgaagagtagatagg 133
              |||| |||||| |||||||| |||||| |  |||||||||| |||  |||||| ||||||
Sbjct: 139396 cttccagagaggttttctcatgcttcagttgtacaagatttacatgaaagagtggatagg 139337

                                                 
Query: 134    aatgatagccaagttttctcgcaactgcagcaatt 168
              | |||||||||| || | || |||||||| |||||
Sbjct: 139336 actgatagccaaattgtttcacaactgcaacaatt 139302



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                          
Query: 211    cacaagaatgaatttgtcaggtaaactggaaaaggattcctattcactcttcaagtttgc 270
              ||||||||||||||  |||||||  |||||||||||||| |||   || | |||||||||
Sbjct: 139259 cacaagaatgaattgttcaggtattctggaaaaggattcttatcgtctttgcaagtttgc 139200

                                
Query: 271    tgtggcatctttgcttcg 288
              |||||||| |||||||||
Sbjct: 139199 tgtggcatatttgcttcg 139182



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 68/82 (82%)
 Strand = Plus / Minus

                                                                          
Query: 349    agggatgcaacttctgtctggcattttgcagaggttcatggaactgcctttcgtgcttcc 408
              |||||||||| |||||||   ||||||||||||| | |||||| |||| || || || ||
Sbjct: 139121 agggatgcaatttctgtccaacattttgcagagggttatggaattgccatttgttctacc 139062

                                    
Query: 409    cagacacttcttcagcgtaagg 430
              || | |||||||||| ||||||
Sbjct: 139061 caaatacttcttcagagtaagg 139040
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>dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0436E04
          Length = 144644

 Score =  101 bits (51), Expect = 2e-18
 Identities = 129/155 (83%)
 Strand = Plus / Plus

                                                                         
Query: 14    ttttgtactgcattttctgtagatttctcaaatgtacctggcaattcagagccttgcagg 73
             ||||||| |||||||||||| ||||||||||| |||| | | | |   ||| ||||||||
Sbjct: 35632 ttttgtattgcattttctgtggatttctcaaaggtacatagtagtgtggagtcttgcagg 35691

                                                                         
Query: 74    cttcaagagagattttctcacgcttcaatcctacaagatttgcatcgaagagtagatagg 133
             |||| |||||| ||||||||||||||| |  |||||||||| |||  |||||| ||||||
Sbjct: 35692 cttccagagaggttttctcacgcttcagttgtacaagatttacatgaaagagtggatagg 35751

                                                
Query: 134   aatgatagccaagttttctcgcaactgcagcaatt 168
             | |||||||||| || | || |||||||| |||||
Sbjct: 35752 actgatagccaaattgtttcacaactgcaacaatt 35786



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                         
Query: 348   gagggatgcaacttctgtctggcattttgcagaggttcatggaactgcctttcgtgcttc 407
             ||||||||||| |||||||  ||||||| |||||| | |||||| |||| || || || |
Sbjct: 35973 gagggatgcaatttctgtccagcattttacagagggttatggaattgccatttgttctac 36032

                                    
Query: 408   ccagacacttcttcagcgtaagg 430
             ||| | |||||||||| ||||||
Sbjct: 36033 ccaaatacttcttcagagtaagg 36055
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>dbj|AK070525.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061E16, full
            insert sequence
          Length = 3482

 Score =  101 bits (51), Expect = 2e-18
 Identities = 129/155 (83%)
 Strand = Plus / Plus

                                                                        
Query: 14   ttttgtactgcattttctgtagatttctcaaatgtacctggcaattcagagccttgcagg 73
            ||||||| |||||||||||| ||||||||||| |||| | | | |   ||| ||||||||
Sbjct: 2157 ttttgtattgcattttctgtggatttctcaaaggtacatagtagtgtggagtcttgcagg 2216

                                                                        
Query: 74   cttcaagagagattttctcacgcttcaatcctacaagatttgcatcgaagagtagatagg 133
            |||| |||||| ||||||||||||||| |  |||||||||| |||  |||||| ||||||
Sbjct: 2217 cttccagagaggttttctcacgcttcagttgtacaagatttacatgaaagagtggatagg 2276

                                               
Query: 134  aatgatagccaagttttctcgcaactgcagcaatt 168
            | |||||||||| || | || |||||||| |||||
Sbjct: 2277 actgatagccaaattgtttcacaactgcaacaatt 2311



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                        
Query: 348  gagggatgcaacttctgtctggcattttgcagaggttcatggaactgcctttcgtgcttc 407
            ||||||||||| |||||||  ||||||| |||||| | |||||| |||| || || || |
Sbjct: 2498 gagggatgcaatttctgtccagcattttacagagggttatggaattgccatttgttctac 2557

                                   
Query: 408  ccagacacttcttcagcgtaagg 430
            ||| | |||||||||| ||||||
Sbjct: 2558 ccaaatacttcttcagagtaagg 2580
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>dbj|AP002969.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0455C04
          Length = 147940

 Score =  101 bits (51), Expect = 2e-18
 Identities = 129/155 (83%)
 Strand = Plus / Plus

