ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor 30 1.9
2SYNP2_MOUSE (Q91YE8) Synaptopodin-2 (Myopodin) 30 1.9
3SYNP2_HUMAN (Q9UMS6) Synaptopodin-2 (Myopodin) (Genethonin 2) 29 2.5
45E5_RAT (Q63003) 5E5 antigen 28 4.2
5K1683_HUMAN (Q9H0B3) Protein KIAA1683 28 5.5
6PKHA4_MOUSE (Q8VC98) Pleckstrin homology domain-containing famil... 28 7.2
7MOK13_SCHPO (Q9Y719) Cell wall alpha-1,3-glucan synthase mok13 (... 27 9.4

>PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor|
          Length = 261

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/28 (57%), Positives = 16/28 (57%)
 Frame = -2

Query: 163 PQLVFPQGPPWVEVNIPRPASGPCLPPP 80
           PQL  PQGPP      PRP  GP  PPP
Sbjct: 142 PQLRPPQGPPPPAGPQPRPPQGP--PPP 167



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>SYNP2_MOUSE (Q91YE8) Synaptopodin-2 (Myopodin)|
          Length = 1087

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 9/39 (23%)
 Frame = -2

Query: 166 SPQLVFPQGPPWVEVNIP---------RPASGPCLPPPW 77
           SP   FP  PP+  V+ P          P +GP  PPPW
Sbjct: 603 SPISDFPAPPPYSAVSPPPEAFSRGVSSPVAGPAQPPPW 641



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>SYNP2_HUMAN (Q9UMS6) Synaptopodin-2 (Myopodin) (Genethonin 2)|
          Length = 1093

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 9/39 (23%)
 Frame = -2

Query: 166 SPQLVFPQGPPWVEVNIP---------RPASGPCLPPPW 77
           SP   FP  PP+  V  P          P +GP  PPPW
Sbjct: 611 SPIADFPAPPPYSAVTPPPDAFSRGVSSPIAGPAQPPPW 649



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>5E5_RAT (Q63003) 5E5 antigen|
          Length = 825

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 166 SPQLVFPQGPPWVEVNIPRPASGPCLPPP 80
           SP+  FP G P  E  +PRP + P  P P
Sbjct: 138 SPEGAFPGGGPAEEEGVPRPRAPPEPPDP 166



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>K1683_HUMAN (Q9H0B3) Protein KIAA1683|
          Length = 1180

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -2

Query: 229 QLVRFQYPSEEQLRPQCS**ISPQLVF---PQGPPWVEVNIPRPASGPCLPPP 80
           Q VRFQ+P E +L       +SP ++     Q P    + + RP S P L PP
Sbjct: 169 QQVRFQHPEENRL-------LSPPIMVNKETQFPSCDNLVLCRPQSSPLLQPP 214



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>PKHA4_MOUSE (Q8VC98) Pleckstrin homology domain-containing family A member 4|
           (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1)
          Length = 588

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 166 SPQLVFPQGPPWVEVNIPRPASGPCLPPP 80
           SP+L  P   P   +++PRP S P   PP
Sbjct: 229 SPELFSPLSRPPSPLSLPRPRSAPARRPP 257



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>MOK13_SCHPO (Q9Y719) Cell wall alpha-1,3-glucan synthase mok13 (EC 2.4.1.183)|
          Length = 2358

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -3

Query: 342  SFLRSLIAFLCGRNGFFRFWLFHLRSFTFFLNRSSGLISW*GFSILLRNNFGHSARSRFL 163
            SFL   I+     N + R W+ H+ S+ + +  +SG       S+    NFG  A +  +
Sbjct: 2001 SFLLIGISSFINENMYLRLWISHIASWIYAVASASG-------SLYFSLNFGDEAGAG-V 2052

Query: 162  LSW 154
            +SW
Sbjct: 2053 VSW 2055


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.310    0.123    0.325 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,906,335
Number of Sequences: 219361
Number of extensions: 618646
Number of successful extensions: 1334
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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