ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27e07 |
|---|---|
| Clone Library Name | barley_pub |
>COX12_SCHPO (O94581) Cytochrome c oxidase polypeptide VIb (EC 1.9.3.1)| Length = 83 Score = 92.0 bits (227), Expect = 1e-18 Identities = 36/58 (62%), Positives = 46/58 (79%) Frame = +1 Query: 385 FRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECEKFAKYYRSLCPSEWVERWNEQREN 558 +RFP TNQT+HCF Y++Y RC+ AKG+D C++F Y+SLCP EWVERW+EQREN Sbjct: 19 YRFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQREN 76
>COX12_YEAST (Q01519) Cytochrome c oxidase polypeptide VIb (EC 1.9.3.1) (AED)| Length = 82 Score = 82.0 bits (201), Expect = 1e-15 Identities = 31/58 (53%), Positives = 43/58 (74%) Frame = +1 Query: 382 DFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECEKFAKYYRSLCPSEWVERWNEQRE 555 D RFP NQT+HC+ YV+YH+CV KG+D C+ F K Y +LCP +W+E+W++QRE Sbjct: 14 DARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWIEKWDDQRE 71
>CX6B1_PONPY (Q5RCT0) Cytochrome c oxidase subunit VIb isoform 1 (EC 1.9.3.1)| (COX VIb-1) Length = 85 Score = 75.9 bits (185), Expect = 7e-14 Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 3/63 (4%) Frame = +1 Query: 373 APADFRFPTTNQTRHCFTRYVEYHRC---VAAKGDDAPECEKFAKYYRSLCPSEWVERWN 543 AP D RFP NQTR+C+ Y+++HRC + AKG D CE + + Y+SLCP+ WV W+ Sbjct: 14 APFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWD 73 Query: 544 EQR 552 EQR Sbjct: 74 EQR 76
>CX6B1_HUMAN (P14854) Cytochrome c oxidase subunit VIb isoform 1 (EC 1.9.3.1)| (COX VIb-1) Length = 85 Score = 75.9 bits (185), Expect = 7e-14 Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 3/63 (4%) Frame = +1 Query: 373 APADFRFPTTNQTRHCFTRYVEYHRC---VAAKGDDAPECEKFAKYYRSLCPSEWVERWN 543 AP D RFP NQTR+C+ Y+++HRC + AKG D CE + + Y+SLCP+ WV W+ Sbjct: 14 APFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWD 73 Query: 544 EQR 552 EQR Sbjct: 74 EQR 76
>CX6B1_TARSY (Q7YRK6) Cytochrome c oxidase subunit VIb isoform 1 (EC 1.9.3.1)| (COX VIb-1) Length = 85 Score = 73.6 bits (179), Expect = 4e-13 Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 3/63 (4%) Frame = +1 Query: 373 APADFRFPTTNQTRHCFTRYVEYHRC---VAAKGDDAPECEKFAKYYRSLCPSEWVERWN 543 AP D RFP NQTR+C+ Y+++HRC + AKG D CE + + Y+SLCP WV W+ Sbjct: 14 APFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWD 73 Query: 544 EQR 552 ++R Sbjct: 74 DRR 76
>CX6B1_BOVIN (P00429) Cytochrome c oxidase subunit VIb isoform 1 (EC 1.9.3.1)| (COX VIb-1) (Cytochrome c oxidase polypeptide VII) (Cytochrome c oxidase subunit AED) Length = 85 Score = 73.6 bits (179), Expect = 4e-13 Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 3/63 (4%) Frame = +1 Query: 373 APADFRFPTTNQTRHCFTRYVEYHRC---VAAKGDDAPECEKFAKYYRSLCPSEWVERWN 543 AP D RFP NQTR+C+ Y+++HRC + AKG D CE + + Y+SLCP WV W+ Sbjct: 14 APFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWD 73 Query: 544 EQR 552 ++R Sbjct: 74 DRR 76
