ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27e05 |
|---|---|
| Clone Library Name | barley_pub |
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 145 bits (365), Expect = 7e-35 Identities = 69/160 (43%), Positives = 107/160 (66%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPRE 180 +FGKYG +TD IMKD T RGFGF++F PS +D+V++ +H +DG+ ++ KR +PR+ Sbjct: 178 YFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD 237 Query: 181 EMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFE 360 E KT KIFVGG+ + + + FS +G +++ Q+M+D TG+SRGFGFVT++ Sbjct: 238 EQD-----KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYD 292 Query: 361 SEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNG 480 S D+V+RV + + D +++EIK+AEP+ S+NG Sbjct: 293 SADAVDRV-CQNKFIDFKDRKIEIKRAEPRHMQQKSSNNG 331 Score = 78.6 bits (192), Expect = 9e-15 Identities = 43/96 (44%), Positives = 61/96 (63%), Gaps = 1/96 (1%) Frame = +1 Query: 166 TVPREEMSSKDGPKTR-KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGF 342 T +EE S D K K+F+GGL TED+LR++F YG V + +IM D +TGRSRGF Sbjct: 143 TQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGF 202 Query: 343 GFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 GF++FE SV+ V+ + D GK ++ K+A P+ Sbjct: 203 GFLSFEKPSSVDEVVKTQHILD--GKVIDPKRAIPR 236
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 145 bits (365), Expect = 7e-35 Identities = 79/160 (49%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLED-EHNIDGRTVEVKRTVPR 177 +F ++G I D V+MK+ + RGFGFVTF+DP+ ++ VL++ H +DGRT++ K PR Sbjct: 26 YFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPR 85 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 K G K+F+GGLPS +TE DLR F+ YG V E IM D +SRGFGF++F Sbjct: 86 TLQKPKKGGGY-KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSF 144 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSN 477 E E SVE V +E R +L GKQVEIKKAEP+ G +SN Sbjct: 145 EEESSVEHVTNE-RYINLNGKQVEIKKAEPRDGSGGQNSN 183 Score = 62.8 bits (151), Expect = 5e-10 Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 6/89 (6%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 K+FVGGL T+++L +F +G++++ +M ++ +GRSRGFGFVTF +V V+ Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67 Query: 394 GRMRDLGGKQVEIKKA------EPKKHGG 462 G L G+ ++ K +PKK GG Sbjct: 68 G-PHTLDGRTIDPKPCNPRTLQKPKKGGG 95
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 143 bits (361), Expect = 2e-34 Identities = 72/163 (44%), Positives = 103/163 (63%), Gaps = 2/163 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 HF K+G I D V+MKD TK RGFGF+T+S S+ID+ + H IDGR VE KR VPR Sbjct: 50 HFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPR 109 Query: 178 EEMSSKD-GPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 +++ S + G +K+FVG L E +RD+F +GN+V+ I++D TG+ RGF FV Sbjct: 110 QDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVE 169 Query: 355 FESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGR 483 F+ D V++V+ + + L GK V++KKA PK++ GR Sbjct: 170 FDDYDPVDKVVLQ-KQHQLNGKMVDVKKALPKQNDQQGGGGGR 211 Score = 68.2 bits (165), Expect = 1e-11 Identities = 31/81 (38%), Positives = 51/81 (62%) Frame = +1 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 RK+F+GGL T+++L+ HF +GN+V+ +M D T RSRGFGF+T+ ++ Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEA-Q 89 Query: 391 EGRMRDLGGKQVEIKKAEPKK 453 + R + G+ VE K+A P++ Sbjct: 90 KSRPHKIDGRVVEPKRAVPRQ 110
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 135 bits (339), Expect = 8e-32 Identities = 70/163 (42%), Positives = 103/163 (63%), Gaps = 1/163 (0%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVL-EDEHNIDGRTVEVKRTVPR 177 +F K+G I + ++M+D TK RGFGFVTF+DP+ +DKVL + H +D +T++ K PR Sbjct: 40 YFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPR 99 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 K +T+KIFVGGL + +D++ +F +G V + +M D +T R RGFGFVTF Sbjct: 100 RAQP-KMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGRS 486 E+ED VE+V E ++ K VE KKA+PK+ + GR+ Sbjct: 159 ENEDVVEKV-CEIHFHEINNKMVECKKAQPKEVMFPPGTRGRA 200 Score = 67.4 bits (163), Expect = 2e-11 Identities = 34/80 (42%), Positives = 51/80 (63%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 K+F+GGL + D LRD+FS +G + E +M D +T RSRGFGFVTF SV++V+ + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81 Query: 394 GRMRDLGGKQVEIKKAEPKK 453 +L K ++ K A P++ Sbjct: 82 PH-HELDSKTIDPKVAFPRR 100
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 135 bits (339), Expect = 8e-32 Identities = 70/163 (42%), Positives = 103/163 (63%), Gaps = 1/163 (0%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVL-EDEHNIDGRTVEVKRTVPR 177 +F K+G I + ++M+D TK RGFGFVTF+DP+ +DKVL + H +D +T++ K PR Sbjct: 40 YFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPR 99 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 K +T+KIFVGGL + +D++ +F +G V + +M D +T R RGFGFVTF Sbjct: 100 RAQP-KMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGRS 486 E+ED VE+V E ++ K VE KKA+PK+ + GR+ Sbjct: 159 ENEDVVEKV-CEIHFHEINNKMVECKKAQPKEVMFPPGTRGRA 200 Score = 67.4 bits (163), Expect = 2e-11 Identities = 34/80 (42%), Positives = 51/80 (63%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 K+F+GGL + D LRD+FS +G + E +M D +T RSRGFGFVTF SV++V+ + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81 Query: 394 GRMRDLGGKQVEIKKAEPKK 453 +L K ++ K A P++ Sbjct: 82 PH-HELDSKTIDPKVAFPRR 100
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 132 bits (333), Expect = 4e-31 Identities = 72/164 (43%), Positives = 103/164 (62%), Gaps = 2/164 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVL-EDEHNIDGRTVEVKRTVPR 177 +FG++G + + ++M+D TK RGFGFVTF D + +DKVL + H +D +T++ K PR Sbjct: 39 YFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR 98 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 K +T+KIFVGGL T +D++ +F +G V + +M D +T R RGFGFVTF Sbjct: 99 RAQP-KMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAEPKK-HGGDHSSNGRS 486 ESED VE+V E ++ K VE KKA+PK+ S+ GRS Sbjct: 158 ESEDIVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRS 200 Score = 69.3 bits (168), Expect = 5e-12 Identities = 37/95 (38%), Positives = 59/95 (62%), Gaps = 1/95 (1%) Frame = +1 Query: 172 PREEMSSKDGPKTR-KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 P+ ++S D P K+F+GGL T++ LR++F +G V E +M D T RSRGFGF Sbjct: 6 PQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGF 65 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 VTF + V++V+++ R +L K ++ K A P++ Sbjct: 66 VTFMDQAGVDKVLAQSR-HELDSKTIDPKVAFPRR 99
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 132 bits (332), Expect = 5e-31 Identities = 72/164 (43%), Positives = 103/164 (62%), Gaps = 2/164 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVL-EDEHNIDGRTVEVKRTVPR 177 +FG++G + + ++M+D TK RGFGFVTF D + +DKVL + H +D +T++ K PR Sbjct: 39 YFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR 98 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 K +T+KIFVGGL T +D++ +F +G V + +M D +T R RGFGFVTF Sbjct: 99 RAQP-KMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAEPKK-HGGDHSSNGRS 486 ESED VE+V E ++ K VE KKA+PK+ S+ GRS Sbjct: 158 ESEDIVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRS 200 Score = 69.3 bits (168), Expect = 5e-12 Identities = 37/95 (38%), Positives = 59/95 (62%), Gaps = 1/95 (1%) Frame = +1 Query: 172 PREEMSSKDGPKTR-KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 P+ ++S D P K+F+GGL T++ LR++F +G V E +M D T RSRGFGF Sbjct: 6 PQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGF 65 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 VTF + V++V+++ R +L K ++ K A P++ Sbjct: 66 VTFMDQAGVDKVLAQSR-HELDSKTIDPKVAFPRR 99
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 132 bits (332), Expect = 5e-31 Identities = 72/164 (43%), Positives = 103/164 (62%), Gaps = 2/164 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVL-EDEHNIDGRTVEVKRTVPR 177 +FG++G + + ++M+D TK RGFGFVTF D + +DKVL + H +D +T++ K PR Sbjct: 39 YFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR 98 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 K +T+KIFVGGL T +D++ +F +G V + +M D +T R RGFGFVTF Sbjct: 99 RAQP-KMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAEPKK-HGGDHSSNGRS 486 ESED VE+V E ++ K VE KKA+PK+ S+ GRS Sbjct: 158 ESEDIVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRS 200 Score = 69.3 bits (168), Expect = 5e-12 Identities = 37/95 (38%), Positives = 59/95 (62%), Gaps = 1/95 (1%) Frame = +1 Query: 172 PREEMSSKDGPKTR-KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 P+ ++S D P K+F+GGL T++ LR++F +G V E +M D T RSRGFGF Sbjct: 6 PQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGF 65 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 VTF + V++V+++ R +L K ++ K A P++ Sbjct: 66 VTFMDQAGVDKVLAQSR-HELDSKTIDPKVAFPRR 99
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 132 bits (331), Expect = 7e-31 Identities = 71/164 (43%), Positives = 96/164 (58%), Gaps = 3/164 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 HF ++G I D V+MKD TK RGFGF+T+S ++D H +DGR VE KR VPR Sbjct: 36 HFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNARPHKVDGRVVEPKRAVPR 95 Query: 178 EEMSSKD-GPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 E+ + G +K+FVGG+ + E+DLRD+F YG VV I+VD T + RGF FV Sbjct: 96 TEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVE 155 Query: 355 FESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHG-GDHSSNGR 483 F+ D V++ I R + GK +++KKA PK G GR Sbjct: 156 FDDYDPVDK-ICLSRNHQIRGKHIDVKKALPKGDAPGGRGGGGR 198 Score = 64.7 bits (156), Expect = 1e-10 Identities = 32/84 (38%), Positives = 48/84 (57%) Frame = +1 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 RK+F+GGL T++ L+ HF +G +V+ +M D T RSRGFGF+T+ V+ Sbjct: 17 RKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDA-Q 75 Query: 391 EGRMRDLGGKQVEIKKAEPKKHGG 462 R + G+ VE K+A P+ G Sbjct: 76 NARPHKVDGRVVEPKRAVPRTEIG 99
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 128 bits (321), Expect = 9e-30 Identities = 67/164 (40%), Positives = 95/164 (57%), Gaps = 14/164 (8%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 +F +YG + D VIMKDK T RGFGFV F DP+ + VL H +DGR ++ K PR Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88 Query: 178 -------------EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 ++ D K+ KIFVGG+P E +LR++F +G V E ++ D Sbjct: 89 GMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA 148 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 R RGFGF+TFE E SV++ ++ D+ GK+VE+K+AEP+ Sbjct: 149 EKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPR 191 Score = 67.4 bits (163), Expect = 2e-11 Identities = 35/89 (39%), Positives = 54/89 (60%) Frame = +1 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 M++ + K+FVGGL + T++ LR +FS YG VV+ IM D +T +SRGFGFV F+ Sbjct: 1 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60 Query: 364 EDSVERVISEGRMRDLGGKQVEIKKAEPK 450 + V V++ R L G+ ++ K P+ Sbjct: 61 PNCVGTVLA-SRPHTLDGRNIDPKPCTPR 88 Score = 60.1 bits (144), Expect = 3e-09 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 +F K+G +T+ V++ D + PRGFGF+TF D +D+ + H+I G+ VEVKR PR Sbjct: 132 YFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191 Query: 178 EEMSSKDG 201 + S G Sbjct: 192 DSKSQAPG 199
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 128 bits (321), Expect = 9e-30 Identities = 67/164 (40%), Positives = 95/164 (57%), Gaps = 14/164 (8%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 +F +YG + D VIMKDK T RGFGFV F DP+ + VL H +DGR ++ K PR Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88 Query: 178 -------------EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 ++ D K+ KIFVGG+P E +LR++F +G V E ++ D Sbjct: 89 GMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA 148 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 R RGFGF+TFE E SV++ ++ D+ GK+VE+K+AEP+ Sbjct: 149 EKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPR 191 Score = 68.2 bits (165), Expect = 1e-11 Identities = 36/89 (40%), Positives = 54/89 (60%) Frame = +1 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 M+S + K+FVGGL + T++ LR +FS YG VV+ IM D +T +SRGFGFV F+ Sbjct: 1 MNSAGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60 Query: 364 EDSVERVISEGRMRDLGGKQVEIKKAEPK 450 + V V++ R L G+ ++ K P+ Sbjct: 61 PNCVGTVLA-SRPHTLDGRNIDPKPCTPR 88 Score = 58.9 bits (141), Expect = 7e-09 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 +F K+G +T+ V++ D + PRGFGF+TF D +D+ + H+I G+ VEVKR PR Sbjct: 132 YFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191 Query: 178 EEMSSKDG 201 + + G Sbjct: 192 DSKNQAPG 199
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 127 bits (318), Expect = 2e-29 Identities = 66/153 (43%), Positives = 95/153 (62%), Gaps = 2/153 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 HF K+G I D V+MKD TK RGFGF+T+S +ID H IDGRTVE KR VPR Sbjct: 43 HFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPR 102 Query: 178 EEMSSKD-GPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 +E+ S + G +K+FVGGL E+ LR++F +G +V I+ D TG+ RGF F+ Sbjct: 103 QEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIE 162 Query: 355 FESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 F+ D V+++I + + + K +++KKA K+ Sbjct: 163 FDDYDPVDKIILQ-KTHSIKNKTLDVKKAIAKQ 194 Score = 68.6 bits (166), Expect = 9e-12 Identities = 32/81 (39%), Positives = 49/81 (60%) Frame = +1 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 RK+F+GGL T+D L+ HF +GN+V+ +M D T RSRGFGF+T+ ++ Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNA-Q 82 Query: 391 EGRMRDLGGKQVEIKKAEPKK 453 R + G+ VE K+A P++ Sbjct: 83 NARPHKIDGRTVEPKRAVPRQ 103
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 126 bits (316), Expect = 4e-29 Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 2/163 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 HF ++G +TD V+M+D +TK RGFGFVT++ +D + H +DGR VE KR V R Sbjct: 32 HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR 91 Query: 178 EEMSSKDGPKT-RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 E+ T +KIFVGG+ E LRD+F YG + +IM D +G+ RGF FVT Sbjct: 92 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 151 Query: 355 FESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGR 483 F+ DSV++++ + + + G E++KA K+ SS+ R Sbjct: 152 FDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMASASSSQR 193 Score = 66.6 bits (161), Expect = 3e-11 Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 3/97 (3%) Frame = +1 Query: 187 SSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESE 366 S K+ + RK+F+GGL T++ LR HF +G + + +M D +T RSRGFGFVT+ + Sbjct: 5 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 64 Query: 367 DSVERVISEGRMRDLGGKQVEIKKA---EPKKHGGDH 468 + V+ ++ R + G+ VE K+A E + G H Sbjct: 65 EEVDAAMN-ARPHKVDGRVVEPKRAVSREDSQRPGAH 100
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 126 bits (316), Expect = 4e-29 Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 2/163 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 HF ++G +TD V+M+D +TK RGFGFVT++ +D + H +DGR VE KR V R Sbjct: 32 HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR 91 Query: 178 EEMSSKDGPKT-RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 E+ T +KIFVGG+ E LRD+F YG + +IM D +G+ RGF FVT Sbjct: 92 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 151 Query: 355 FESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGR 483 F+ DSV++++ + + + G E++KA K+ SS+ R Sbjct: 152 FDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMASASSSQR 193 Score = 66.6 bits (161), Expect = 3e-11 Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 3/97 (3%) Frame = +1 Query: 187 SSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESE 366 S K+ + RK+F+GGL T++ LR HF +G + + +M D +T RSRGFGFVT+ + Sbjct: 5 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 64 Query: 367 DSVERVISEGRMRDLGGKQVEIKKA---EPKKHGGDH 468 + V+ ++ R + G+ VE K+A E + G H Sbjct: 65 EEVDAAMN-ARPHKVDGRVVEPKRAVSREDSQRPGAH 100
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 126 bits (316), Expect = 4e-29 Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 2/163 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 HF ++G +TD V+M+D +TK RGFGFVT++ +D + H +DGR VE KR V R Sbjct: 32 HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR 91 Query: 178 EEMSSKDGPKT-RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 E+ T +KIFVGG+ E LRD+F YG + +IM D +G+ RGF FVT Sbjct: 92 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 151 Query: 355 FESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGR 483 F+ DSV++++ + + + G E++KA K+ SS+ R Sbjct: 152 FDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMASASSSQR 193 Score = 66.6 bits (161), Expect = 3e-11 Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 3/97 (3%) Frame = +1 Query: 187 SSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESE 366 S K+ + RK+F+GGL T++ LR HF +G + + +M D +T RSRGFGFVT+ + Sbjct: 5 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 64 Query: 367 DSVERVISEGRMRDLGGKQVEIKKA---EPKKHGGDH 468 + V+ ++ R + G+ VE K+A E + G H Sbjct: 65 EEVDAAMN-ARPHKVDGRVVEPKRAVSREDSQRPGAH 100