                                                                          
Query: 14     ttttgtactgcattttctgtagatttctcaaatgtacctggcaattcagagccttgcagg 73
              ||||||| |||||||||||| ||||||||||| |||| | | | |   ||| ||||||||
Sbjct: 142508 ttttgtattgcattttctgtggatttctcaaaggtacatagtagtgtggagtcttgcagg 142567

                                                                          
Query: 74     cttcaagagagattttctcacgcttcaatcctacaagatttgcatcgaagagtagatagg 133
              |||| |||||| ||||||||||||||| |  |||||||||| |||  |||||| ||||||
Sbjct: 142568 cttccagagaggttttctcacgcttcagttgtacaagatttacatgaaagagtggatagg 142627

                                                 
Query: 134    aatgatagccaagttttctcgcaactgcagcaatt 168
              | |||||||||| || | || |||||||| |||||
Sbjct: 142628 actgatagccaaattgtttcacaactgcaacaatt 142662



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                          
Query: 348    gagggatgcaacttctgtctggcattttgcagaggttcatggaactgcctttcgtgcttc 407
              ||||||||||| |||||||  ||||||| |||||| | |||||| |||| || || || |
Sbjct: 142849 gagggatgcaatttctgtccagcattttacagagggttatggaattgccatttgttctac 142908

                                     
Query: 408    ccagacacttcttcagcgtaagg 430
              ||| | |||||||||| ||||||
Sbjct: 142909 ccaaatacttcttcagagtaagg 142931
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>gb|AC079600.19| Homo sapiens 12 BAC RP11-609L23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 158395

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 468   accctgtaaacaagaacaggat 489
             ||||||||||||||||||||||
Sbjct: 32006 accctgtaaacaagaacaggat 31985
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>gb|AC154514.2| Mus musculus BAC clone RP24-77G11 from chromosome 9, complete sequence
          Length = 188944

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 167   ttcatttctgtttcttcttat 187
             |||||||||||||||||||||
Sbjct: 73610 ttcatttctgtttcttcttat 73630
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>gb|AC104041.5| Homo sapiens chromosome 15, clone CTD-2034I4, complete sequence
          Length = 188519

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 161    cagcaattcatttctgtttct 181
              |||||||||||||||||||||
Sbjct: 146453 cagcaattcatttctgtttct 146473



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 161    cagcaattcatttctgtttct 181
              |||||||||||||||||||||
Sbjct: 100549 cagcaattcatttctgtttct 100569
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>gb|AC023034.9| Homo sapiens, clone RP11-499F3, complete sequence
          Length = 189732

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 161   cagcaattcatttctgtttct 181
             |||||||||||||||||||||
Sbjct: 13529 cagcaattcatttctgtttct 13549
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>gb|AF327177.1|AF327177 Homo sapiens clone 20ptel_cA35_17t3 sequence
          Length = 738

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 165 aattcatttctgtttcttctt 185
           |||||||||||||||||||||
Sbjct: 608 aattcatttctgtttcttctt 628
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>gb|AC010885.8| Homo sapiens BAC clone RP11-368K23 from 2, complete sequence
          Length = 177385

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 170   atttctgtttcttcttatgag 190
             |||||||||||||||||||||
Sbjct: 92170 atttctgtttcttcttatgag 92190
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>gb|AC104684.3| Homo sapiens BAC clone RP11-1N7 from 2, complete sequence
          Length = 129770

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   aattcatttctgtttcttctt 185
             |||||||||||||||||||||
Sbjct: 58278 aattcatttctgtttcttctt 58258
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>dbj|AP002833.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-688I9, complete
              sequence
          Length = 175562

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 359    cttctgtctggcattttgcag 379
              |||||||||||||||||||||
Sbjct: 109544 cttctgtctggcattttgcag 109524
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>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
          Length = 1608198

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 445     cgagctcttcatgttcgatt 464
               ||||||||||||||||||||
Sbjct: 1125275 cgagctcttcatgttcgatt 1125294
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>gb|AC159455.1| Trypanosoma brucei chromosome 5 clone RPCI93-6E7, complete sequence
          Length = 170328

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 445   cgagctcttcatgttcgatt 464
             ||||||||||||||||||||
Sbjct: 56378 cgagctcttcatgttcgatt 56397
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>gb|AC134790.6| Mus musculus chromosome 15, clone RP24-541O5, complete sequence
          Length = 185593

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 167    ttcatttctgtttcttcttatgag 190
              ||||||||||||||||||| ||||
Sbjct: 145037 ttcatttctgtttcttcttttgag 145014
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>ref|XM_819896.1| Trypanosoma brucei TREU927 clone RPCI93-6E7 ATP-dependent DEAD/H
           RNA helicase (Tb927.5.3600) partial mRNA
          Length = 2847

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 445 cgagctcttcatgttcgatt 464
           ||||||||||||||||||||
Sbjct: 83  cgagctcttcatgttcgatt 102
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>gb|AC125103.4| Mus musculus BAC clone RP24-218M19 from chromosome 3, complete sequence
          Length = 184917

