ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27e17 |
|---|---|
| Clone Library Name | barley_pub |
>SMD2_DROME (Q9VI10) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core| protein D2) (Sm-D2) Length = 119 Score = 98.2 bits (243), Expect = 1e-20 Identities = 44/51 (86%), Positives = 49/51 (96%) Frame = +3 Query: 345 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMW 497 F+TGPLS+L SVKNNTQVLINCRNNKKLLGR++AFDRHCNMVLENV+EMW Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 73
>SMD2_MOUSE (P62317) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 118 Score = 98.2 bits (243), Expect = 1e-20 Identities = 44/51 (86%), Positives = 49/51 (96%) Frame = +3 Query: 345 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMW 497 F+TGPLS+L SVKNNTQVLINCRNNKKLLGR++AFDRHCNMVLENV+EMW Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 74
>SMD2_HUMAN (P62316) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 118 Score = 98.2 bits (243), Expect = 1e-20 Identities = 44/51 (86%), Positives = 49/51 (96%) Frame = +3 Query: 345 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMW 497 F+TGPLS+L SVKNNTQVLINCRNNKKLLGR++AFDRHCNMVLENV+EMW Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 74
>SMD2_CAEEL (Q18786) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core| protein D2) (Sm-D2) Length = 118 Score = 93.2 bits (230), Expect = 3e-19 Identities = 42/51 (82%), Positives = 47/51 (92%) Frame = +3 Query: 345 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMW 497 F+ GPLS+L SVKNN QVLINCRNNKKLLGR++AFDRHCNMVLENV+EMW Sbjct: 24 FNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 74
>SMD2_SCHPO (O14036) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core| protein D2) (Sm-D2) Length = 115 Score = 86.3 bits (212), Expect = 4e-17 Identities = 39/51 (76%), Positives = 45/51 (88%) Frame = +3 Query: 345 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMW 497 FS GPLS+L +VKN+ QVLINCRNNKKLL R++AFDRH NMVLENV+EMW Sbjct: 25 FSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMW 75
>SMD2_YEAST (Q06217) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 110 Score = 67.4 bits (163), Expect = 2e-11 Identities = 28/51 (54%), Positives = 40/51 (78%) Frame = +3 Query: 345 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMW 497 F GP+SL+ ++ T V+I+ RNN K++ R++AFDRHCNMVLENV+E+W Sbjct: 26 FKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELW 76
>SMD2_PIG (Q29329) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) (Fragment) Length = 50 Score = 40.0 bits (92), Expect = 0.003 Identities = 18/27 (66%), Positives = 20/27 (74%) Frame = +3 Query: 345 FSTGPLSLLMMSVKNNTQVLINCRNNK 425 F+TGPLS+ S K TQVLINCRN K Sbjct: 24 FNTGPLSVXTQSXKTXTQVLINCRNTK 50
>LSM3_MOUSE (P62311) U6 snRNA-associated Sm-like protein LSm3| Length = 101 Score = 40.0 bits (92), Expect = 0.003 Identities = 17/45 (37%), Positives = 32/45 (71%) Frame = +3 Query: 357 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVRE 491 PL L+ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E Sbjct: 16 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 58
>LSM3_HUMAN (P62310) U6 snRNA-associated Sm-like protein LSm3| Length = 101 Score = 40.0 bits (92), Expect = 0.003 Identities = 17/45 (37%), Positives = 32/45 (71%) Frame = +3 Query: 357 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVRE 491 PL L+ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E Sbjct: 16 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 58
>LSM3_YEAST (P57743) U6 snRNA-associated Sm-like protein LSm3 (SmX4 protein)| Length = 89 Score = 36.6 bits (83), Expect = 0.038 Identities = 18/45 (40%), Positives = 29/45 (64%) Frame = +3 Query: 357 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVRE 491 PL LL +++ + +V I R + L+G ++AFD HCN+VL + E Sbjct: 4 PLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE 46