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 125 bits (314), Expect = 6e-29 Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 2/163 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 HF ++G +TD V+M+D +TK RGFGFVT++ +D + H +DGR VE KR V R Sbjct: 32 HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR 91 Query: 178 EEMSSKDGPKT-RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 E+ T +KIFVGG+ E LRD+F YG + +IM D +G+ RGF FVT Sbjct: 92 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 151 Query: 355 FESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGR 483 F+ DSV++++ + + + G E++KA K+ SS+ R Sbjct: 152 FDDHDSVDKIVIQ-KYHTVNGHNCEVRKALCKQEMASASSSQR 193 Score = 66.6 bits (161), Expect = 3e-11 Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 3/97 (3%) Frame = +1 Query: 187 SSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESE 366 S K+ + RK+F+GGL T++ LR HF +G + + +M D +T RSRGFGFVT+ + Sbjct: 5 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 64 Query: 367 DSVERVISEGRMRDLGGKQVEIKKA---EPKKHGGDH 468 + V+ ++ R + G+ VE K+A E + G H Sbjct: 65 EEVDAAMN-ARPHKVDGRVVEPKRAVSREDSQRPGAH 100
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 125 bits (314), Expect = 6e-29 Identities = 67/165 (40%), Positives = 98/165 (59%), Gaps = 15/165 (9%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVK----- 162 +F +YG + D VIMKDK T RGFGFV F DP+ + VL H +DGR ++ K Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88 Query: 163 -----RTVPREEMSSKD----GPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVD 315 R+ PRE K+ ++ KIFVGG+P E +L+++F+ +G V E ++ D Sbjct: 89 GMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYD 148 Query: 316 HSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 R RGFGF+TFE E SV++ ++ D+ GK+VE+K+AEP+ Sbjct: 149 AEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPR 192 Score = 70.1 bits (170), Expect = 3e-12 Identities = 36/89 (40%), Positives = 56/89 (62%) Frame = +1 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 M+++ G + K+FVGGL + T++ LR +FS YG VV+ IM D +T +SRGFGFV F+ Sbjct: 1 MNNQGGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60 Query: 364 EDSVERVISEGRMRDLGGKQVEIKKAEPK 450 + V V++ R L G+ ++ K P+ Sbjct: 61 PNCVGTVLA-SRPHTLDGRNIDPKPCTPR 88 Score = 62.4 bits (150), Expect = 6e-10 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 +F ++G +T+ V++ D + PRGFGF+TF D +D+ + H+I G+ VEVKR PR Sbjct: 133 YFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 192 Query: 178 EEMSSKDGP 204 + S GP Sbjct: 193 DSKSQTPGP 201
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 124 bits (311), Expect = 1e-28 Identities = 64/163 (39%), Positives = 96/163 (58%), Gaps = 2/163 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 HF ++G +TD V+M+D +TK RGFGFVT++ +D + H +DGR VE KR V R Sbjct: 32 HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSR 91 Query: 178 EEMSSKDGPKT-RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 E+ T +KIFVGG+ E LRD+F YG + +IM D +G+ RGF FVT Sbjct: 92 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 151 Query: 355 FESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGR 483 F+ +SV++++ + + + G E++KA K+ SS+ R Sbjct: 152 FDDHNSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMASASSSQR 193 Score = 66.6 bits (161), Expect = 3e-11 Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 3/97 (3%) Frame = +1 Query: 187 SSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESE 366 S K+ + RK+F+GGL T++ LR HF +G + + +M D +T RSRGFGFVT+ + Sbjct: 5 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 64 Query: 367 DSVERVISEGRMRDLGGKQVEIKKA---EPKKHGGDH 468 + V+ ++ R + G+ VE K+A E + G H Sbjct: 65 EKVDAAMN-ARPHKVDGRVVEPKRAVSREDSQRPGAH 100
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 124 bits (310), Expect = 2e-28 Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 3/154 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVL-EDEHNIDGRTVEVKRTVPR 177 HF K+G +TD V+M+D TK RGFGFVT+S +D + H +DGR VE KR V R Sbjct: 54 HFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSR 113 Query: 178 EEMSSKDGPK--TRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFV 351 E+ S K G +KIFVGG+ E +LRD+F YG + ++M D +G+ RGF FV Sbjct: 114 ED-SVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFV 172 Query: 352 TFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 TF+ D+V++++ + + + G E+KKA K+ Sbjct: 173 TFDDHDTVDKIVVQ-KYHTINGHNCEVKKALSKQ 205 Score = 66.2 bits (160), Expect = 4e-11 Identities = 35/94 (37%), Positives = 53/94 (56%) Frame = +1 Query: 160 KRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRG 339 +R E K+ + RK+F+GGL T+D LR+HF +G + + +M D T RSRG Sbjct: 18 RRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRG 77 Query: 340 FGFVTFESEDSVERVISEGRMRDLGGKQVEIKKA 441 FGFVT+ + V+ + R + G+ VE K+A Sbjct: 78 FGFVTYSCVEEVDAAMC-ARPHKVDGRVVEPKRA 110 Score = 57.4 bits (137), Expect = 2e-08 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDK-VLEDEHNIDGRTVEVKRTVPR 177 +F KYG I +M+D+ + RGF FVTF D +DK V++ H I+G EVK+ + + Sbjct: 145 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 204 Query: 178 EEMSSKDGPKTR 213 +EM S + R Sbjct: 205 QEMQSAGSQRGR 216
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 124 bits (310), Expect = 2e-28 Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 3/154 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVL-EDEHNIDGRTVEVKRTVPR 177 HF K+G +TD V+M+D TK RGFGFVT+S +D + H +DGR VE KR V R Sbjct: 54 HFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSR 113 Query: 178 EEMSSKDGPK--TRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFV 351 E+ S K G +KIFVGG+ E +LRD+F YG + ++M D +G+ RGF FV Sbjct: 114 ED-SVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFV 172 Query: 352 TFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 TF+ D+V++++ + + + G E+KKA K+ Sbjct: 173 TFDDHDTVDKIVVQ-KYHTINGHNCEVKKALSKQ 205 Score = 66.2 bits (160), Expect = 4e-11 Identities = 35/94 (37%), Positives = 53/94 (56%) Frame = +1 Query: 160 KRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRG 339 +R E K+ + RK+F+GGL T+D LR+HF +G + + +M D T RSRG Sbjct: 18 RRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRG 77 Query: 340 FGFVTFESEDSVERVISEGRMRDLGGKQVEIKKA 441 FGFVT+ + V+ + R + G+ VE K+A Sbjct: 78 FGFVTYSCVEEVDAAMC-ARPHKVDGRVVEPKRA 110 Score = 57.4 bits (137), Expect = 2e-08 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDK-VLEDEHNIDGRTVEVKRTVPR 177 +F KYG I +M+D+ + RGF FVTF D +DK V++ H I+G EVK+ + + Sbjct: 145 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 204 Query: 178 EEMSSKDGPKTR 213 +EM S + R Sbjct: 205 QEMQSAGSQRGR 216
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 124 bits (310), Expect = 2e-28 Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 3/154 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVL-EDEHNIDGRTVEVKRTVPR 177 HF K+G +TD V+M+D TK RGFGFVT+S +D + H +DGR VE KR V R Sbjct: 54 HFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSR 113 Query: 178 EEMSSKDGPK--TRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFV 351 E+ S K G +KIFVGG+ E +LRD+F YG + ++M D +G+ RGF FV Sbjct: 114 ED-SVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFV 172 Query: 352 TFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 TF+ D+V++++ + + + G E+KKA K+ Sbjct: 173 TFDDHDTVDKIVVQ-KYHTINGHNCEVKKALSKQ 205 Score = 66.2 bits (160), Expect = 4e-11 Identities = 35/94 (37%), Positives = 53/94 (56%) Frame = +1 Query: 160 KRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRG 339 +R E K+ + RK+F+GGL T+D LR+HF +G + + +M D T RSRG Sbjct: 18 RRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRG 77 Query: 340 FGFVTFESEDSVERVISEGRMRDLGGKQVEIKKA 441 FGFVT+ + V+ + R + G+ VE K+A Sbjct: 78 FGFVTYSCVEEVDAAMC-ARPHKVDGRVVEPKRA 110 Score = 57.4 bits (137), Expect = 2e-08 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDK-VLEDEHNIDGRTVEVKRTVPR 177 +F KYG I +M+D+ + RGF FVTF D +DK V++ H I+G EVK+ + + Sbjct: 145 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 204 Query: 178 EEMSSKDGPKTR 213 +EM S + R Sbjct: 205 QEMQSAGSQRGR 216
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 122 bits (305), Expect = 7e-28 Identities = 63/163 (38%), Positives = 95/163 (58%), Gaps = 2/163 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 HF ++G +TD V+M+D ++K RGFGFVT+ +D + H +DGR VE KR V R Sbjct: 33 HFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVDGRVVEPKRAVSR 92 Query: 178 EEMSSKDGPKT-RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 E+ S T +KIFVGG+ ED LR++F YG + +IM D +G+ RGF FVT Sbjct: 93 EDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152 Query: 355 FESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGR 483 FE DSV++++ + + + +++KA K+ S + R Sbjct: 153 FEDHDSVDKIVIQ-KYHTVNNHNSQVRKALSKQEMASVSGSQR 194 Score = 65.1 bits (157), Expect = 1e-10 Identities = 32/77 (41%), Positives = 50/77 (64%) Frame = +1 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 RK+F+GGL T++ LR+HF +G + + +M D ++ RSRGFGFVT+ S D V+ ++ Sbjct: 14 RKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMT 73 Query: 391 EGRMRDLGGKQVEIKKA 441 R + G+ VE K+A Sbjct: 74 -ARPHKVDGRVVEPKRA 89
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 122 bits (305), Expect = 7e-28 Identities = 68/170 (40%), Positives = 102/170 (60%), Gaps = 10/170 (5%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE-DEHNIDGRTVEVKRTVPR 177 HF +G +TD V++ + TK R FGFVT+S+ D + H +DG TVE+KR V R Sbjct: 26 HFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSR 85 Query: 178 EEMSSKDGP--KTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFV 351 E+ S++ G K +K+FVGGL + E DL +HFS +G V + +I+ D +G+ RGFGFV Sbjct: 86 ED-SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFV 144 Query: 352 TFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKH-------GGDHSSNG 480 F++ D+ ++ + + + G +VE+KKA PK+ GG SS G Sbjct: 145 YFQNHDAADKA-AVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGGSRSSRG 193 Score = 53.1 bits (126), Expect = 4e-07 Identities = 26/76 (34%), Positives = 45/76 (59%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 K+F+GGL +E LR HF ++G + + ++V+ T RSR FGFVT+ + + + ++ Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA- 66 Query: 394 GRMRDLGGKQVEIKKA 441 + G VE+K+A Sbjct: 67 ASPHAVDGNTVELKRA 82
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 120 bits (301), Expect = 2e-27 Identities = 62/150 (41%), Positives = 93/150 (62%), Gaps = 3/150 (2%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 ++ ++G +TD V+M+D +K RGFGFVTFS + +D + H+IDGR VE KR V R Sbjct: 28 YYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR 87 Query: 178 EEMSSKDGPKT--RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFV 351 EE S K G +K+FVGG+ E LRD+F YG + +I+ D +G+ RGFGFV Sbjct: 88 EE-SGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFV 146 Query: 352 TFESEDSVERVISEGRMRDLGGKQVEIKKA 441 TF+ D V++++ + + + G E++KA Sbjct: 147 TFDDHDPVDKIVLQ-KYHTINGHNAEVRKA 175 Score = 64.3 bits (155), Expect = 2e-10 Identities = 32/84 (38%), Positives = 52/84 (61%) Frame = +1 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 RK+F+GGL TE+ LR+++ +G + + +M D ++ RSRGFGFVTF S V+ ++ Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68 Query: 391 EGRMRDLGGKQVEIKKAEPKKHGG 462 R + G+ VE K+A ++ G Sbjct: 69 -ARPHSIDGRVVEPKRAVAREESG 91 Score = 55.1 bits (131), Expect = 1e-07 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDK-VLEDEHNIDGRTVEVKRTVPR 177 +F +YG I I+ D+ + RGFGFVTF D +DK VL+ H I+G EV++ + R Sbjct: 119 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 178 Query: 178 EEM----SSKDG 201 +EM SS+ G Sbjct: 179 QEMQEVQSSRSG 190
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 120 bits (301), Expect = 2e-27 Identities = 62/150 (41%), Positives = 93/150 (62%), Gaps = 3/150 (2%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 ++ ++G +TD V+M+D +K RGFGFVTFS + +D + H+IDGR VE KR V R Sbjct: 40 YYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR 99 Query: 178 EEMSSKDGPKT--RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFV 351 EE S K G +K+FVGG+ E LRD+F YG + +I+ D +G+ RGFGFV Sbjct: 100 EE-SGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFV 158 Query: 352 TFESEDSVERVISEGRMRDLGGKQVEIKKA 441 TF+ D V++++ + + + G E++KA Sbjct: 159 TFDDHDPVDKIVLQ-KYHTINGHNAEVRKA 187 Score = 67.0 bits (162), Expect = 3e-11 Identities = 36/99 (36%), Positives = 59/99 (59%) Frame = +1 Query: 166 TVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFG 345 TVP E ++ + RK+F+GGL TE+ LR+++ +G + + +M D ++ RSRGFG Sbjct: 7 TVPLER-KKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFG 65 Query: 346 FVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGG 462 FVTF S V+ ++ R + G+ VE K+A ++ G Sbjct: 66 FVTFSSMAEVDAAMA-ARPHSIDGRVVEPKRAVAREESG 103 Score = 55.1 bits (131), Expect = 1e-07 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 5/72 (6%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDK-VLEDEHNIDGRTVEVKRTVPR 177 +F +YG I I+ D+ + RGFGFVTF D +DK VL+ H I+G EV++ + R Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190 Query: 178 EEM----SSKDG 201 +EM SS+ G Sbjct: 191 QEMQEVQSSRSG 202
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 120 bits (300), Expect = 3e-27 Identities = 62/153 (40%), Positives = 92/153 (60%), Gaps = 2/153 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 HF ++G +TD V+M+D TK RGFGFVT+S +D + H +DGR VE KR V R Sbjct: 46 HFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVEPKRAVSR 105 Query: 178 EEMSSKDGPKT-RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 E+ + T +KIFVGG+ E LRD+ SYG + ++M D +G+ RGF FVT Sbjct: 106 EDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVT 165 Query: 355 FESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 F+ D+V++++ + + + G E+KKA K+ Sbjct: 166 FDDHDTVDKIVVQ-KYHTINGHNCEVKKALSKQ 197 Score = 67.0 bits (162), Expect = 3e-11 Identities = 34/83 (40%), Positives = 51/83 (61%) Frame = +1 Query: 193 KDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDS 372 K+ + RK+F+GGL T+D LR+HF +G + + +M D T RSRGFGFVT+ + Sbjct: 21 KEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEE 80 Query: 373 VERVISEGRMRDLGGKQVEIKKA 441 V+ +S R + G+ VE K+A Sbjct: 81 VDASMS-ARPHKVDGRVVEPKRA 102 Score = 52.4 bits (124), Expect = 7e-07 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Frame = +1 Query: 13 YGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDK-VLEDEHNIDGRTVEVKRTVPREEMS 189 YG I +M+D+ + RGF FVTF D +DK V++ H I+G EVK+ + ++EM Sbjct: 141 YGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 200 Query: 190 SKDGPKTR 213 + + R Sbjct: 201 TASAQRGR 208
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 119 bits (297), Expect = 6e-27 Identities = 58/151 (38%), Positives = 99/151 (65%), Gaps = 2/151 (1%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPRE 180 + ++G ITD ++M+D TK RGFGFVTFS + +D ++ H IDG+TV+ KR VPR+ Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRD 102 Query: 181 EMS-SKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 + + S+ T++++V G+ TED L ++F+ YG V + +I++D +T + RGFGFVTF Sbjct: 103 DKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTF 162 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 + DSV++ + + + + G + +++K K Sbjct: 163 DDHDSVDQCVLQ-KSHMVNGHRCDVRKGLSK 192 Score = 70.9 bits (172), Expect = 2e-12 Identities = 38/97 (39%), Positives = 57/97 (58%) Frame = +1 Query: 187 SSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESE 366 +S + RKIFVGGL S T+D +R+ +S +G + + +M D +T RSRGFGFVTF + Sbjct: 15 ASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGK 74 Query: 367 DSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSN 477 V+ + + R + GK V+ K+A P+ SN Sbjct: 75 TEVDAAMKQ-RPHIIDGKTVDPKRAVPRDDKNRSESN 110 Score = 62.8 bits (151), Expect = 5e-10 Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 1/73 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDK-VLEDEHNIDGRTVEVKRTVPR 177 +F KYG +T S I+ DK T+ PRGFGFVTF D +D+ VL+ H ++G +V++ + + Sbjct: 133 YFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSK 192 Query: 178 EEMSSKDGPKTRK 216 +EMS + R+ Sbjct: 193 DEMSKAQMNRDRE 205
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 118 bits (296), Expect = 8e-27 Identities = 63/157 (40%), Positives = 94/157 (59%), Gaps = 3/157 (1%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPRE 180 + ++G +TD V+M+D +K RGFGFVTFS + +D + H IDGR VE KR V RE Sbjct: 29 YEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSARPHTIDGRVVEPKRAVARE 88 Query: 181 EMSSKDGPKT--RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 E S+K G +K+FVGG+ E LR++F YG + +I+ D +G+ RGFGFVT Sbjct: 89 E-SAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVT 147 Query: 355 FESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGD 465 F D V++++ + + + G E++KA K+ D Sbjct: 148 FNDHDPVDKIVLQ-KYHTINGHNAEVRKALSKQEMQD 183 Score = 60.8 bits (146), Expect = 2e-09 Identities = 31/77 (40%), Positives = 48/77 (62%) Frame = +1 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 RK+F+GGL TE+ LR+ + +G + + +M D ++ RSRGFGFVTF + V+ +S Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68 Query: 391 EGRMRDLGGKQVEIKKA 441 R + G+ VE K+A Sbjct: 69 -ARPHTIDGRVVEPKRA 84 Score = 57.0 bits (136), Expect = 3e-08 Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDK-VLEDEHNIDGRTVEVKRTVPR 177 +F +YG I + I+ DK + RGFGFVTF+D +DK VL+ H I+G EV++ + + Sbjct: 119 YFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSK 178 Query: 178 EEMSSKDGPKTRK 216 +EM + + Sbjct: 179 QEMQDVQNTRNNR 191