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 263   aagtttgctgtggcatctttgctt 286
             |||||||||||||| |||||||||
Sbjct: 29192 aagtttgctgtggcttctttgctt 29215
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>gb|AC074390.6| Homo sapiens BAC clone RP11-515K14 from 7, complete sequence
          Length = 111722

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   gcaactgcagcaattcattt 173
             ||||||||||||||||||||
Sbjct: 61491 gcaactgcagcaattcattt 61472
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>emb|AL391803.14| Human DNA sequence from clone RP13-25C19 on chromosome X Contains the
             3' end of the gene for novel protein similar to
             rab11-binding protein (DKFZp686L20145), complete sequence
          Length = 117951

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 71    aggcttcaagagagattttctcac 94
             ||||||| ||||||||||||||||
Sbjct: 85831 aggcttctagagagattttctcac 85808
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>gb|AC117668.9| Mus musculus, clone RP23-367H12, complete sequence
          Length = 221526

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 353   atgcaacttctgtctggcattttg 376
             |||||||||||||||| |||||||
Sbjct: 97267 atgcaacttctgtctgccattttg 97244
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>dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome
          Length = 1166239

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 172     ttctgtttcttcttatgagc 191
               ||||||||||||||||||||
Sbjct: 1111479 ttctgtttcttcttatgagc 1111498
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 143     caagttttctcgcaactgcagcaa 166
               |||||| |||||||||||||||||
Sbjct: 1554035 caagttgtctcgcaactgcagcaa 1554058
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>gb|AC128966.4| Rattus norvegicus  BAC CH230-194D11 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 214096

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    aattcatttctgtttcttct 184
              ||||||||||||||||||||
Sbjct: 144116 aattcatttctgtttcttct 144135
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>gb|AC154711.2| Mus musculus BAC clone RP24-359E16 from chromosome 16, complete sequence
          Length = 199681

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 24     cattttctgtagatttctcaaatg 47
              |||||||| |||||||||||||||
Sbjct: 142568 cattttctttagatttctcaaatg 142545
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>gb|AC024061.7|AC024061 Homo sapiens chromosome 15 clone RP11-232J12 map 15q21.3, complete
             sequence
          Length = 157042

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   atttctgtttcttcttatga 189
             ||||||||||||||||||||
Sbjct: 35186 atttctgtttcttcttatga 35205
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>gb|AC007680.2| Homo sapiens BAC clone RP11-354L14 from 2, complete sequence
          Length = 146333

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     tgcattttctgtagatttct 41
              ||||||||||||||||||||
Sbjct: 105988 tgcattttctgtagatttct 106007
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>gb|AC011361.4|AC011361 Homo sapiens chromosome 5 clone CTC-482N19, complete sequence
          Length = 189893

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    attcatttctgtttcttctt 185
              ||||||||||||||||||||
Sbjct: 124212 attcatttctgtttcttctt 124193
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>gb|AC090809.9| Homo sapiens chromosome 8, clone RP11-89G22, complete sequence
          Length = 170261

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     tgcattttctgtagatttct 41
              ||||||||||||||||||||
Sbjct: 145515 tgcattttctgtagatttct 145534
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>gb|AC124076.5| Homo sapiens chromosome 8, clone RP11-962G15, complete sequence
          Length = 183098

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     tgcattttctgtagatttct 41
              ||||||||||||||||||||
Sbjct: 158980 tgcattttctgtagatttct 158961
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>emb|BX005203.7| Zebrafish DNA sequence from clone DKEY-110C1 in linkage group 22,
              complete sequence
          Length = 214843

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     tgcattttctgtagatttct 41
              ||||||||||||||||||||
Sbjct: 154728 tgcattttctgtagatttct 154709
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>dbj|AP006205.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-441L16, complete
             sequence
          Length = 157665

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    tgcattttctgtagatttct 41
             ||||||||||||||||||||
Sbjct: 72451 tgcattttctgtagatttct 72470
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>dbj|AP006204.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-112G7, complete
             sequence
          Length = 169075

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    tgcattttctgtagatttct 41
             ||||||||||||||||||||
Sbjct: 10096 tgcattttctgtagatttct 10115
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>emb|CT025523.9| Mouse DNA sequence from clone RP23-73M18 on chromosome 14, complete
              sequence
          Length = 200375

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 353    atgcaacttctgtctggcattttg 376
              |||||||||||||||| |||||||
Sbjct: 154729 atgcaacttctgtctgccattttg 154706
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 143   caagttttctcgcaactgcagcaa 166
             |||||| |||||||||||||||||
Sbjct: 66848 caagttgtctcgcaactgcagcaa 66825
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>dbj|AP000076.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region,
             section 12/19
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    tgcattttctgtagatttct 41
             ||||||||||||||||||||
Sbjct: 47482 tgcattttctgtagatttct 47463


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,169,792
Number of Sequences: 3902068
Number of extensions: 5169792
Number of successful extensions: 103324
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103145
Number of HSP's gapped (non-prelim): 175
length of query: 504
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 482
effective length of database: 17,147,199,772
effective search space: 8264950290104
effective search space used: 8264950290104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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