>CX6B1_MACMU (Q53CG4) Cytochrome c oxidase subunit VIb isoform 1 (EC 1.9.3.1)| (COX VIb-1) Length = 86 Score = 72.8 bits (177), Expect = 6e-13 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 3/63 (4%) Frame = +1 Query: 373 APADFRFPTTNQTRHCFTRYVEYHRCVAA---KGDDAPECEKFAKYYRSLCPSEWVERWN 543 AP D RFP NQTR+C+ Y+++HRC A KG + CE + + Y+SLCP+ WV W+ Sbjct: 15 APFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLCPTSWVTDWD 74 Query: 544 EQR 552 EQR Sbjct: 75 EQR 77
>CX6B1_MACFA (Q4R374) Cytochrome c oxidase subunit VIb isoform 1 (EC 1.9.3.1)| (COX VIb-1) Length = 86 Score = 72.8 bits (177), Expect = 6e-13 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 3/63 (4%) Frame = +1 Query: 373 APADFRFPTTNQTRHCFTRYVEYHRCVAA---KGDDAPECEKFAKYYRSLCPSEWVERWN 543 AP D RFP NQTR+C+ Y+++HRC A KG + CE + + Y+SLCP+ WV W+ Sbjct: 15 APFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLCPTSWVTDWD 74 Query: 544 EQR 552 EQR Sbjct: 75 EQR 77
>CX6B2_MOUSE (Q80ZN9) Cytochrome c oxidase subunit VIb isoform 2 (EC 1.9.3.1)| (COX VIb-2) (Cytochrome c oxidase subunit VIb, testis-specific isoform) Length = 88 Score = 71.6 bits (174), Expect = 1e-12 Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 3/61 (4%) Frame = +1 Query: 376 PADFRFPTTNQTRHCFTRYVEYHRCVAA---KGDDAPECEKFAKYYRSLCPSEWVERWNE 546 P D RFP NQTR+C+ +++YHRCV +G CE + + + SLCP WV+RWNE Sbjct: 18 PFDPRFPNQNQTRNCYQNFLDYHRCVKTMNRRGKSTQPCEYYFRVFHSLCPISWVQRWNE 77 Query: 547 Q 549 Q Sbjct: 78 Q 78
>CX6B2_RAT (Q6YFQ1) Cytochrome c oxidase subunit VIb isoform 2 (EC 1.9.3.1)| (COX VIb-2) (Cytochrome c oxidase subunit VIb, testis-specific isoform) Length = 88 Score = 70.9 bits (172), Expect = 2e-12 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 3/61 (4%) Frame = +1 Query: 376 PADFRFPTTNQTRHCFTRYVEYHRCVAA---KGDDAPECEKFAKYYRSLCPSEWVERWNE 546 P D RFP NQTR+C+ +++YHRCV +G + C+ + + + SLCP WV+RWNE Sbjct: 18 PFDPRFPNQNQTRNCYQNFLDYHRCVKTMDRRGKNTQACDYYFRVFHSLCPVSWVQRWNE 77 Query: 547 Q 549 Q Sbjct: 78 Q 78
>CX6B2_HUMAN (Q6YFQ2) Cytochrome c oxidase subunit VIb isoform 2 (EC 1.9.3.1)| (COX VIb-2) (Cytochrome c oxidase subunit VIb, testis-specific isoform) Length = 88 Score = 70.5 bits (171), Expect = 3e-12 Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 3/64 (4%) Frame = +1 Query: 376 PADFRFPTTNQTRHCFTRYVEYHRCVAAK---GDDAPECEKFAKYYRSLCPSEWVERWNE 546 P D RFP+ NQ R+C+ +++YHRC+ + G CE + + Y SLCP WVE WNE Sbjct: 18 PFDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYFRVYHSLCPISWVESWNE 77 Query: 547 QREN 558 Q +N Sbjct: 78 QIKN 81
>CX6B2_BOVIN (Q6YFP9) Cytochrome c oxidase subunit VIb isoform 2 (EC 1.9.3.1)| (COX VIb-2) (Cytochrome c oxidase subunit VIb, testis-specific isoform) Length = 88 Score = 70.5 bits (171), Expect = 3e-12 Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 3/61 (4%) Frame = +1 Query: 376 PADFRFPTTNQTRHCFTRYVEYHRCVAA---KGDDAPECEKFAKYYRSLCPSEWVERWNE 546 P D RFP NQTR+C+ +++YHRC+ +G CE + + Y SLCP WV+RW E Sbjct: 18 PFDPRFPNQNQTRNCYQNFLDYHRCIKTMNRRGKSTQPCEYYFRVYHSLCPISWVQRWKE 77 Query: 547 Q 549 Q Sbjct: 78 Q 78
>CX6B1_MOUSE (P56391) Cytochrome c oxidase subunit VIb isoform 1 (EC 1.9.3.1)| (COX VIb-1) Length = 85 Score = 70.5 bits (171), Expect = 3e-12 Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 3/62 (4%) Frame = +1 Query: 373 APADFRFPTTNQTRHCFTRYVEYHRC---VAAKGDDAPECEKFAKYYRSLCPSEWVERWN 543 AP D RFP NQT++C+ Y+++HRC + AKG D CE + + Y+SLCP WV W+ Sbjct: 14 APFDSRFPNQNQTKNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPVSWVSAWD 73 Query: 544 EQ 549 ++ Sbjct: 74 DR 75