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 117 bits (294), Expect = 1e-26 Identities = 61/153 (39%), Positives = 91/153 (59%), Gaps = 2/153 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 HF ++G +TD V+M+D TK RGFGFVT+S +D + H +DGR VE KR V R Sbjct: 46 HFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVEPKRAVSR 105 Query: 178 EEMSSKDGPKT-RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 E+ + T +KIFVGG+ E LRD+F YG + ++M D +G+ RGF FVT Sbjct: 106 EDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVT 165 Query: 355 FESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 F+ D+V++++ + + + E+KKA K+ Sbjct: 166 FDDHDTVDKIVVQ-KYHTINLHNCEVKKALSKQ 197 Score = 67.0 bits (162), Expect = 3e-11 Identities = 34/83 (40%), Positives = 51/83 (61%) Frame = +1 Query: 193 KDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDS 372 K+ + RK+F+GGL T+D LR+HF +G + + +M D T RSRGFGFVT+ + Sbjct: 21 KEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEE 80 Query: 373 VERVISEGRMRDLGGKQVEIKKA 441 V+ +S R + G+ VE K+A Sbjct: 81 VDASMS-ARPHKVDGRVVEPKRA 102 Score = 50.1 bits (118), Expect = 3e-06 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDK-VLEDEHNIDGRTVEVKRTVPR 177 +F YG I +M+D+ + RGF FVTF D +DK V++ H I+ EVK+ + + Sbjct: 137 YFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHNCEVKKALSK 196 Query: 178 EEMSSKDGPKTR 213 +EM + + R Sbjct: 197 QEMQTASAQRGR 208
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 117 bits (293), Expect = 2e-26 Identities = 62/158 (39%), Positives = 95/158 (60%), Gaps = 3/158 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 ++ ++G +TD V+M+D +K RGFGFVTFS + +D + H IDGR VE KR V R Sbjct: 28 YYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMATRPHTIDGRVVEPKRAVAR 87 Query: 178 EEMSSKDGPKT--RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFV 351 EE S+K G +K+FVGG+ E LR++F YG + +I+ D +G+ RGF FV Sbjct: 88 EE-SAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFV 146 Query: 352 TFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGD 465 TF+ D V++++ + + + G E++KA K+ D Sbjct: 147 TFDDHDPVDKIVLQ-KYHTINGHNAEVRKALSKQEMQD 183 Score = 60.5 bits (145), Expect = 2e-09 Identities = 30/77 (38%), Positives = 49/77 (63%) Frame = +1 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 RK+F+GGL TE+ LR+++ +G + + +M D ++ RSRGFGFVTF + V+ ++ Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68 Query: 391 EGRMRDLGGKQVEIKKA 441 R + G+ VE K+A Sbjct: 69 T-RPHTIDGRVVEPKRA 84 Score = 53.1 bits (126), Expect = 4e-07 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDK-VLEDEHNIDGRTVEVKRTVPR 177 +F +YG I I+ DK + RGF FVTF D +DK VL+ H I+G EV++ + + Sbjct: 119 YFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSK 178 Query: 178 EEMSSKDGPKTRK 216 +EM + + Sbjct: 179 QEMQDVQNTRNNR 191
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 117 bits (293), Expect = 2e-26 Identities = 58/148 (39%), Positives = 96/148 (64%), Gaps = 2/148 (1%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPRE 180 +G++G + D V+M+D TK RGFGF+T++ ++D+ E+ H IDG+TVE KR +PR Sbjct: 52 YGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHIIDGKTVEAKRALPRP 111 Query: 181 EMSSKD-GPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 E S++ +K+FVGGL E+ LR++F +GNVV +++ D +TG+ RGF FV F Sbjct: 112 ERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEF 171 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKA 441 + D+V++ I + + + V++KK+ Sbjct: 172 DDYDAVDKAILK-KQHAIKYVHVDVKKS 198 Score = 68.2 bits (165), Expect = 1e-11 Identities = 44/125 (35%), Positives = 65/125 (52%) Frame = +1 Query: 103 VIDKVLEDEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSY 282 V D+ L DE + +V REE + RK+F+GGL TE++L+ + + Sbjct: 2 VKDEPLSDE------SADVIVLADREEDDICELEHLRKLFIGGLAPYTTEENLKLFYGQW 55 Query: 283 GNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGG 462 G VV+ +M D +T RSRGFGF+T+ V+R E R + GK VE K+A P+ Sbjct: 56 GKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRA-QENRPHIIDGKTVEAKRALPRPERE 114 Query: 463 DHSSN 477 +N Sbjct: 115 SRETN 119 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDK-VLEDEHNIDGRTVEVKRTVPR 177 +F ++G + ++ DK T RGF FV F D +DK +L+ +H I V+VK+++ Sbjct: 142 YFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYN 201 Query: 178 EEMSSKDGP 204 + K P Sbjct: 202 LDKKEKQQP 210
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 114 bits (286), Expect = 1e-25 Identities = 61/168 (36%), Positives = 99/168 (58%), Gaps = 3/168 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLED-EHNIDGRTVEVKRTVPR 177 +F K+G + D I D +T RGFGF+ F D S ++KVL+ EH +DGR ++ P+ Sbjct: 94 YFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID-----PK 148 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 + M+ K P +KIFVGGL TE+ +R++F +G + ++ +D + RGF F+TF Sbjct: 149 KAMAMKKDP-VKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITF 207 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAEPKK--HGGDHSSNGRSSHS 495 + ED V++V+ E + + G + EIK A+PK+ + S GR + + Sbjct: 208 KEEDPVKKVL-EKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRN 254 Score = 73.6 bits (179), Expect = 3e-13 Identities = 38/89 (42%), Positives = 58/89 (65%) Frame = +1 Query: 187 SSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESE 366 +SK+ K+FVGGL ++ DL+D+F+ +G VV+ I +D +TGRSRGFGF+ F+ Sbjct: 67 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDS 126 Query: 367 DSVERVISEGRMRDLGGKQVEIKKAEPKK 453 SVE+V+ + R L G+ ++ KKA K Sbjct: 127 SSVEKVLDQKEHR-LDGRVIDPKKAMAMK 154
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 110 bits (275), Expect = 2e-24 Identities = 60/169 (35%), Positives = 101/169 (59%), Gaps = 4/169 (2%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLED-EHNIDGRTVEVKRTVPR 177 +F K+G + D I D +T RGFGF+ F D + ++KVL+ EH +DGR ++ P+ Sbjct: 87 YFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PK 141 Query: 178 EEMSSKDGPKTRKIFVGGL-PSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 + M+ K P +KIFVGGL P + TE+ +R++F +G + ++ +D + RGF F+T Sbjct: 142 KAMAMKKDP-VKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFIT 200 Query: 355 FESEDSVERVISEGRMRDLGGKQVEIKKAEPKK--HGGDHSSNGRSSHS 495 F+ E+ V++V+ E + + G + EIK A+PK+ + S GR + + Sbjct: 201 FKEEEPVKKVL-EKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRN 248 Score = 78.2 bits (191), Expect = 1e-14 Identities = 42/98 (42%), Positives = 65/98 (66%), Gaps = 1/98 (1%) Frame = +1 Query: 163 RTVPREEMS-SKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRG 339 RT PR++++ SK+ K+FVGGL ++ DL+D+F+ +G VV+ I +D +TGRSRG Sbjct: 51 RTAPRDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 110 Query: 340 FGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 FGF+ F+ SVE+V+ + R L G+ ++ KKA K Sbjct: 111 FGFILFKDAASVEKVLDQKEHR-LDGRVIDPKKAMAMK 147
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 102 bits (253), Expect = 7e-22 Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKV-LEDEHNIDGRTVEVKRTVPR 177 HFGKYG I + D T RGF F+ F++ IDKV DEH I+ + V+ K+ R Sbjct: 75 HFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKAR 134 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 KIFVGGL + +++++++ +F +GN+VE ++ D + +GF F+TF Sbjct: 135 HG----------KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITF 184 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 +SE V ++ + + + GK+V++K+A PK Sbjct: 185 DSEQVVTDLLKTPKQK-IAGKEVDVKRATPK 214 Score = 68.9 bits (167), Expect = 7e-12 Identities = 35/83 (42%), Positives = 51/83 (61%) Frame = +1 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 RK+FVGGL TE +LRDHF YG + + D TGRSRGF F+ F + +++++V S Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKV-S 114 Query: 391 EGRMRDLGGKQVEIKKAEPKKHG 459 + K+V+ KKA+ +HG Sbjct: 115 AADEHIINSKKVDPKKAK-ARHG 136
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 99.4 bits (246), Expect = 5e-21 Identities = 53/152 (34%), Positives = 91/152 (59%), Gaps = 1/152 (0%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLED-EHNIDGRTVEVKRTVPR 177 +F K+G + D + D T RGFGFV F + +DKV++ EH ++G+ ++ KR Sbjct: 116 YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 172 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 + M +K+ K KIFVGGL E+ +R++F +G V ++ +D+ T + RGF F+TF Sbjct: 173 KAMKTKEPVK--KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 + E+ V++++ E + ++G + EIK A K+ Sbjct: 231 KEEEPVKKIM-EKKYHNVGLSKCEIKVAMSKE 261 Score = 72.8 bits (177), Expect = 5e-13 Identities = 37/94 (39%), Positives = 60/94 (63%) Frame = +1 Query: 172 PREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFV 351 PR ++ + K+F+GGL T+ DL+D+FS +G VV+ + +D TGRSRGFGFV Sbjct: 84 PRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 143 Query: 352 TFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 F+ +SV++V+ + + L GK ++ K+A+ K Sbjct: 144 LFKESESVDKVMDQ-KEHKLNGKVIDPKRAKAMK 176
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 99.4 bits (246), Expect = 5e-21 Identities = 53/152 (34%), Positives = 91/152 (59%), Gaps = 1/152 (0%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLED-EHNIDGRTVEVKRTVPR 177 +F K+G + D + D T RGFGFV F + +DKV++ EH ++G+ ++ KR Sbjct: 116 YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 172 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 + M +K+ K KIFVGGL E+ +R++F +G V ++ +D+ T + RGF F+TF Sbjct: 173 KAMKTKEPVK--KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 + E+ V++++ E + ++G + EIK A K+ Sbjct: 231 KEEEPVKKIM-EKKYHNVGLSKCEIKVAMSKE 261 Score = 73.2 bits (178), Expect = 4e-13 Identities = 37/94 (39%), Positives = 60/94 (63%) Frame = +1 Query: 172 PREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFV 351 PR ++ + K+F+GGL T+ DL+D+FS +G VV+ + +D TGRSRGFGFV Sbjct: 84 PRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 143 Query: 352 TFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 F+ +SV++V+ + + L GK ++ K+A+ K Sbjct: 144 LFKESESVDKVMDQ-KEHKLNGKVIDPKRAKAMK 176
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 99.0 bits (245), Expect = 6e-21 Identities = 53/152 (34%), Positives = 91/152 (59%), Gaps = 1/152 (0%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLED-EHNIDGRTVEVKRTVPR 177 +F K+G + D + D T RGFGFV F + +DKV++ EH ++G+ ++ KR Sbjct: 114 YFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 170 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 + M +K+ K KIFVGGL E+ +R++F +G V ++ +D+ T + RGF F+TF Sbjct: 171 KAMKTKEPVK--KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 228 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 + E+ V++++ E + ++G + EIK A K+ Sbjct: 229 KEEEPVKKIM-EKKYHNVGLSKCEIKVAMSKE 259 Score = 73.2 bits (178), Expect = 4e-13 Identities = 37/94 (39%), Positives = 61/94 (64%) Frame = +1 Query: 172 PREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFV 351 PR ++ + K+F+GGL T+ DL+D+FS +G+VV+ + +D TGRSRGFGFV Sbjct: 82 PRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFV 141 Query: 352 TFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 F+ +SV++V+ + + L GK ++ K+A+ K Sbjct: 142 LFKESESVDKVMDQ-KEHKLNGKVIDPKRAKAMK 174
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 89.0 bits (219), Expect = 6e-18 Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 5/154 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPR 177 F + G + + ++ ++ T RGFGFVT S DK +E +++++GR + V + PR Sbjct: 117 FQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPR 176 Query: 178 ---EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 E + + T +I+VG +P + + L FS +G VV +++ D +GRSRGFGF Sbjct: 177 GSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGF 236 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 VT SE + I+ + L G+ + + AE + Sbjct: 237 VTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270 Score = 54.3 bits (129), Expect = 2e-07 Identities = 26/79 (32%), Positives = 42/79 (53%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 K+FVG LP + + L F G V +++ + T RSRGFGFVT + + ++ + Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157 Query: 394 GRMRDLGGKQVEIKKAEPK 450 DL G+ + + KA P+ Sbjct: 158 YSQYDLNGRLLTVNKAAPR 176
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 87.8 bits (216), Expect = 1e-17 Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 5/154 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPR 177 F G + + ++ ++ T RGFGFVT S +K +E + +++DGR + V + PR Sbjct: 75 FDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPR 134 Query: 178 ---EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 E D + +++VG LP + L FS +G VV +++ D TGRSRGFGF Sbjct: 135 GSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGF 194 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 VT SE V I+ + L G+ V + AE + Sbjct: 195 VTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228 Score = 59.3 bits (142), Expect = 5e-09 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Frame = +1 Query: 115 VLEDEHNIDGRTVEVKRTVPREEMSSKDG------PKTRKIFVGGLPSTLTEDDLRDHFS 276 VLE E + +G T +E + G P+ K+FVG LP + + L F Sbjct: 17 VLEGESDPEGAVSWGSETQVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFD 76 Query: 277 SYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 + G V +++ + T RSRGFGFVT + + E+ + D+ G+Q+ + KA P+ Sbjct: 77 AAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPR 134
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 85.1 bits (209), Expect = 9e-17 Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 5/154 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPR 177 F + G + + ++ ++ T RGFGFVT S + +E + ++++GR + V + PR Sbjct: 170 FEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPR 229 Query: 178 ---EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 E + + +++VG LP + L FS +G VVE +++ D TGRSRGFGF Sbjct: 230 GSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGF 289 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 VT D + IS ++L G+ + + AE + Sbjct: 290 VTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323 Score = 53.1 bits (126), Expect = 4e-07 Identities = 35/123 (28%), Positives = 52/123 (42%) Frame = +1 Query: 82 VTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDL 261 V+ D S D D D +V E + + K+FVG L + L Sbjct: 107 VSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQAL 166 Query: 262 RDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKA 441 F G V +++ + T +SRGFGFVT S D E + + DL G+ + + KA Sbjct: 167 AMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKA 226 Query: 442 EPK 450 P+ Sbjct: 227 APR 229
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 84.7 bits (208), Expect = 1e-16 Identities = 55/165 (33%), Positives = 83/165 (50%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPRE 180 +F +G + + KD T +GFGFV F++ KV+ H IDGR + K +P Sbjct: 123 YFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCK--LPNS 180 Query: 181 EMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFE 360 + S + ++RK+FVG +TED+LR+ FS YG+V++ I R F FVTF Sbjct: 181 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFA 235 Query: 361 SEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGRSSHS 495 + + + E + + G V I AEPK H+SN + S Sbjct: 236 DDQIAQSLCGEDLI--IKGISVHISNAEPK-----HNSNRQLERS 273 Score = 59.3 bits (142), Expect = 5e-09 Identities = 34/86 (39%), Positives = 49/86 (56%) Frame = +1 Query: 151 VEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGR 330 V+VKR V KT + V GLP TE DL+++FS++G V+ Q+ D TG Sbjct: 94 VKVKRAVQ----------KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGH 143 Query: 331 SRGFGFVTFESEDSVERVISEGRMRD 408 S+GFGFV F ++ +V+S+ M D Sbjct: 144 SKGFGFVRFTEYETQVKVMSQRHMID 169
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 84.3 bits (207), Expect = 2e-16 Identities = 47/148 (31%), Positives = 82/148 (55%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 FG G I +++DK T G+GFV +SDP+ DK + + + +T +K + R Sbjct: 59 FGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS 118 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 +S + ++V GLP T+++ ++ FS YG ++ +I++D +TG SRG GF+ F+ Sbjct: 119 SASI---RDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFD- 174 Query: 364 EDSVERVISEGRMRDLGGKQVEIKKAEP 447 +R+ +E ++ L G Q + AEP Sbjct: 175 ----KRIEAEEAIKGLNG-QKPLGAAEP 197 Score = 47.0 bits (110), Expect = 3e-05 Identities = 25/84 (29%), Positives = 44/84 (52%) Frame = +1 Query: 196 DGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSV 375 D KT I V LP +T+D+ + F S G++ +++ D TG+S G+GFV + + Sbjct: 35 DDSKTNLI-VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93 Query: 376 ERVISEGRMRDLGGKQVEIKKAEP 447 ++ I+ L K +++ A P Sbjct: 94 DKAINTLNGLKLQTKTIKVSYARP 117 Score = 39.3 bits (90), Expect = 0.006 Identities = 23/80 (28%), Positives = 37/80 (46%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 IFV L E L F +G V +++ D +T + +GFGFVT + D I+ Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 397 RMRDLGGKQVEIKKAEPKKH 456 LG + +++ K+H Sbjct: 346 NGYRLGERVLQVSFKTSKQH 365 Score = 33.1 bits (74), Expect = 0.41 Identities = 13/31 (41%), Positives = 22/31 (70%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSD 96 FG +GA+T+ +++D T +GFGFVT ++ Sbjct: 304 FGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 334