>LSM3_SCHPO (Q9Y7M4) Probable U6 snRNA-associated Sm-like protein LSm3| Length = 93 Score = 34.7 bits (78), Expect = 0.14 Identities = 17/46 (36%), Positives = 29/46 (63%) Frame = +3 Query: 357 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREM 494 PL L+ +S+ + V + R +++L GR+ A+D H NMVL + E+ Sbjct: 10 PLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEI 53
>RUXX_THEVO (Q97BU5) Putative snRNP Sm-like protein| Length = 83 Score = 31.6 bits (70), Expect = 1.2 Identities = 15/49 (30%), Positives = 30/49 (61%) Frame = +3 Query: 348 STGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREM 494 +T P+ +L ++ N VLI+ + N++ G + +D + N+VL+N E+ Sbjct: 7 NTKPMDVLKNALSRN--VLIDVKGNREYSGILEGYDVYMNVVLQNASEI 53
>RUXX_METMA (Q8PZZ9) Putative snRNP Sm-like protein| Length = 72 Score = 31.6 bits (70), Expect = 1.2 Identities = 13/46 (28%), Positives = 28/46 (60%) Frame = +3 Query: 357 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREM 494 PL +L ++ +T V++ + ++ G ++ +D H N+VL+N E+ Sbjct: 5 PLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL 48
>RUXX_METAC (Q8TL47) Putative snRNP Sm-like protein| Length = 72 Score = 31.6 bits (70), Expect = 1.2 Identities = 13/46 (28%), Positives = 28/46 (60%) Frame = +3 Query: 357 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREM 494 PL +L ++ +T V++ + ++ G ++ +D H N+VL+N E+ Sbjct: 5 PLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL 48
>RUXG_MEDSA (P24715) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm| protein G) (Sm-G) (SmG) Length = 81 Score = 31.6 bits (70), Expect = 1.2 Identities = 12/33 (36%), Positives = 23/33 (69%) Frame = +3 Query: 396 QVLINCRNNKKLLGRMRAFDRHCNMVLENVREM 494 Q+ IN + N+ ++G +R FD+ N+V++N E+ Sbjct: 17 QLQINLKANRMIVGTLRGFDQFMNLVVDNTVEV 49
>RUXX_METTH (O26745) Putative snRNP Sm-like protein| Length = 81 Score = 31.2 bits (69), Expect = 1.6 Identities = 15/46 (32%), Positives = 28/46 (60%) Frame = +3 Query: 357 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREM 494 PL L S+ N+ V+I + +++ G +++FD H N+VL + E+ Sbjct: 14 PLDALGNSL--NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL 57
>SYL_WOLSU (Q7M926) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 819 Score = 31.2 bits (69), Expect = 1.6 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +2 Query: 332 GGGGVQHRAPVPAHDERQEQYPGTYQLPEQQ 424 G G V VPAHDER ++ YQLP++Q Sbjct: 339 GSGAVM---AVPAHDERDFEFAKKYQLPQKQ 366
>HXA1_RAT (O08656) Homeobox protein Hox-A1| Length = 333 Score = 31.2 bits (69), Expect = 1.6 Identities = 21/68 (30%), Positives = 27/68 (39%) Frame = +2 Query: 257 GLFPFRRSPASIRADGGRSSCQCEEGGGGVQHRAPVPAHDERQEQYPGTYQLPEQQEATW 436 G+ F+ S + GG GG GVQ +P H P TYQ ++ Sbjct: 33 GITTFQSCAVSANSCGGDDRFL---GGRGVQITSPHHHHHHHHHPQPATYQTSGNLGVSY 89 Query: 437 SHESI*PS 460 SH S PS Sbjct: 90 SHSSCGPS 97
>RUXX_THEAC (P57670) Putative snRNP Sm-like protein| Length = 83 Score = 30.4 bits (67), Expect = 2.7 Identities = 14/46 (30%), Positives = 28/46 (60%) Frame = +3 Query: 357 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREM 494 P+ +L ++ N VLI+ + N++ G + +D + N+VL+N E+ Sbjct: 10 PMDVLKSALSRN--VLIDVKGNREYSGILEGYDVYMNIVLQNASEI 53
>LSM5_MOUSE (P62322) U6 snRNA-associated Sm-like protein LSm5| Length = 90 Score = 30.0 bits (66), Expect = 3.6 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = +3 Query: 348 STGPLSLLMMSVKNN---TQVLINCRNNKKLLGRMRAFDRHCNMVLENVRE 491 +T P LL + + + +++ I +++K+++G + FD NMVLE+V E Sbjct: 5 TTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 55
>LSM5_HUMAN (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm5| Length = 90 Score = 30.0 bits (66), Expect = 3.6 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = +3 Query: 348 STGPLSLLMMSVKNN---TQVLINCRNNKKLLGRMRAFDRHCNMVLENVRE 491 +T P LL + + + +++ I +++K+++G + FD NMVLE+V E Sbjct: 5 TTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 55