>CIN_DROME (P39205) Molybdenum cofactor synthesis protein cinnamon| Length = 674 Score = 34.3 bits (77), Expect = 0.24 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 9/63 (14%) Frame = +1 Query: 391 FPTTNQTRHCFTRYVEYHRCV--------AAKGDDAPE-CEKFAKYYRSLCPSEWVERWN 543 FP + + C+ EY +C+ + G+ P C+ K + CP +WV+ ++ Sbjct: 3 FPDKAERKKCWNNRDEYWKCLEEHAPKHSSTSGEKVPTPCQSLRKSFEQSCPGQWVKHFD 62 Query: 544 EQR 552 +R Sbjct: 63 RKR 65
>HST6_CANAL (P53706) ATP-dependent permease HST6 (STE6 homolog)| Length = 1323 Score = 30.0 bits (66), Expect = 4.6 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Frame = -1 Query: 378 WSCLNHN---FWFLFSFLRSLIAFLCGRNGFFRFWLFHLRSFTFFLNRSSGLISW*GF 214 WSC++ + F + S+L I CG N W+ LR TFF + L + GF Sbjct: 722 WSCISLSIAIFTGVTSYLSEFILNYCGEN-----WIVSLRQLTFFKLNNQDLSFFTGF 774
>PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor| Length = 261 Score = 29.6 bits (65), Expect = 6.0 Identities = 16/28 (57%), Positives = 16/28 (57%) Frame = -3 Query: 163 PQLVFPQGPPWVEVNIPRPASGPCLPPP 80 PQL PQGPP PRP GP PPP Sbjct: 142 PQLRPPQGPPPPAGPQPRPPQGP--PPP 167
>SYNP2_MOUSE (Q91YE8) Synaptopodin-2 (Myopodin)| Length = 1087 Score = 29.6 bits (65), Expect = 6.0 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 9/39 (23%) Frame = -3 Query: 166 SPQLVFPQGPPWVEVNIP---------RPASGPCLPPPW 77 SP FP PP+ V+ P P +GP PPPW Sbjct: 603 SPISDFPAPPPYSAVSPPPEAFSRGVSSPVAGPAQPPPW 641
>SYNP2_HUMAN (Q9UMS6) Synaptopodin-2 (Myopodin) (Genethonin 2)| Length = 1093 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 9/39 (23%) Frame = -3 Query: 166 SPQLVFPQGPPWVEVNIP---------RPASGPCLPPPW 77 SP FP PP+ V P P +GP PPPW Sbjct: 611 SPIADFPAPPPYSAVTPPPDAFSRGVSSPIAGPAQPPPW 649
>EGFR_DROME (P04412) Epidermal growth factor receptor precursor (EC 2.7.10.1)| (Egfr) (Gurken receptor) (Protein torpedo) (Drosophila relative of ERBB) Length = 1426 Score = 29.3 bits (64), Expect = 7.8 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = +1 Query: 376 PADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECEKF 492 PAD T + R CF R+ E + C DD C F Sbjct: 774 PADHY--TDEEQRECFQRHPECNGCTGPGADDCKSCRNF 810
>TRI5_GIBPU (P27679) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 383 Score = 29.3 bits (64), Expect = 7.8 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 17/62 (27%) Frame = +1 Query: 394 PTTNQTRHCFTR-YVEYHRC----------VAAKGDDAPECEKFAKYYR------SLCPS 522 P T CF YV +H C KG + EKF K+Y ++ PS Sbjct: 282 PQVMDTIECFMHGYVTWHLCDHRYRLNEIYEKVKGQKTEDAEKFCKFYEQAANVGAVSPS 341 Query: 523 EW 528 EW Sbjct: 342 EW 343 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.129 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,548,693 Number of Sequences: 219361 Number of extensions: 1250771 Number of successful extensions: 3667 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3461 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3652 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