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 84.3 bits (207), Expect = 2e-16 Identities = 48/148 (32%), Positives = 81/148 (54%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 FG G I +++DK T G+GFV +SDP+ DK + + + +T +K + R Sbjct: 59 FGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS 118 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 +S + ++V GLP T+++ ++ FS YG ++ +I+VD TG SRG GF+ F+ Sbjct: 119 SASI---RDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD- 174 Query: 364 EDSVERVISEGRMRDLGGKQVEIKKAEP 447 +R+ +E ++ L G Q + AEP Sbjct: 175 ----KRIEAEEAIKGLNG-QKPLGAAEP 197 Score = 47.0 bits (110), Expect = 3e-05 Identities = 25/84 (29%), Positives = 44/84 (52%) Frame = +1 Query: 196 DGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSV 375 D KT I V LP +T+D+ + F S G++ +++ D TG+S G+GFV + + Sbjct: 35 DDSKTNLI-VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93 Query: 376 ERVISEGRMRDLGGKQVEIKKAEP 447 ++ I+ L K +++ A P Sbjct: 94 DKAINTLNGLKLQTKTIKVSYARP 117 Score = 39.3 bits (90), Expect = 0.006 Identities = 23/80 (28%), Positives = 37/80 (46%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 IFV L E L F +G V +++ D +T + +GFGFVT + D I+ Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 397 RMRDLGGKQVEIKKAEPKKH 456 LG + +++ K+H Sbjct: 346 NGYRLGERVLQVSFKTSKQH 365 Score = 33.1 bits (74), Expect = 0.41 Identities = 13/31 (41%), Positives = 22/31 (70%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSD 96 FG +GA+T+ +++D T +GFGFVT ++ Sbjct: 304 FGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 334
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 83.6 bits (205), Expect = 3e-16 Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 6/155 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPR 177 F + G + + ++ ++ T RGFGFVT S +K +E + ++++GR + V + R Sbjct: 156 FEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARR 215 Query: 178 EEMSSKDGPKT----RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFG 345 E + P+T +I+VG +P + + L FS +G VV +++ D TGRSRGFG Sbjct: 216 GERPERP-PRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFG 274 Query: 346 FVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 FVT SE + I+ + L G+ + + AE + Sbjct: 275 FVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDR 309 Score = 53.9 bits (128), Expect = 2e-07 Identities = 27/88 (30%), Positives = 46/88 (52%) Frame = +1 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 EE ++ P+ K+FVG LP + + L F G V +++ + T +SRGFGFVT Sbjct: 125 EEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTM 184 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKA 441 + + E+ + D+ G+ + + KA Sbjct: 185 STVEEAEKAVEMYNRYDVNGRLLTVNKA 212
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 83.6 bits (205), Expect = 3e-16 Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 12/161 (7%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVP- 174 F + G + ++ DK T RGFGFVT S ++ + + + +DGR + V P Sbjct: 107 FERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPP 166 Query: 175 --REEMSSKDGPK-------TRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTG 327 RE S + G + + +++VG L + +D L FS G VV+ +++ D +G Sbjct: 167 EKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSG 226 Query: 328 RSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 RSRGFGFVT+ S + V I DL G+ + + AE + Sbjct: 227 RSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 267 Score = 60.5 bits (145), Expect = 2e-09 Identities = 45/135 (33%), Positives = 62/135 (45%) Frame = +1 Query: 82 VTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDL 261 VT SD D++ + E DG V E S D KIFVG LP + L Sbjct: 59 VTLSD---FDQIEDVEDGDDG--------VEEERNFSPD----LKIFVGNLPFSADSAAL 103 Query: 262 RDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKA 441 + F GNV +++ D TGRSRGFGFVT S++ VE + +L G+ + + Sbjct: 104 AELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSG 163 Query: 442 EPKKHGGDHSSNGRS 486 P + + S G S Sbjct: 164 PPPEKRENSSFRGGS 178
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 81.3 bits (199), Expect = 1e-15 Identities = 44/140 (31%), Positives = 76/140 (54%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 FG G I +++DK T G+GFV + DP +K + + + +T +K + R Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 118 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 +S + ++V GLP T+T+ +L FS YG ++ +I+VD TG SRG GF+ F+ Sbjct: 119 SASI---RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD- 174 Query: 364 EDSVERVISEGRMRDLGGKQ 423 +R+ +E ++ L G++ Sbjct: 175 ----KRIEAEEAIKGLNGQK 190 Score = 43.5 bits (101), Expect = 3e-04 Identities = 21/72 (29%), Positives = 38/72 (52%) Frame = +1 Query: 232 LPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDL 411 LP +T+++L+ F S G + +++ D TG+S G+GFV + E+ I+ L Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 412 GGKQVEIKKAEP 447 K +++ A P Sbjct: 106 QTKTIKVSYARP 117 Score = 38.9 bits (89), Expect = 0.008 Identities = 23/80 (28%), Positives = 36/80 (45%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 IFV L E L F +G V +++ D +T + +GFGFVT + D I+ Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 397 RMRDLGGKQVEIKKAEPKKH 456 LG + +++ K H Sbjct: 338 NGYRLGDRVLQVSFKTNKTH 357 Score = 34.3 bits (77), Expect = 0.19 Identities = 13/31 (41%), Positives = 23/31 (74%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSD 96 FG +GA+T+ +++D +T +GFGFVT ++ Sbjct: 296 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 326
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 81.3 bits (199), Expect = 1e-15 Identities = 44/140 (31%), Positives = 76/140 (54%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 FG G I +++DK T G+GFV + DP +K + + + +T +K + R Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 118 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 +S + ++V GLP T+T+ +L FS YG ++ +I+VD TG SRG GF+ F+ Sbjct: 119 SASI---RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD- 174 Query: 364 EDSVERVISEGRMRDLGGKQ 423 +R+ +E ++ L G++ Sbjct: 175 ----KRIEAEEAIKGLNGQK 190 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/77 (28%), Positives = 40/77 (51%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 + V LP +T+++L+ F S G + +++ D TG+S G+GFV + E+ I+ Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 397 RMRDLGGKQVEIKKAEP 447 L K +++ A P Sbjct: 101 NGLRLQTKTIKVSYARP 117 Score = 38.9 bits (89), Expect = 0.008 Identities = 23/80 (28%), Positives = 36/80 (45%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 IFV L E L F +G V +++ D +T + +GFGFVT + D I+ Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 397 RMRDLGGKQVEIKKAEPKKH 456 LG + +++ K H Sbjct: 338 NGYRLGDRVLQVSFKTNKTH 357 Score = 34.3 bits (77), Expect = 0.19 Identities = 13/31 (41%), Positives = 23/31 (74%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSD 96 FG +GA+T+ +++D +T +GFGFVT ++ Sbjct: 296 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 326
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 81.3 bits (199), Expect = 1e-15 Identities = 44/140 (31%), Positives = 76/140 (54%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 FG G I +++DK T G+GFV + DP +K + + + +T +K + R Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 118 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 +S + ++V GLP T+T+ +L FS YG ++ +I+VD TG SRG GF+ F+ Sbjct: 119 SASI---RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD- 174 Query: 364 EDSVERVISEGRMRDLGGKQ 423 +R+ +E ++ L G++ Sbjct: 175 ----KRIEAEEAIKGLNGQK 190 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/77 (28%), Positives = 40/77 (51%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 + V LP +T+++L+ F S G + +++ D TG+S G+GFV + E+ I+ Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 397 RMRDLGGKQVEIKKAEP 447 L K +++ A P Sbjct: 101 NGLRLQTKTIKVSYARP 117 Score = 38.9 bits (89), Expect = 0.008 Identities = 23/80 (28%), Positives = 36/80 (45%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 IFV L E L F +G V +++ D +T + +GFGFVT + D I+ Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 397 RMRDLGGKQVEIKKAEPKKH 456 LG + +++ K H Sbjct: 338 NGYRLGDRVLQVSFKTNKTH 357 Score = 34.3 bits (77), Expect = 0.19 Identities = 13/31 (41%), Positives = 23/31 (74%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSD 96 FG +GA+T+ +++D +T +GFGFVT ++ Sbjct: 296 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 326
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 81.3 bits (199), Expect = 1e-15 Identities = 44/140 (31%), Positives = 76/140 (54%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 FG G I +++DK T G+GFV + DP +K + + + +T +K + R Sbjct: 71 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 130 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 +S + ++V GLP T+T+ +L FS YG ++ +I+VD TG SRG GF+ F+ Sbjct: 131 SASI---RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD- 186 Query: 364 EDSVERVISEGRMRDLGGKQ 423 +R+ +E ++ L G++ Sbjct: 187 ----KRIEAEEAIKGLNGQK 202 Score = 47.0 bits (110), Expect = 3e-05 Identities = 27/92 (29%), Positives = 46/92 (50%) Frame = +1 Query: 172 PREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFV 351 P + ++ D KT I V LP +T+++ R F S G + +++ D TG+S G+GFV Sbjct: 39 PMQTGAATDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV 97 Query: 352 TFESEDSVERVISEGRMRDLGGKQVEIKKAEP 447 + E+ I+ L K +++ A P Sbjct: 98 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 129 Score = 37.0 bits (84), Expect = 0.029 Identities = 23/80 (28%), Positives = 36/80 (45%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 IFV L E L F +G V +++ D +T + +GFGFVT + D I+ Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363 Query: 397 RMRDLGGKQVEIKKAEPKKH 456 LG + +++ K H Sbjct: 364 NGYRLGDRVLQVSFKTNKAH 383 Score = 32.3 bits (72), Expect = 0.71 Identities = 12/31 (38%), Positives = 22/31 (70%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSD 96 FG +GA+ + +++D +T +GFGFVT ++ Sbjct: 322 FGPFGAVNNVKVIRDFNTNKCKGFGFVTMTN 352
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 81.3 bits (199), Expect = 1e-15 Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 18/167 (10%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVP- 174 F + G + ++ DK T RGFGFVT S ++ + + + +DGR + V P Sbjct: 107 FERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPP 166 Query: 175 --------REEMSSKDGPK-------TRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIM 309 RE S + G + + +++VG L + +D L FS G VV+ +++ Sbjct: 167 EKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVV 226 Query: 310 VDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 D +GRSRGFGFVT+ S + V I DL G+ + + AE + Sbjct: 227 YDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 273 Score = 55.5 bits (132), Expect = 8e-08 Identities = 32/92 (34%), Positives = 46/92 (50%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 KIFVG L + L + F GNV +++ D TGRSRGFGFVT S++ VE + Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 394 GRMRDLGGKQVEIKKAEPKKHGGDHSSNGRSS 489 +L G+ + + P + + S SS Sbjct: 148 FNGYELDGRALRVNSGPPPEKRENSSFRENSS 179
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 81.3 bits (199), Expect = 1e-15 Identities = 44/140 (31%), Positives = 76/140 (54%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 FG G I +++DK T G+GFV + DP +K + + + +T +K + R Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 118 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 +S + ++V GLP T+T+ +L FS YG ++ +I+VD TG SRG GF+ F+ Sbjct: 119 SASI---RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD- 174 Query: 364 EDSVERVISEGRMRDLGGKQ 423 +R+ +E ++ L G++ Sbjct: 175 ----KRIEAEEAIKGLNGQK 190 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/77 (28%), Positives = 40/77 (51%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 + V LP +T+++L+ F S G + +++ D TG+S G+GFV + E+ I+ Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 397 RMRDLGGKQVEIKKAEP 447 L K +++ A P Sbjct: 101 NGLRLQTKTIKVSYARP 117 Score = 38.9 bits (89), Expect = 0.008 Identities = 23/80 (28%), Positives = 36/80 (45%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 IFV L E L F +G V +++ D +T + +GFGFVT + D I+ Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338 Query: 397 RMRDLGGKQVEIKKAEPKKH 456 LG + +++ K H Sbjct: 339 NGYRLGDRVLQVSFKTNKTH 358 Score = 34.3 bits (77), Expect = 0.19 Identities = 13/31 (41%), Positives = 23/31 (74%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSD 96 FG +GA+T+ +++D +T +GFGFVT ++ Sbjct: 297 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 327
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 81.3 bits (199), Expect = 1e-15 Identities = 44/140 (31%), Positives = 76/140 (54%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 FG G I +++DK T G+GFV + DP +K + + + +T +K + R Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 118 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 +S + ++V GLP T+T+ +L FS YG ++ +I+VD TG SRG GF+ F+ Sbjct: 119 SASI---RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD- 174 Query: 364 EDSVERVISEGRMRDLGGKQ 423 +R+ +E ++ L G++ Sbjct: 175 ----KRIEAEEAIKGLNGQK 190 Score = 47.0 bits (110), Expect = 3e-05 Identities = 27/92 (29%), Positives = 46/92 (50%) Frame = +1 Query: 172 PREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFV 351 P + ++ D KT I V LP +T+++ R F S G + +++ D TG+S G+GFV Sbjct: 27 PMQTGAATDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV 85 Query: 352 TFESEDSVERVISEGRMRDLGGKQVEIKKAEP 447 + E+ I+ L K +++ A P Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 117 Score = 37.0 bits (84), Expect = 0.029 Identities = 23/80 (28%), Positives = 36/80 (45%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 IFV L E L F +G V +++ D +T + +GFGFVT + D I+ Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351 Query: 397 RMRDLGGKQVEIKKAEPKKH 456 LG + +++ K H Sbjct: 352 NGYRLGDRVLQVSFKTNKAH 371 Score = 32.3 bits (72), Expect = 0.71 Identities = 12/31 (38%), Positives = 22/31 (70%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSD 96 FG +GA+ + +++D +T +GFGFVT ++ Sbjct: 310 FGPFGAVNNVKVIRDFNTNKCKGFGFVTMTN 340
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 81.3 bits (199), Expect = 1e-15 Identities = 44/140 (31%), Positives = 76/140 (54%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 FG G I +++DK T G+GFV + DP +K + + + +T +K + R Sbjct: 66 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 125 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 +S + ++V GLP T+T+ +L FS YG ++ +I+VD TG SRG GF+ F+ Sbjct: 126 SASI---RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD- 181 Query: 364 EDSVERVISEGRMRDLGGKQ 423 +R+ +E ++ L G++ Sbjct: 182 ----KRIEAEEAIKGLNGQK 197 Score = 47.0 bits (110), Expect = 3e-05 Identities = 27/92 (29%), Positives = 46/92 (50%) Frame = +1 Query: 172 PREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFV 351 P + ++ D KT I V LP +T+++ R F S G + +++ D TG+S G+GFV Sbjct: 34 PMQTGATTDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV 92 Query: 352 TFESEDSVERVISEGRMRDLGGKQVEIKKAEP 447 + E+ I+ L K +++ A P Sbjct: 93 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 124 Score = 37.0 bits (84), Expect = 0.029 Identities = 23/80 (28%), Positives = 36/80 (45%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 IFV L E L F +G V +++ D +T + +GFGFVT + D I+ Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358 Query: 397 RMRDLGGKQVEIKKAEPKKH 456 LG + +++ K H Sbjct: 359 NGYRLGDRVLQVSFKTNKAH 378 Score = 32.3 bits (72), Expect = 0.71 Identities = 12/31 (38%), Positives = 22/31 (70%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSD 96 FG +GA+ + +++D +T +GFGFVT ++ Sbjct: 317 FGPFGAVNNVKVIRDFNTNKCKGFGFVTMTN 347
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 79.3 bits (194), Expect = 5e-15 Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 24/173 (13%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKR--TV 171 F G + ++ DK T RGFGFVT S S ++ + + + +DGR + V Sbjct: 111 FESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPP 170 Query: 172 PREEMSSKDGPKT--------------------RKIFVGGLPSTLTEDDLRDHFSSYGNV 291 P+ E GP++ +++VG L + + L FS G V Sbjct: 171 PKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKV 230 Query: 292 VEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 VE +++ D +GRS+GFGFVT++S V+ I DL G+Q+ + +AE + Sbjct: 231 VEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283 Score = 61.6 bits (148), Expect = 1e-09 Identities = 38/106 (35%), Positives = 50/106 (47%) Frame = +1 Query: 172 PREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFV 351 P+E+ S D K+FVG LP + L F S GNV +++ D TGRSRGFGFV Sbjct: 82 PKEQSFSAD----LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFV 137 Query: 352 TFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGRSS 489 T S VE + +L G+ + + P D S G S Sbjct: 138 TMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRS 183
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 76.6 bits (187), Expect = 3e-14 Identities = 52/165 (31%), Positives = 79/165 (47%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPRE 180 +F +G + + KD T +GFGFV F++ KV+ H IDGR + K +P Sbjct: 123 YFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCK--LPNS 180 Query: 181 EMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFE 360 + S + ++RK+FVG +T ++L+ F YG VV+ I R F FVTF Sbjct: 181 KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF-----RAFAFVTFA 235 Query: 361 SEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGRSSHS 495 + + + E + + G V I AEPK H+SN + S Sbjct: 236 DDKVAQSLCGEDLI--IKGISVHISNAEPK-----HNSNRQLERS 273 Score = 60.8 bits (146), Expect = 2e-09 Identities = 35/86 (40%), Positives = 49/86 (56%) Frame = +1 Query: 151 VEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGR 330 V+VKR V KT + V GLP TE DL+D+FS++G V+ Q+ D TG Sbjct: 94 VKVKRAVQ----------KTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGH 143 Query: 331 SRGFGFVTFESEDSVERVISEGRMRD 408 S+GFGFV F ++ +V+S+ M D Sbjct: 144 SKGFGFVRFTEYETQVKVMSQRHMID 169