>YB18_SCHPO (P87173) Hypothetical protein C3D6.08c in chromosome II| Length = 140 Score = 30.0 bits (66), Expect = 3.6 Identities = 11/28 (39%), Positives = 22/28 (78%) Frame = +3 Query: 396 QVLINCRNNKKLLGRMRAFDRHCNMVLE 479 +V++ R+ KKL+G +R+FD+ N++L+ Sbjct: 23 KVIVVLRDGKKLIGILRSFDQFANLMLQ 50
>SYL_FUSNN (Q8RIQ3) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 859 Score = 29.6 bits (65), Expect = 4.7 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +2 Query: 362 VPAHDERQEQYPGTYQLPEQQEAT 433 VPAHDER + G Y LP +Q T Sbjct: 340 VPAHDERDFVFAGKYNLPVKQVIT 363
>SYL_CHRVO (Q7P0R1) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 872 Score = 29.6 bits (65), Expect = 4.7 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +2 Query: 362 VPAHDERQEQYPGTYQLPEQQ 424 VPAHDER ++ YQLP +Q Sbjct: 342 VPAHDERDFEFANKYQLPIKQ 362
>CAS_DROME (Q7M3M8) Transcription factor castor (Protein ming)| Length = 793 Score = 29.3 bits (64), Expect = 6.1 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = -3 Query: 302 HRRESKPVTCGRETNQISSNPNSLLAIPAQQEPGVTGRTVAAPSSRTGKL 153 H+R S T + S N N L+A QQ PG T T + P+S L Sbjct: 77 HKRISSQNTNCSSSRSCSPNSN-LIAFQPQQYPGATAATPSTPNSHPSNL 125
>SEMG2_ATEGE (Q5U7M7) Semenogelin-2 precursor (Semenogelin II) (SGII)| Length = 514 Score = 29.3 bits (64), Expect = 6.1 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +2 Query: 329 EGGGGVQHRAPVPAHDERQEQYPGTYQLPEQQEATWSHE 445 +G V+H PV AHD Q + Y L Q + T S + Sbjct: 60 KGSASVEHTYPVDAHDHDQTRKSKQYDLNAQNKTTKSEK 98
>RS10_DICDI (O77082) 40S ribosomal protein S10| Length = 153 Score = 29.3 bits (64), Expect = 6.1 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = +2 Query: 362 VPAHDERQEQYPGTYQLPEQQEATWSHESI*PSLQHGSRER*GD 493 VPA ++Q P TY E+ + T + PS G R + GD Sbjct: 88 VPATMKKQASRPSTYTRSEETKRTGASGDFDPSFNRGDRRQGGD 131
>SYL_NEIMA (Q9JW39) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 910 Score = 29.3 bits (64), Expect = 6.1 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +2 Query: 362 VPAHDERQEQYPGTYQLPEQQ 424 VPAHDER ++ Y LP++Q Sbjct: 347 VPAHDERDFEFAAKYSLPKKQ 367
>CPSF7_RAT (Q5XI29) Cleavage and polyadenylation specificity factor 7| Length = 462 Score = 28.9 bits (63), Expect = 7.9 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -2 Query: 342 PPPPSSHWQLLLPPSARI 289 PPPP H+Q L+PP R+ Sbjct: 247 PPPPGIHYQHLMPPPPRL 264
>RSMB_DROME (Q05856) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 199 Score = 28.9 bits (63), Expect = 7.9 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = +3 Query: 390 NTQVLINCRNNKKLLGRMRAFDRHCNMVLENVRE 491 N +V I ++++ +G +AFD+H N++L + E Sbjct: 14 NYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEE 47
>SYL_DESPS (Q6AJZ7) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 827 Score = 28.9 bits (63), Expect = 7.9 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 326 EEGGGGVQHRAPVPAHDERQEQYPGTYQLP 415 E G G V VPAHD+R ++ G Y+LP Sbjct: 336 EYGTGAVM---AVPAHDQRDFEFAGKYKLP 362
>CPSF7_MOUSE (Q8BTV2) Cleavage and polyadenylation specificity factor 7| Length = 471 Score = 28.9 bits (63), Expect = 7.9 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -2 Query: 342 PPPPSSHWQLLLPPSARI 289 PPPP H+Q L+PP R+ Sbjct: 256 PPPPGIHYQHLMPPPPRL 273
>CPSF7_HUMAN (Q8N684) Cleavage and polyadenylation specificity factor 7| (Cleavage and polyadenylation specificity factor 59 kDa subunit) (CPSF 59 kDa subunit) (Pre-mRNA cleavage factor Im 59-kDa subunit) Length = 471 Score = 28.9 bits (63), Expect = 7.9 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -2 Query: 342 PPPPSSHWQLLLPPSARI 289 PPPP H+Q L+PP R+ Sbjct: 256 PPPPGIHYQHLMPPPPRL 273 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,417,436 Number of Sequences: 219361 Number of extensions: 1563930 Number of successful extensions: 4619 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 4384 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4614 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