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 76.6 bits (187), Expect = 3e-14 Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 11/155 (7%) Frame = +1 Query: 10 KYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTV-PRE 180 ++GAI + +M DK++ R FGFVT + V+E ++ I GR ++V T P E Sbjct: 106 EHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLE 165 Query: 181 EMS--------SKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSR 336 M S+ K+++G L T+T + L+D FS G V+ ++ T +S Sbjct: 166 GMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSN 225 Query: 337 GFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKA 441 GFGFV+F SE+ VE I L G+++ + KA Sbjct: 226 GFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260 Score = 65.5 bits (158), Expect = 8e-11 Identities = 31/93 (33%), Positives = 52/93 (55%) Frame = +1 Query: 187 SSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESE 366 SS DG R+++VG +P L D+LR +G + ++M D +GRSR FGFVT ++ Sbjct: 76 SSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTV 135 Query: 367 DSVERVISEGRMRDLGGKQVEIKKAEPKKHGGD 465 + VI + ++GG+++++ E G D Sbjct: 136 EDANAVIEKLNDTEIGGRKIKVNITEKPLEGMD 168 Score = 30.0 bits (66), Expect = 3.5 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKR 165 F + G + + + + T GFGFV+FS ++ ++ +N ++G+ + V + Sbjct: 204 FSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNK 259
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 75.1 bits (183), Expect = 1e-13 Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 16/165 (9%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTV-----EVK 162 F + G + + I+ D+ T RGF FVT + + D + GRTV EV Sbjct: 134 FAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVP 193 Query: 163 RTVPREEMSSK---------DGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVD 315 R RE MS+K D P K++V L LT LRD F+ + +++ D Sbjct: 194 RGGEREVMSAKIRSTYQGFVDSP--HKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYD 251 Query: 316 HSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 S+GRSRGFGF+TF S +++ + +L G+ + + A K Sbjct: 252 RSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296 Score = 57.0 bits (136), Expect = 3e-08 Identities = 32/113 (28%), Positives = 54/113 (47%) Frame = +1 Query: 121 EDEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEH 300 +DE + E + +EE + + +++VG LP ++T L + F+ G V Sbjct: 84 DDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANV 143 Query: 301 QIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHG 459 +I+ D T RSRGF FVT S + + I +GG+ V++ E + G Sbjct: 144 EIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGG 196
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 74.3 bits (181), Expect = 2e-13 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 15/170 (8%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNID-------------- 141 FGKYG I+ +V+MKD+ R FGFV F P +E + I Sbjct: 245 FGKYGDISSAVVMKDQSGNS-RSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKK 303 Query: 142 -GRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 R E++R +E +S + + +++ L ++ ++ L++ FS YGNV ++M++ Sbjct: 304 SDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN- 362 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDH 468 S G SRGFGFV + + + + E + +G K + + A+ K+ H Sbjct: 363 SQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAH 412 Score = 58.5 bits (140), Expect = 9e-09 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 5/154 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F +G I + D + +G+GFV F ++ + ++ + V V V R Sbjct: 152 FSSFGTILSCKVAMDVVGRS-KGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRR 210 Query: 178 EEMSSKDG---PKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 ++ + + P ++V LP +T+D+L+ F YG++ +M D S G SR FGF Sbjct: 211 QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQS-GNSRSFGF 269 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 V F S ++ + + LG + + +A+ K Sbjct: 270 VNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKK 303 Score = 52.8 bits (125), Expect = 5e-07 Identities = 31/119 (26%), Positives = 62/119 (52%) Frame = +1 Query: 70 GFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLT 249 G+ +V F++P + +E + R ++ + + S++ K +F+ L +++ Sbjct: 86 GYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGN-VFIKNLDASID 144 Query: 250 EDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQV 426 L + FSS+G ++ ++ +D GRS+G+GFV FE E++ + I + L KQV Sbjct: 145 NKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQV 202
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 73.9 bits (180), Expect = 2e-13 Identities = 45/165 (27%), Positives = 85/165 (51%), Gaps = 15/165 (9%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLED--EHNIDGRTVEVKRTVPR 177 FG++G IT ++KD++ K PRGFGFV +++ K +++ + G+ + V R + Sbjct: 281 FGQFGEITSLSLVKDQNDK-PRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKK 339 Query: 178 EEMSSK-----DGPKTRK--------IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 E + + K K +F+ L + ++ L+ FS++G + +IM D Sbjct: 340 HEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDE 399 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 G+S+GFGFV + + + + ++E R L GK + + A+ K+ Sbjct: 400 Q-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKE 443 Score = 51.6 bits (122), Expect = 1e-06 Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 8/151 (5%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN---IDGRTVEVKRTVP 174 F G + + +D T+ G+ +V F + +K L DE N I GR + Sbjct: 100 FNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL-DELNYTLIKGRPCRI----- 153 Query: 175 REEMSSKDGPKTRK-----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRG 339 M S+ P RK +F+ L + L D FS++G ++ ++ VD G ++G Sbjct: 154 ---MWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKG 209 Query: 340 FGFVTFESEDSVERVISEGRMRDLGGKQVEI 432 +GFV F+S +S I L K+V + Sbjct: 210 YGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP| core protein C) (Fragment) Length = 158 Score = 73.2 bits (178), Expect = 4e-13 Identities = 40/117 (34%), Positives = 73/117 (62%), Gaps = 1/117 (0%) Frame = +1 Query: 106 IDKVLED-EHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSY 282 +DKV++ EH ++G+ ++ KR + M +K+ K KIFVGGL E+ +R++F + Sbjct: 3 VDKVMDQKEHKLNGKVIDPKRA---KAMKTKEPVK--KIFVGGLSPDTPEEKIREYFGGF 57 Query: 283 GNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 G V ++ +D+ T + RGF F+TF+ E+ V++++ E + ++G + EIK A K+ Sbjct: 58 GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM-EKKYHNVGLSKCEIKVAMSKE 113 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDE-HNIDGRTVEVKRTVPR 177 +FG +G + + D T RGF F+TF + + K++E + HN+ E+K + + Sbjct: 53 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 112 Query: 178 EEMSSKDGPKTRKIFVG 228 E+ + +R F G Sbjct: 113 EQYQQQQQWGSRGGFAG 129
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 73.2 bits (178), Expect = 4e-13 Identities = 34/91 (37%), Positives = 56/91 (61%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 + FVGGL ++DL+ FS +G+V++ +I+ D +GRSRGFGFVTF+ E ++ I E Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66 Query: 394 GRMRDLGGKQVEIKKAEPKKHGGDHSSNGRS 486 ++L G+ + + +A+ + GG G S Sbjct: 67 MNGKELDGRVITVNEAQSRGSGGGGGGRGGS 97 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEH--NIDGRTVEVKRTVPR 177 F ++G + DS I+ D+ + RGFGFVTF D + +E+ + +DGR + V R Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 72.8 bits (177), Expect = 5e-13 Identities = 33/89 (37%), Positives = 54/89 (60%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 + FVGGL + + L + F+SYG +++ +++ D TGRSRGFGFVTF SE+S+ I Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68 Query: 394 GRMRDLGGKQVEIKKAEPKKHGGDHSSNG 480 ++L G+ + + +A+ + GG G Sbjct: 69 MNGKELDGRNITVNQAQSRGGGGGGGGYG 97 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEH--NIDGRTVEVKRTVPR 177 F YG I DS ++ D+ T RGFGFVTFS + + +E+ + +DGR + V + R Sbjct: 28 FASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 72.8 bits (177), Expect = 5e-13 Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 31/180 (17%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKR---T 168 F + G + ++ DK T RGFGFVT S ++ + + + IDGR + V Sbjct: 107 FERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAP 166 Query: 169 VPREEMS-------------SKDG-------------PKTRKIFVGGLPSTLTEDDLRDH 270 RE S +DG + +++VG L + + L++ Sbjct: 167 AKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKEL 226 Query: 271 FSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 FS GNVV+ +++ D +GRSRGFGFVT+ S V I DL G+ + + AE + Sbjct: 227 FSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286 Score = 55.8 bits (133), Expect = 6e-08 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 K+FVG LP ++ L F GNV +++ D TGRSRGFGFVT +++ VE + Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147 Query: 394 GRMRDLGGKQVEIKKA-EPKKHGGDHSSNGRSSHS 495 ++ G+ + + P K GR +S Sbjct: 148 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNS 182
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 72.4 bits (176), Expect = 6e-13 Identities = 40/154 (25%), Positives = 83/154 (53%), Gaps = 5/154 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F +G I ++ D++ +G+GFV F ++ +E + ++ R V V R R Sbjct: 119 FSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176 Query: 178 EEMSSKDGPKTRK---IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 +E ++ G + ++ +++ + ++ L+D F +G + ++M D S G+S+GFGF Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGF 235 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 V+FE + ++ + E ++L GKQ+ + +A+ K Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269 Score = 64.7 bits (156), Expect = 1e-10 Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 15/173 (8%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 FGK+G +M D+ K +GFGFV+F K +++ + ++G+ + V R + Sbjct: 211 FGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269 Query: 178 EEMSS---------KDGPKTR----KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 E + K TR ++V L + ++ LR FS +G + ++M++ Sbjct: 270 VERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG 329 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSN 477 GRS+GFGFV F S + + ++E R + K + + A+ K+ H +N Sbjct: 330 --GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTN 380 Score = 61.6 bits (148), Expect = 1e-09 Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 5/155 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F G I + +D T+ G+ +V F P+ + E +D +V + P Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA------DAERALDTMNFDVIKGKPVRI 84 Query: 184 MSSKDGPKTRK-----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 M S+ P RK IF+ L ++ L D FS++GN++ +++ D + S+G+GF Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGF 142 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 V FE++++ ER I + L ++V + + + +K Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 72.4 bits (176), Expect = 6e-13 Identities = 40/154 (25%), Positives = 83/154 (53%), Gaps = 5/154 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F +G I ++ D++ +G+GFV F ++ +E + ++ R V V R R Sbjct: 119 FSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176 Query: 178 EEMSSKDGPKTRK---IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 +E ++ G + ++ +++ + ++ L+D F +G + ++M D S G+S+GFGF Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGF 235 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 V+FE + ++ + E ++L GKQ+ + +A+ K Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269 Score = 64.7 bits (156), Expect = 1e-10 Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 15/173 (8%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 FGK+G +M D+ K +GFGFV+F K +++ + ++G+ + V R + Sbjct: 211 FGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269 Query: 178 EEMSS---------KDGPKTR----KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 E + K TR ++V L + ++ LR FS +G + ++M++ Sbjct: 270 VERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG 329 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSN 477 GRS+GFGFV F S + + ++E R + K + + A+ K+ H +N Sbjct: 330 --GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTN 380 Score = 61.6 bits (148), Expect = 1e-09 Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 5/155 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F G I + +D T+ G+ +V F P+ + E +D +V + P Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA------DAERALDTMNFDVIKGKPVRI 84 Query: 184 MSSKDGPKTRK-----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 M S+ P RK IF+ L ++ L D FS++GN++ +++ D + S+G+GF Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGF 142 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 V FE++++ ER I + L ++V + + + +K Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 72.4 bits (176), Expect = 6e-13 Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 5/94 (5%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 K+F+GGL + LRD F+ +G+VV+ +++VD TGRSRGFGFV F E + ISE Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 Query: 394 GRMRDLGGKQVEIKKAE-----PKKHGGDHSSNG 480 ++L G+ + + A P+ +GG +G Sbjct: 96 MDGKELNGRHIRVNPANDRPSAPRAYGGGGGYSG 129 Score = 38.1 bits (87), Expect = 0.013 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPR 177 F +G + D+ ++ D+ T RGFGFV F+D + D ++GR + V Sbjct: 55 FAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN----- 109 Query: 178 EEMSSKDGPKTRKIFVGG 231 + D P + + GG Sbjct: 110 ---PANDRPSAPRAYGGG 124
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 72.0 bits (175), Expect = 8e-13 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 8/165 (4%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVI--------DKVLEDEHNIDGRTVEV 159 F G + D ++ D++++ RG +V F D S + +VL + E Sbjct: 173 FSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQRVLGVPIIVQASQAEK 232 Query: 160 KRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRG 339 R K +++VG L +TED LR F +G + Q+M+D TGRS+G Sbjct: 233 NRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKG 292 Query: 340 FGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSS 474 +GF+TF + ++ + + +L G+ +++ + SS Sbjct: 293 YGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 71.6 bits (174), Expect = 1e-12 Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 15/173 (8%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEH--NIDGRTVEVKRTVPR 177 FG+YGA +M D H K RGFGFV+F K ++D + +++G+ + V R + Sbjct: 211 FGQYGAALSVKVMTDDHGKS-RGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269 Query: 178 EEMSS---------KDGPKTR----KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 E + K TR ++V L + ++ LR F+ +G++ ++M++ Sbjct: 270 VERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG 329 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSN 477 GRS+GFGFV F S + + ++E R + K + + A+ K+ H +N Sbjct: 330 --GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTN 380 Score = 68.2 bits (165), Expect = 1e-11 Identities = 38/154 (24%), Positives = 81/154 (52%), Gaps = 5/154 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F +G I ++ D++ +G+GFV F ++ ++ + ++ R V V R R Sbjct: 119 FSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176 Query: 178 EEMSSKDGPKTRK---IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 +E ++ G + ++ +++ + ++ L++ F YG + ++M D G+SRGFGF Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGF 235 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 V+FE + ++ + + +DL GK + + +A+ K Sbjct: 236 VSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269 Score = 61.6 bits (148), Expect = 1e-09 Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 5/155 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F G I + +D T+ G+ +V F P+ + E +D +V + P Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA------DAERALDTMNFDVIKGKPVRI 84 Query: 184 MSSKDGPKTRK-----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 M S+ P RK IF+ L ++ L D FS++GN++ +++ D + S+G+GF Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGF 142 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 V FE++++ ER I + L ++V + + + +K Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 71.2 bits (173), Expect = 1e-12 Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNI--DGRTVEVKRTVPR 177 F G + + +++DK G+GFV + ++ + + + +T++V P Sbjct: 40 FSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPS 99 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 E+ K +++ GLP T+T+ D+ D FS +G ++ +++VD +TG SRG F+ F Sbjct: 100 SEVI-----KDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154 Query: 358 ESEDSVERVIS 390 + E I+ Sbjct: 155 DKRSEAEEAIT 165 Score = 49.7 bits (117), Expect = 4e-06 Identities = 26/77 (33%), Positives = 40/77 (51%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 + V LP +T+++LR FSS G V +++ D G S G+GFV + + ER IS Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81 Query: 397 RMRDLGGKQVEIKKAEP 447 L K +++ A P Sbjct: 82 NGLRLQSKTIKVSYARP 98 Score = 37.0 bits (84), Expect = 0.029 Identities = 22/80 (27%), Positives = 36/80 (45%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 IF+ L E L F +G V +++ D +T + +GFGFVT + + I+ Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305 Query: 397 RMRDLGGKQVEIKKAEPKKH 456 LG K +++ K H Sbjct: 306 NGYRLGDKILQVSFKTNKSH 325 Score = 34.3 bits (77), Expect = 0.19 Identities = 13/31 (41%), Positives = 23/31 (74%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSD 96 FG +GA+T+ +++D +T +GFGFVT ++ Sbjct: 264 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 294
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 71.2 bits (173), Expect = 1e-12 Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNI--DGRTVEVKRTVPR 177 F G + + +++DK G+GFV + ++ + + + +T++V P Sbjct: 40 FSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 99 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 E+ K +++ GLP T+T+ D+ D FS +G ++ +++VD +TG SRG F+ F Sbjct: 100 SEVI-----KDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154 Query: 358 ESEDSVERVIS 390 + E I+ Sbjct: 155 DKRSEAEEAIT 165 Score = 50.1 bits (118), Expect = 3e-06 Identities = 26/77 (33%), Positives = 40/77 (51%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 + V LP +T+D+LR FSS G V +++ D G S G+GFV + + ER I+ Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 Query: 397 RMRDLGGKQVEIKKAEP 447 L K +++ A P Sbjct: 82 NGLRLQSKTIKVSYARP 98 Score = 37.7 bits (86), Expect = 0.017 Identities = 22/80 (27%), Positives = 36/80 (45%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 IF+ L E L F +G V +++ D +T + +GFGFVT + + I+ Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305 Query: 397 RMRDLGGKQVEIKKAEPKKH 456 LG K +++ K H Sbjct: 306 NGYRLGDKILQVSFKTNKSH 325 Score = 34.3 bits (77), Expect = 0.19 Identities = 13/31 (41%), Positives = 23/31 (74%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSD 96 FG +GA+T+ +++D +T +GFGFVT ++ Sbjct: 264 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 294
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 71.2 bits (173), Expect = 1e-12 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 14/173 (8%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVL--EDEHNIDGRTVEVKRTVPR 177 F +YG I + ++ D + +G+G+V F P + IDGR V + + PR Sbjct: 283 FEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPR 342 Query: 178 --------EEMSSKDGPKTRK----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHS 321 ++ + G + + +FVG L TEDDL F G++ ++ D Sbjct: 343 PANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQ 402 Query: 322 TGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNG 480 +GR +GFG+VTF DS ++ + E + G+ + + P+ GG G Sbjct: 403 SGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRPCRLDFSTPRTGGGSRGGRG 454 Score = 58.2 bits (139), Expect = 1e-08 Identities = 24/87 (27%), Positives = 51/87 (58%) Frame = +1 Query: 190 SKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESED 369 S+D +T +FVG L + + L F YG +V ++++D +GRS+G+G+V FE+ + Sbjct: 256 SQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315 Query: 370 SVERVISEGRMRDLGGKQVEIKKAEPK 450 + + ++ +++ G+ V + + P+ Sbjct: 316 AAKAAVAANGTKEIDGRMVNLDLSNPR 342
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 71.2 bits (173), Expect = 1e-12 Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 15/170 (8%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNID-------------- 141 FGK+G I+ +V+M+D+ R FGFV F +E + I Sbjct: 249 FGKFGVISSAVVMRDQSGNS-RCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKK 307 Query: 142 -GRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 R E++R +E ++ + + +++ L ++ ++ L++ FS YGNV ++M++ Sbjct: 308 SEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP 367 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDH 468 G SRGFGFV + + + R +SE + +G K + I A+ K+ H Sbjct: 368 Q-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAH 416 Score = 52.4 bits (124), Expect = 7e-07 Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 5/124 (4%) Frame = +1 Query: 70 GFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREEMSSKDGPKTR-----KIFVGGL 234 G+ ++ FS+P+ + +E + T R + R +S++D P TR IF+ L Sbjct: 90 GYAYINFSNPNDAYRAMEALNY----TPLFDRPI-RIMLSNRD-PSTRLSGKGNIFIKNL 143 Query: 235 PSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLG 414 +++ L + FSS+G ++ ++ +D TGRS+G+GFV FE E+S + I + + Sbjct: 144 DASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMN 202 Query: 415 GKQV 426 KQV Sbjct: 203 DKQV 206
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 70.9 bits (172), Expect = 2e-12 Identities = 40/154 (25%), Positives = 81/154 (52%), Gaps = 5/154 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F +G I ++ D+H RG+GFV F ++ ++ + ++ R V V R Sbjct: 119 FSAFGNILSCKVVCDEHGS--RGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSR 176 Query: 178 EEMSSKDGPKTRK---IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 E + G K + +++ + + LR+ FS++GN + ++M+D TGRSRGFGF Sbjct: 177 RERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGF 235 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 V + + + ++ +SE +++ G+ + + +A+ + Sbjct: 236 VNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269 Score = 59.7 bits (143), Expect = 4e-09 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 15/165 (9%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F +G +M D T RGFGFV + + K + + + ++GR + V R R Sbjct: 211 FSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269 Query: 178 EEMSSKDGPKTRKI-------------FVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 E + K +I +V L + +D LR FS YG + ++M + Sbjct: 270 IERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG 329 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 G S+GFGFV F S + + ++E R + K + + A+ K+ Sbjct: 330 --GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372 Score = 57.0 bits (136), Expect = 3e-08 Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 5/133 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F G I + +D T+ G+ ++ F P+ + E +D EV + P Sbjct: 31 FSPAGPIMSIRVCRDIATRRSLGYAYINFQQPA------DAERALDTMNFEVIKGRPIRI 84 Query: 184 MSSKDGPKTRK-----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 M S+ P RK +F+ L ++ L D FS++GN++ +++ D SRG+GF Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH--GSRGYGF 142 Query: 349 VTFESEDSVERVI 387 V FE++++ R I Sbjct: 143 VHFETQEAANRAI 155
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 70.9 bits (172), Expect = 2e-12 Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 8/165 (4%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVI--------DKVLEDEHNIDGRTVEV 159 F G + D ++ D++++ +G +V F D S + +VL + E Sbjct: 173 FSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEK 232 Query: 160 KRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRG 339 R K +++VG L +TED LR F +G + Q+M+D TGRS+G Sbjct: 233 NRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKG 292 Query: 340 FGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSS 474 +GF+TF + ++ + + +L G+ +++ + SS Sbjct: 293 YGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 70.9 bits (172), Expect = 2e-12 Identities = 39/154 (25%), Positives = 83/154 (53%), Gaps = 5/154 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F +G I ++ D++ +G+GFV F ++ +E + ++ R V V R R Sbjct: 119 FSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176 Query: 178 EEMSSKDGPKTRK---IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 +E ++ G + ++ +++ + ++ L++ F +G + ++M D S G+S+GFGF Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGF 235 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 V+FE + ++ + E ++L GKQ+ + +A+ K Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269 Score = 64.7 bits (156), Expect = 1e-10 Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 15/173 (8%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 FGK+G +M D+ K +GFGFV+F K +++ + ++G+ + V R + Sbjct: 211 FGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269 Query: 178 EEMSS---------KDGPKTR----KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 E + K TR ++V L + ++ LR FS +G + ++M++ Sbjct: 270 VERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG 329 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSN 477 GRS+GFGFV F S + + ++E R + K + + A+ K+ H +N Sbjct: 330 --GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTN 380 Score = 61.6 bits (148), Expect = 1e-09 Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 5/155 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F G I + +D T+ G+ +V F P+ + E +D +V + P Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA------DAERALDTMNFDVIKGKPVRI 84 Query: 184 MSSKDGPKTRK-----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 M S+ P RK IF+ L ++ L D FS++GN++ +++ D + S+G+GF Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGF 142 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 V FE++++ ER I + L ++V + + + +K Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 70.9 bits (172), Expect = 2e-12 Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 31/180 (17%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKR---T 168 F + G + ++ DK + RGFGFVT S ++ + + + IDGR + V Sbjct: 108 FERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAP 167 Query: 169 VPREEMS-------------SKDG-------------PKTRKIFVGGLPSTLTEDDLRDH 270 RE S +DG + +++VG L + + L++ Sbjct: 168 AKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKEL 227 Query: 271 FSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 FS GNVV+ +++ D +GRSRGFGFVT+ S V I DL G+ + + AE + Sbjct: 228 FSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287 Score = 53.9 bits (128), Expect = 2e-07 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 K+FVG LP ++ L F GNV +++ D +GRSRGFGFVT +++ VE + Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148 Query: 394 GRMRDLGGKQVEIKKA-EPKKHGGDHSSNGRSSHS 495 ++ G+ + + P K GR +S Sbjct: 149 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNS 183
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 70.5 bits (171), Expect = 2e-12 Identities = 34/89 (38%), Positives = 53/89 (59%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 + FVGGL + +L FS +G V++ +I+ D TGRSRGFGFVTF+ E S++ I E Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66 Query: 394 GRMRDLGGKQVEIKKAEPKKHGGDHSSNG 480 ++L G+ + + +A+ + GG G Sbjct: 67 MNGKELDGRTITVNEAQSRGGGGGGGRGG 95 Score = 46.6 bits (109), Expect = 4e-05 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEH--NIDGRTVEVKRTVPR 177 F ++G + DS I+ D+ T RGFGFVTF D + +++ + +DGRT+ V R Sbjct: 26 FSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSR 85
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 70.1 bits (170), Expect = 3e-12 Identities = 35/89 (39%), Positives = 51/89 (57%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 + FVGGL + L FS YG V++ +I+ D TGRSRGFGFVTF+ E S++ I Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 394 GRMRDLGGKQVEIKKAEPKKHGGDHSSNG 480 +DL G+ + + +A+ + GG G Sbjct: 69 MNGQDLDGRSITVNEAQSRGSGGGGGGRG 97 Score = 47.4 bits (111), Expect = 2e-05 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPR 177 F +YG + DS I+ D+ T RGFGFVTF D + +E + ++DGR++ V R Sbjct: 28 FSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 70.1 bits (170), Expect = 3e-12 Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 7/150 (4%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNID--GRTVEVKRTVPR 177 FG+ G + + +D T+ G+G+V F++P + +++ + I G+ + V Sbjct: 56 FGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRV------ 109 Query: 178 EEMSSKDGPKTRK-----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGF 342 M S P R+ IF+ L ++ L D FSS+GN+V ++ VD S+G+S+G+ Sbjct: 110 --MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGY 166 Query: 343 GFVTFESEDSVERVISEGRMRDLGGKQVEI 432 GFV + +E+S ++ I + L KQV + Sbjct: 167 GFVQYANEESAQKAIEKLNGMLLNDKQVYV 196 Score = 67.4 bits (163), Expect = 2e-11 Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 15/159 (9%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPR 177 FG+YG IT +V+MKD K +GFGFV F + + +E + H D + V R + Sbjct: 235 FGEYGKITSAVVMKDGEGKS-KGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKK 293 Query: 178 EEMSSK-------------DGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 E ++ D ++ ++V L +++++ L++ FS +G V ++M D Sbjct: 294 SERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP 353 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIK 435 + G S+G GFV F + + +S+ L GK +E K Sbjct: 354 N-GTSKGSGFVAFATPEEATEAMSQ-----LSGKMIESK 386 Score = 65.1 bits (157), Expect = 1e-10 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 3/152 (1%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F +G I + D + +G+GFV +++ K +E + ++ + V V + R Sbjct: 144 FSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRR 202 Query: 178 EEM-SSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 +E S+ + K ++V L + T+DDL++ F YG + +M D G+S+GFGFV Sbjct: 203 QERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVN 261 Query: 355 FESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 FE+ D R + K+ + +A+ K Sbjct: 262 FENADDAARAVESLNGHKFDDKEWYVGRAQKK 293 Score = 43.9 bits (102), Expect = 2e-04 Identities = 24/72 (33%), Positives = 35/72 (48%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 ++VG L +T+ L D F G VV ++ D T RS G+G+V F + R I E Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97 Query: 397 RMRDLGGKQVEI 432 L GK + + Sbjct: 98 NYIPLYGKPIRV 109
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 69.7 bits (169), Expect = 4e-12 Identities = 32/89 (35%), Positives = 51/89 (57%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 + FVGGL + L F+++G V++ +++ D TGRSRGFGFVTF SE S+ I Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68 Query: 394 GRMRDLGGKQVEIKKAEPKKHGGDHSSNG 480 ++L G+ + + +A+ + GG G Sbjct: 69 MNGKELDGRNITVNQAQSRGGGGGGGGYG 97 Score = 42.7 bits (99), Expect = 5e-04 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTF-SDPSVIDKVLE-DEHNIDGRTVEVKRTVPR 177 F +G + DS ++ D+ T RGFGFVTF S+ S++D + + +DGR + V + R Sbjct: 28 FANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 69.7 bits (169), Expect = 4e-12 Identities = 40/154 (25%), Positives = 81/154 (52%), Gaps = 5/154 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F +G I ++ D+H RG+GFV F ++ ++ + ++ R V V R Sbjct: 119 FSAFGNILSCKVVCDEHGS--RGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSR 176 Query: 178 EEMSSKDGPKTRK---IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 E + G K + +++ + + LR+ FS++GN + ++M+D S GRSRGFGF Sbjct: 177 RERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDS-GRSRGFGF 235 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 V + + + ++ +SE +++ G+ + + +A+ + Sbjct: 236 VNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269 Score = 57.8 bits (138), Expect = 2e-08 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 15/165 (9%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F +G +M D + RGFGFV + + K + + + ++GR + V R R Sbjct: 211 FSAFGNTLSVKVMMDDSGRS-RGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269 Query: 178 EEMSSKDGPKTRKI-------------FVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 E S+ K +I +V L + +D LR F YG + ++M + Sbjct: 270 IERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG 329 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 G S+GFGFV F S + + ++E R + K + + A+ K+ Sbjct: 330 --GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372 Score = 53.9 bits (128), Expect = 2e-07 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 5/133 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F G I + +D T+ + ++ F P+ + E +D EV + P Sbjct: 31 FSPAGPIMSIRVCRDIATRRSLSYAYINFQQPA------DAERALDTMNFEVIKGRPIRI 84 Query: 184 MSSKDGPKTRK-----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 M S+ P RK +F+ L ++ L D FS++GN++ +++ D SRG+GF Sbjct: 85 MWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH--GSRGYGF 142 Query: 349 VTFESEDSVERVI 387 V FE+ ++ R I Sbjct: 143 VHFETHEAANRAI 155
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 69.7 bits (169), Expect = 4e-12 Identities = 42/129 (32%), Positives = 59/129 (45%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F G I IMKD T G+ FV F+ ++ ++G TV KR Sbjct: 122 FRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIK---TVNGITVRNKRLKVSYA 178 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 + K ++V LP T+T+D+L F YGN+V+ I+ D TGR RG FV F Sbjct: 179 RPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNK 238 Query: 364 EDSVERVIS 390 + + IS Sbjct: 239 REEAQEAIS 247 Score = 36.2 bits (82), Expect = 0.049 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNI 138 FGKYG I I++DK T PRG FV F+ + + +N+ Sbjct: 208 FGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALNNV 252
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 69.3 bits (168), Expect = 5e-12 Identities = 35/133 (26%), Positives = 75/133 (56%), Gaps = 5/133 (3%) Frame = +1 Query: 67 RGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPREEMSSKDGPKTRK---IFVGG 231 +G+GFV F ++ ++ + ++GR V V + R+E ++ G + ++ +++ Sbjct: 138 KGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKN 197 Query: 232 LPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDL 411 + ++ L+D F +G + ++M D S G+S+GFGFV+FE + ++ + E ++L Sbjct: 198 FGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKEL 256 Query: 412 GGKQVEIKKAEPK 450 GKQ+ + +A+ K Sbjct: 257 NGKQIYVGRAQKK 269 Score = 62.4 bits (150), Expect = 6e-10 Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 15/173 (8%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTV-------- 153 FGK+G +M D+ K +GFGFV+F K +++ + ++G+ + Sbjct: 211 FGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269 Query: 154 -----EVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 E+KRT + + + ++V L + ++ LR FS +G + ++M++ Sbjct: 270 VERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG 329 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSN 477 GRS+GFGFV F S + + ++E R + K + + A+ K+ + +N Sbjct: 330 --GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTN 380 Score = 56.6 bits (135), Expect = 4e-08 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 5/155 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F G I I +D T + +V F + EH +D +V + P Sbjct: 31 FSPAGPILSIRICRDLITSGSSNYAYVNFQHTK------DAEHALDTMNFDVIKGKPVRI 84 Query: 184 MSSKDGPKTRK-----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 M S+ P RK IFV L ++ L D S++GN++ ++ D + S+G+GF Sbjct: 85 MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGF 142 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 V FE+ ++ ER I + L G++V + + + +K Sbjct: 143 VHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK 177
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 69.3 bits (168), Expect = 5e-12 Identities = 38/154 (24%), Positives = 83/154 (53%), Gaps = 5/154 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F +G I ++ D++ +G+GFV F ++ +E + ++ R V V R + Sbjct: 119 FSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQ 176 Query: 178 EEMSSKDGPKTRK---IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 +E ++ G + ++ +++ + ++ L++ F +G + ++M D S G+S+GFGF Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGF 235 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 V+FE + ++ + E ++L GKQ+ + +A+ K Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269 Score = 64.7 bits (156), Expect = 1e-10 Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 15/173 (8%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 FGK+G +M D+ K +GFGFV+F K +++ + ++G+ + V R + Sbjct: 211 FGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269 Query: 178 EEMSS---------KDGPKTR----KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 E + K TR ++V L + ++ LR FS +G + ++M++ Sbjct: 270 VERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG 329 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSN 477 GRS+GFGFV F S + + ++E R + K + + A+ K+ H +N Sbjct: 330 --GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTN 380 Score = 61.2 bits (147), Expect = 1e-09 Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 5/155 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F G I + +D T+ G+ +V F P+ + E +D +V + P Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA------DAERALDTMNFDVIKGKPVRI 84 Query: 184 MSSKDGPKTRK-----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 M S+ P RK IF+ L ++ L D FS++GN++ +++ D + S+G+GF Sbjct: 85 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGF 142 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 V FE++++ ER I + L ++V + + + +K Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQK 177
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 68.9 bits (167), Expect = 7e-12 Identities = 44/173 (25%), Positives = 86/173 (49%), Gaps = 15/173 (8%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F ++G +M+D + K +GFGFV++ +K +E+ + I G+ + V R + Sbjct: 211 FSQFGKTLSVKVMRDPNGKS-KGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269 Query: 178 EEMSSKDGPKTRKI-------------FVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 E ++ K ++ ++ L T+ ++ LR FS +G++ ++M++ Sbjct: 270 VERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED 329 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSN 477 GRS+GFGFV F S + + ++E R +G K + + A+ K+ H +N Sbjct: 330 --GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTN 380 Score = 56.2 bits (134), Expect = 5e-08 Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 5/155 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F G + + +D T+ G+ +V F P+ + E +D +V + P Sbjct: 31 FSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA------DAERALDTMNFDVIKGKPIRI 84 Query: 184 MSSKDGPKTRK-----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 M S+ P RK +F+ L ++ L D FS++GN++ +++ D + S+G+ F Sbjct: 85 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAF 142 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 V FE++++ ++ I + L ++V + + + +K Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 68.6 bits (166), Expect = 9e-12 Identities = 41/129 (31%), Positives = 60/129 (46%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F G I IMKD T G+ FV F+ ++ +++G TV KR Sbjct: 105 FRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIK---SLNGVTVRNKRLKVSYA 161 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 + K ++V LP T+T+D+L F YGN+V+ I+ D TG+ RG FV F Sbjct: 162 RPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNK 221 Query: 364 EDSVERVIS 390 + + IS Sbjct: 222 REEAQEAIS 230 Score = 36.2 bits (82), Expect = 0.049 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNI 138 FGKYG I I++DK T PRG FV F+ + + +N+ Sbjct: 191 FGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNV 235
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 68.6 bits (166), Expect = 9e-12 Identities = 33/89 (37%), Positives = 52/89 (58%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 + FVGGL + L F+ YG+V++ +I+ D TGRSRGFGFVTF+ E +++ I Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68 Query: 394 GRMRDLGGKQVEIKKAEPKKHGGDHSSNG 480 +DL G+ + + +A+ + GG G Sbjct: 69 MNGQDLDGRSITVNEAQSRGSGGGGGHRG 97 Score = 47.8 bits (112), Expect = 2e-05 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPR 177 F +YG + DS I+ D+ T RGFGFVTF D + +E + ++DGR++ V R Sbjct: 28 FAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 68.2 bits (165), Expect = 1e-11 Identities = 37/154 (24%), Positives = 82/154 (53%), Gaps = 5/154 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F +G I ++ D++ +G+GFV F ++ ++ + ++ R V V R R Sbjct: 119 FSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176 Query: 178 EEMSSKDGPKTRK---IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 +E ++ G + ++ +++ + ++ L++ F YG + ++M D + G+S+GFGF Sbjct: 177 KEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGF 235 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 V+FE + ++ + E +D+ GK + + +A+ K Sbjct: 236 VSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK 269 Score = 63.5 bits (153), Expect = 3e-10 Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 15/173 (8%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNID--------GRT--- 150 FGKYG +M D + K +GFGFV+F K +++ + D GR Sbjct: 211 FGKYGPALSVKVMTDDNGKS-KGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK 269 Query: 151 VEVKRTVPREEMSSKDGPKTR----KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 VE + + R+ K TR ++V L + ++ LR F +G + ++M++ Sbjct: 270 VERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG 329 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSN 477 GRS+GFGFV F S + + ++E R + K + + A+ K+ H +N Sbjct: 330 --GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTN 380 Score = 61.2 bits (147), Expect = 1e-09 Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 8/158 (5%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNID---GRTVEVKRTVP 174 F G I + +D T+ G+ +V F P+ ++ L D N D GR V + Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL-DTMNFDVIKGRPVRI----- 84 Query: 175 REEMSSKDGPKTRK-----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRG 339 M S+ P RK IF+ L ++ L D FS++GN++ +++ D + S+G Sbjct: 85 ---MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKG 139 Query: 340 FGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 +GFV FE++++ ER I + L ++V + + + +K Sbjct: 140 YGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 68.2 bits (165), Expect = 1e-11 Identities = 31/83 (37%), Positives = 50/83 (60%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 + FVGGL ++ L FS +G++ + +I+ D TGRSRGFGFVTF+ E S+ I Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66 Query: 394 GRMRDLGGKQVEIKKAEPKKHGG 462 ++L G+ + + +A+ + GG Sbjct: 67 MNGQELDGRNITVNEAQSRGSGG 89 Score = 47.0 bits (110), Expect = 3e-05 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPR 177 F ++G ITDS I+ D+ T RGFGFVTF D + +E + +DGR + V R Sbjct: 26 FSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 68.2 bits (165), Expect = 1e-11 Identities = 34/89 (38%), Positives = 50/89 (56%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 + FVGGL E L FS +G +V+ +I+ D TGRSRGFGFVTF+ E S++ I Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 394 GRMRDLGGKQVEIKKAEPKKHGGDHSSNG 480 +DL G+ + + +A+ + G G Sbjct: 69 MNGQDLDGRSITVNEAQSRGSGAGGGGRG 97 Score = 45.8 bits (107), Expect = 6e-05 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPR 177 F ++G + DS I+ D+ T RGFGFVTF D + +E + ++DGR++ V R Sbjct: 28 FSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 67.8 bits (164), Expect = 2e-11 Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 7/126 (5%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN-----IDGRTVEVKR 165 HF +G I D +++DKHTK +G FV F+ S + +E+ H D + ++V Sbjct: 44 HFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFI 103 Query: 166 TVPREEMSSKD--GPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRG 339 R S +D + +IFV +P + TE+DLR+ F YG++ ++ + TG S+G Sbjct: 104 AQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKG 162 Query: 340 FGFVTF 357 G+V + Sbjct: 163 LGYVRY 168 Score = 40.0 bits (92), Expect = 0.003 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 3/98 (3%) Frame = +1 Query: 175 REEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 R + S D P +IF+ + +E LR+HFS +G++ + ++ D T S+G FV Sbjct: 14 RPGVDSLDEPPNSRIFLV-ISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVK 72 Query: 355 FESEDSVERVISEGRMRDLG---GKQVEIKKAEPKKHG 459 F R + E + LG K +++ A+ + G Sbjct: 73 FARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSG 110
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 67.4 bits (163), Expect = 2e-11 Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 3/104 (2%) Frame = +1 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 MSS++G K+FVGGL E L DHFSS+G + E ++ D T RSRGFGF+TF + Sbjct: 1 MSSEEG----KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTN 56 Query: 364 EDSVERVISEGRMRDLGGKQVEIK---KAEPKKHGGDHSSNGRS 486 + + L G+Q+ + K+ GG GRS Sbjct: 57 PEHASDAMRAMNGESLDGRQIRVDHAGKSARGSRGGAFGGRGRS 100 Score = 48.1 bits (113), Expect = 1e-05 Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEV 159 HF +G I++ V++KD+ T+ RGFGF+TF++P + + ++DGR + V Sbjct: 25 HFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRV 79
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 67.0 bits (162), Expect = 3e-11 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 16/179 (8%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNID---GRTVEVKRTVP 174 F YG IT +M + K +GFGFV F + ++ + D G+++ V R Sbjct: 203 FEPYGKITSYKVMSKEDGKS-KGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQK 261 Query: 175 REEMSSKDGPKTRKI-------------FVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVD 315 + E + K ++ +V L T+ +D LR FS YGN+ ++M D Sbjct: 262 KAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTD 321 Query: 316 HSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGRSSH 492 GRS+GFGFV F + ++E R +G K + + A+ K+ H ++ H Sbjct: 322 EE-GRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRH 379 Score = 65.1 bits (157), Expect = 1e-10 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 5/155 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F G + + +D T+ G+ +V F P+ + E +D ++ R P Sbjct: 22 FSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPA------DAERALDTMNFDLVRNKPIRI 75 Query: 184 MSSKDGPKTRK-----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 M S+ P R+ +F+ L + + D FS++GN++ ++ D G S+G+GF Sbjct: 76 MWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEK-GNSKGYGF 134 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 V FE+E++ I + L GK+V + K P+K Sbjct: 135 VHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRK 169 Score = 42.0 bits (97), Expect = 9e-04 Identities = 21/57 (36%), Positives = 31/57 (54%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVI 387 ++VG LP + E L D FSS G V+ ++ D T RS G+ +V F+ ER + Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERAL 60
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 67.0 bits (162), Expect = 3e-11 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Frame = +1 Query: 67 RGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPS 240 +G+ F+ F+ + L ++ I+GRT+ ++ PR +++ P ++ +FV GL Sbjct: 522 KGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQP-SKTLFVKGLSE 580 Query: 241 TLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGK 420 TE+ L++ F V +I+ D TG S+GFGFV F SE+ + ++ G Sbjct: 581 DTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 637 Query: 421 QVEIKKAEPKKHGG 462 +V + A+PK GG Sbjct: 638 KVTLDWAKPKGEGG 651 Score = 35.0 bits (79), Expect = 0.11 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 12/104 (11%) Frame = +1 Query: 175 REEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQI------------MVDH 318 +E K+ P+ +K V G ST + + + +V E ++ +VD Sbjct: 282 KEMTKQKEVPEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVVDV 341 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 TG +R FG+V FES + +E+ + ++ G EIK +PK Sbjct: 342 RTGTNRKFGYVDFESAEDLEKALELTGLKVFGN---EIKLEKPK 382 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = +1 Query: 37 IMKDKHTKMPRGFGFVTFS---DPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 I+ D+ T +GFGFV F+ D + +ED IDG V + P+ E Sbjct: 599 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED-GEIDGNKVTLDWAKPKGE 649
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 67.0 bits (162), Expect = 3e-11 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Frame = +1 Query: 67 RGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPS 240 +G+ F+ F+ + L ++ I+GRT+ ++ PR +++ P ++ +FV GL Sbjct: 525 KGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQP-SKTLFVKGLSE 583 Query: 241 TLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGK 420 TE+ L++ F V +I+ D TG S+GFGFV F SE+ + ++ G Sbjct: 584 DTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 640 Query: 421 QVEIKKAEPKKHGG 462 +V + A+PK GG Sbjct: 641 KVTLDWAKPKGEGG 654 Score = 33.5 bits (75), Expect = 0.32 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 16/126 (12%) Frame = +1 Query: 121 EDEHNIDGRTVEVKRTVP----REEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGN 288 +DE + E + P +E K+ P+ +K + G T + + + + Sbjct: 263 DDEDEDEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKIEGSEPTTPFNLFIGNLNPNKS 322 Query: 289 VVEHQIM------------VDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEI 432 V E ++ VD TG +R FG+V FES + +E+ + ++ G EI Sbjct: 323 VAELKVAISELFAKNDLAAVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGN---EI 379 Query: 433 KKAEPK 450 K +PK Sbjct: 380 KLEKPK 385 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = +1 Query: 37 IMKDKHTKMPRGFGFVTFS---DPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 I+ D+ T +GFGFV F+ D + +ED IDG V + P+ E Sbjct: 602 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED-GEIDGNKVTLDWAKPKGE 652
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 66.6 bits (161), Expect = 3e-11 Identities = 38/154 (24%), Positives = 82/154 (53%), Gaps = 5/154 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F +G I ++ D++ RG+GFV F ++ ++ + ++ R V V R Sbjct: 119 FSAFGDILSCKVVCDEYGS--RGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSR 176 Query: 178 EEMSSKDGPKTRK---IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 E + G K + +++ + + L++ FS++GN + ++M+D+S GRSRGFGF Sbjct: 177 RERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNS-GRSRGFGF 235 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 V + + + ++ ++E +++ G+ V + +A+ + Sbjct: 236 VNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKR 269 Score = 58.9 bits (141), Expect = 7e-09 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 15/165 (9%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F +G +M D + RGFGFV + + K + + + ++GR V V R R Sbjct: 211 FSAFGNTLSVKVMMDNSGRS-RGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKR 269 Query: 178 EEMSSKDGPKTRKI-------------FVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 E + K +I +V L + +D LR FS YG + ++M + Sbjct: 270 IERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG 329 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 G S+GFGFV F S + + ++E R + K + + A+ K+ Sbjct: 330 --GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 66.2 bits (160), Expect = 4e-11 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 3/103 (2%) Frame = +1 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 MSS++G K+FVGGL E L DHFSS+G + E ++ D T RSRGFGF+TF + Sbjct: 1 MSSEEG----KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTN 56 Query: 364 EDSVERVISEGRMRDLGGKQVEIK---KAEPKKHGGDHSSNGR 483 + + L G+Q+ + K+ GG ++GR Sbjct: 57 PEHASVAMRAMNGESLDGRQIRVDHAGKSARGTRGGGFGAHGR 99 Score = 49.3 bits (116), Expect = 6e-06 Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 3/56 (5%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDP---SVIDKVLEDEHNIDGRTVEV 159 HF +G I++ V++KD+ T+ RGFGF+TF++P SV + + E ++DGR + V Sbjct: 25 HFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGE-SLDGRQIRV 79
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 66.2 bits (160), Expect = 4e-11 Identities = 35/92 (38%), Positives = 50/92 (54%) Frame = +1 Query: 169 VPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 VP M + K+++GGL E L+D FSS+ V E ++M + TGRSRG+GF Sbjct: 17 VPVSSMLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGF 76 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAE 444 V F SEDS IS ++L G + + A+ Sbjct: 77 VNFISEDSANSAISAMNGQELNGFNISVNVAK 108 Score = 29.3 bits (64), Expect = 6.0 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTF 90 F + +T++ +M +K T RG+GFV F Sbjct: 51 FSSFNGVTEARVMTNKVTGRSRGYGFVNF 79
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 66.2 bits (160), Expect = 4e-11 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNI-----DGRTVEVKRT 168 F +G I D +++DKHTK +G FV F+ S + +E+ H D + ++V Sbjct: 45 FSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIA 104 Query: 169 VPREEMSSKD--GPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGF 342 R S +D + +IFV +P + TE+DLR+ F YG++ I+ + TG S+G Sbjct: 105 QSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGL 163 Query: 343 GFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGR 483 G+V + + I E R E K + D+ SN R Sbjct: 164 GYVRYLKPSQAAQAI-ENCDRSFRAILAEPKNKASESSEQDYYSNMR 209
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 66.2 bits (160), Expect = 4e-11 Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Frame = +1 Query: 67 RGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPS 240 +G+ F+ F+ + L ++ I+GR + ++ PR +++ P ++ +FV GL Sbjct: 524 KGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQP-SKTLFVKGLSE 582 Query: 241 TLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGK 420 TE+ L++ S+ V +I+ D TG S+GFGFV F SE+ + ++ G Sbjct: 583 DTTEETLKE---SFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 639 Query: 421 QVEIKKAEPKKHGG 462 +V + A+PK GG Sbjct: 640 KVTLDWAKPKGEGG 653 Score = 32.0 bits (71), Expect = 0.92 Identities = 23/78 (29%), Positives = 37/78 (47%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +FVG L + +L+ S +VD G +R FG+V FES + +E+ + Sbjct: 310 LFVGNLNFNKSAPELKTGISDVF-AKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELT 368 Query: 397 RMRDLGGKQVEIKKAEPK 450 ++ G EIK +PK Sbjct: 369 GLKVFGN---EIKLEKPK 383 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = +1 Query: 37 IMKDKHTKMPRGFGFVTFS---DPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 I+ D+ T +GFGFV F+ D + +ED IDG V + P+ E Sbjct: 601 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED-GEIDGNKVTLDWAKPKGE 651
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 66.2 bits (160), Expect = 4e-11 Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Frame = +1 Query: 67 RGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPS 240 +G+ F+ F+ + L ++ I+GR + ++ PR +++ P ++ +FV GL Sbjct: 523 KGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQP-SKTLFVKGLSE 581 Query: 241 TLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGK 420 TE+ L++ S+ V +I+ D TG S+GFGFV F SE+ + ++ G Sbjct: 582 DTTEETLKE---SFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 638 Query: 421 QVEIKKAEPKKHGG 462 +V + A+PK GG Sbjct: 639 KVTLDWAKPKGEGG 652 Score = 32.3 bits (72), Expect = 0.71 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 13/127 (10%) Frame = +1 Query: 109 DKVLEDEHNIDGRTVEVKRTVPREEMSSKDGPKTRK-------------IFVGGLPSTLT 249 D+ E+E + E +E K P+ +K +FVG L + Sbjct: 260 DEDEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKS 319 Query: 250 EDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVE 429 +L+ S +VD G +R FG+V FES + +E+ + ++ G E Sbjct: 320 APELKTGISDVF-AKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGN---E 375 Query: 430 IKKAEPK 450 IK +PK Sbjct: 376 IKLEKPK 382 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = +1 Query: 37 IMKDKHTKMPRGFGFVTFS---DPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 I+ D+ T +GFGFV F+ D + +ED IDG V + P+ E Sbjct: 600 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED-GEIDGNKVTLDWAKPKGE 650
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 66.2 bits (160), Expect = 4e-11 Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Frame = +1 Query: 67 RGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPS 240 +G+ F+ F+ + L ++ I+GR + ++ PR +++ P ++ +FV GL Sbjct: 522 KGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQP-SKTLFVKGLSE 580 Query: 241 TLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGK 420 TE+ L++ S+ V +I+ D TG S+GFGFV F SE+ + ++ G Sbjct: 581 DTTEETLKE---SFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 637 Query: 421 QVEIKKAEPKKHGG 462 +V + A+PK GG Sbjct: 638 KVTLDWAKPKGEGG 651 Score = 32.0 bits (71), Expect = 0.92 Identities = 23/78 (29%), Positives = 37/78 (47%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +FVG L + +L+ S +VD G +R FG+V FES + +E+ + Sbjct: 308 LFVGNLNFNKSAPELKTGISDVF-AKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELT 366 Query: 397 RMRDLGGKQVEIKKAEPK 450 ++ G EIK +PK Sbjct: 367 GLKVFGN---EIKLEKPK 381 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = +1 Query: 37 IMKDKHTKMPRGFGFVTFS---DPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 I+ D+ T +GFGFV F+ D + +ED IDG V + P+ E Sbjct: 599 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED-GEIDGNKVTLDWAKPKGE 649
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 65.1 bits (157), Expect = 1e-10 Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 7/125 (5%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN-----IDGRTVEVKRT 168 F +G I D +++DKHTK +G FV F+ S + +E+ H D + ++V Sbjct: 45 FSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQCLGPSDTKPIKVFIA 104 Query: 169 VPREEMSSKD--GPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGF 342 R S +D + +IFV +P + TE+DLR+ F YG++ I+ + TG S+G Sbjct: 105 QSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGL 163 Query: 343 GFVTF 357 G+V + Sbjct: 164 GYVRY 168 Score = 29.3 bits (64), Expect = 6.0 Identities = 19/81 (23%), Positives = 36/81 (44%) Frame = +1 Query: 202 PKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVER 381 P ++FV P L D L D F +GN++E ++ + G+V + S Sbjct: 389 PVKERLFVVFNPHPLPLDVLEDIFCRFGNLIEVYLV------SGKNVGYVKYADRKSANE 442 Query: 382 VISEGRMRDLGGKQVEIKKAE 444 I+ + L G ++++ A+ Sbjct: 443 AITTLHGKILNGVRLKVMLAD 463
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 65.1 bits (157), Expect = 1e-10 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 8/161 (4%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVI--------DKVLEDEHNIDGRTVEV 159 F G + D I+ D++++ +G +V F + + ++L + E Sbjct: 186 FSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEK 245 Query: 160 KRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRG 339 R K +++VG L +TED LR F +G + +M D TGRS+G Sbjct: 246 NRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKG 305 Query: 340 FGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGG 462 +GF+TF + R + + +L G+ + + + GG Sbjct: 306 YGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGG 346
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 64.3 bits (155), Expect = 2e-10 Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 2/154 (1%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F G I IM+D T G+ FV F+ + ++ ++G TV KR Sbjct: 145 FRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKV---LNGITVRNKRLKVSYA 201 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 + K ++V LP T+T+D L F YG++V+ I+ D TGR RG FV + Sbjct: 202 RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNK 261 Query: 364 EDSVERVIS--EGRMRDLGGKQVEIKKAEPKKHG 459 + + IS + + G + + ++ AE +HG Sbjct: 262 REEAQEAISALNNVIPEGGSQPLSVRLAE--EHG 293
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 64.3 bits (155), Expect = 2e-10 Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 2/166 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVP 174 +F G I + IM DK+ K + FV + + L+ + I+ V++ Sbjct: 93 YFQVGGPIANIKIMIDKNNKNVN-YAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 151 Query: 175 REEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 ++ SS D T +FVG L + ++ LR+ F + + + +M D TG SRG+GFV+ Sbjct: 152 SQQSSSDD---TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVS 208 Query: 355 FESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGRSSH 492 F S+D + + + +DL G+ + I A + + +++ R ++ Sbjct: 209 FTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQRRNY 254 Score = 37.0 bits (84), Expect = 0.029 Identities = 22/87 (25%), Positives = 39/87 (44%) Frame = +1 Query: 169 VPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 VP ++ R ++VG L +TED L+ +F G + +IM+D ++ + F Sbjct: 60 VPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAF 118 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVE 429 V + ++ L GKQ+E Sbjct: 119 VEYHQSHDANIA-----LQTLNGKQIE 140
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 63.9 bits (154), Expect = 2e-10 Identities = 39/129 (30%), Positives = 60/129 (46%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F G I IM+D T G+ FV F+ + + ++ +++G TV KR Sbjct: 130 FRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIK---SLNGITVRNKRLKVSYA 186 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 + K ++V LP T+T+D L F YG +V+ I+ D TG+ RG FV F Sbjct: 187 RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNK 246 Query: 364 EDSVERVIS 390 + + IS Sbjct: 247 REEAQEAIS 255 Score = 36.6 bits (83), Expect = 0.037 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNI 138 FGKYG I I++DK T PRG FV F+ + + +N+ Sbjct: 216 FGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNV 260
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 63.9 bits (154), Expect = 2e-10 Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 8/147 (5%) Frame = +1 Query: 34 VIMKDKHTKMPRGFGFVTFSDPSVIDKVLE-DEHNIDGRTVEVKRTVPREEMSSKD---- 198 V K+ + +GF ++ F + + VLE E +++GR + +K + KD Sbjct: 172 VAAKNSNAMKNKGFCYMFFKNVEQMKAVLELSESHLNGRNMLIKDSENYSGRPDKDDLVA 231 Query: 199 ---GPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESED 369 P +R +FVG L +T+D LR HF G++V+ ++ +G+ +GF F+ F++E+ Sbjct: 232 MSKNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEE 291 Query: 370 SVERVISEGRMRDLGGKQVEIKKAEPK 450 + + R + G+ + ++ E + Sbjct: 292 GSTNELKDKSCRKIAGRPLRMEYGEDR 318
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 63.5 bits (153), Expect = 3e-10 Identities = 39/129 (30%), Positives = 59/129 (45%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F G I IM+D T G+ FV F+ + ++ ++G TV KR Sbjct: 147 FRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKV---LNGITVRNKRLKVSYA 203 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 + K ++V LP T+T+D L F YG++V+ I+ D TGR RG FV + Sbjct: 204 RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNK 263 Query: 364 EDSVERVIS 390 + + IS Sbjct: 264 REEAQEAIS 272 Score = 36.2 bits (82), Expect = 0.049 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNI 138 FGKYG+I I++DK T PRG FV ++ + + +N+ Sbjct: 233 FGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV 277
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 63.5 bits (153), Expect = 3e-10 Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 2/144 (1%) Frame = +1 Query: 37 IMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPREEMSSKDGPKT 210 + ++ H K P+G+ F+ F+ + L ++ I+GRT+ ++ + S+ + Sbjct: 514 VPQNPHGK-PKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL-----QGSNSRSQPS 567 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 + +FV GL TE+ L++ F V +I+ D TG S+GFGFV F SE+ + Sbjct: 568 KTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 624 Query: 391 EGRMRDLGGKQVEIKKAEPKKHGG 462 ++ G +V + A+PK GG Sbjct: 625 AMEDGEIDGNKVTLDWAKPKGEGG 648 Score = 35.8 bits (81), Expect = 0.064 Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 14/124 (11%) Frame = +1 Query: 121 EDEHNIDGRTVEVKRTVPREEMSS-KDGPKTRK-------------IFVGGLPSTLTEDD 258 +DE + V+ ++EM+ K+ P+ +K +F+G L + ++ Sbjct: 264 DDEEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNE 323 Query: 259 LRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKK 438 L+ S +VD TG +R FG+V FES + +E+ + ++ G EIK Sbjct: 324 LKFAISELF-AKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGN---EIKL 379 Query: 439 AEPK 450 +PK Sbjct: 380 EKPK 383
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 62.8 bits (151), Expect = 5e-10 Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 5/95 (5%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 K+F+GGL ED L F+ YG + E ++ D T RSRGFGFVTFE+ D + + Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 394 GRMRDLGGKQVEIK---KAEPKKHGG--DHSSNGR 483 + + G+Q+ + K+ ++ GG SS GR Sbjct: 66 MNGKSVDGRQIRVDQAGKSSGERRGGYRGGSSGGR 100 Score = 46.6 bits (109), Expect = 4e-05 Identities = 26/76 (34%), Positives = 45/76 (59%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F KYG I++ V++KD+ TK RGFGFVTF + +D + ++G++V+ ++ R + Sbjct: 25 FTKYGRISEVVVVKDRETKRSRGFGFVTFEN---VDDAKDAMMAMNGKSVDGRQI--RVD 79 Query: 184 MSSKDGPKTRKIFVGG 231 + K + R + GG Sbjct: 80 QAGKSSGERRGGYRGG 95
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 62.8 bits (151), Expect = 5e-10 Identities = 35/102 (34%), Positives = 51/102 (50%) Frame = +1 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 M+S +G K+FVGGL E L FS YG + E ++ D T RSRGFGFVTFE+ Sbjct: 1 MASDEG----KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN 56 Query: 364 EDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGRSS 489 D + + + + G+Q+ + +A G S+ Sbjct: 57 IDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98 Score = 45.4 bits (106), Expect = 8e-05 Identities = 25/76 (32%), Positives = 44/76 (57%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F KYG I++ V++KD+ T+ RGFGFVTF + ID + ++G++V+ ++ R + Sbjct: 26 FSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDAMMAMNGKSVDGRQI--RVD 80 Query: 184 MSSKDGPKTRKIFVGG 231 + K + + GG Sbjct: 81 QAGKSSDNRSRGYRGG 96
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 62.8 bits (151), Expect = 5e-10 Identities = 35/102 (34%), Positives = 51/102 (50%) Frame = +1 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 M+S +G K+FVGGL E L FS YG + E ++ D T RSRGFGFVTFE+ Sbjct: 1 MASDEG----KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN 56 Query: 364 EDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGRSS 489 D + + + + G+Q+ + +A G S+ Sbjct: 57 IDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98 Score = 45.4 bits (106), Expect = 8e-05 Identities = 25/76 (32%), Positives = 44/76 (57%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F KYG I++ V++KD+ T+ RGFGFVTF + ID + ++G++V+ ++ R + Sbjct: 26 FSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDAMMAMNGKSVDGRQI--RVD 80 Query: 184 MSSKDGPKTRKIFVGG 231 + K + + GG Sbjct: 81 QAGKSSDNRSRGYRGG 96
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 62.4 bits (150), Expect = 6e-10 Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 7/147 (4%) Frame = +1 Query: 31 SVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVP---REEMSSK 195 S+ M + P+G+ FV F + L +N I+GR + ++ + P + M+++ Sbjct: 486 SIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNAR 545 Query: 196 DG--PKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESED 369 G +++ +FV GL TE+ LR+ F + +I+ D TG S+GFGFV F S + Sbjct: 546 GGFNQQSKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPE 602 Query: 370 SVERVISEGRMRDLGGKQVEIKKAEPK 450 + ++ G +V + A+PK Sbjct: 603 DAKAAKEAMEDGEIDGNKVTLDFAKPK 629 Score = 53.1 bits (126), Expect = 4e-07 Identities = 35/142 (24%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Frame = +1 Query: 73 FGFVTFSDPSVIDKVLE-DEHNIDGRTVEVKRTVPREEMS-SKDGPKTRKIFVGGLPSTL 246 FG+V F +DK L+ + + G +++++ +E + +K R +FV LP + Sbjct: 323 FGYVDFLSAEDMDKALQLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRV 382 Query: 247 TEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQV 426 TED++++ F N +E ++++ + G S+G ++ F++E E+ + E + ++ G+ + Sbjct: 383 TEDEMKNVFE---NALEVRLVL-NKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAM 438 Query: 427 ------EIKKAEPKKHGGDHSS 474 E + E +K GG+ S Sbjct: 439 VIDYTGEKSQQESQKGGGERES 460
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 62.0 bits (149), Expect = 8e-10 Identities = 35/102 (34%), Positives = 51/102 (50%) Frame = +1 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 M+S +G K+FVGGL E L FS YG + E ++ D T RSRGFGFVTFE+ Sbjct: 1 MASDEG----KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN 56 Query: 364 EDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGRSS 489 D + + + + G+Q+ + +A G S+ Sbjct: 57 IDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98 Score = 45.4 bits (106), Expect = 8e-05 Identities = 25/76 (32%), Positives = 44/76 (57%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F KYG I++ V++KD+ T+ RGFGFVTF + ID + ++G++V+ ++ R + Sbjct: 26 FSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDAMMAMNGKSVDGRQI--RVD 80 Query: 184 MSSKDGPKTRKIFVGG 231 + K + + GG Sbjct: 81 QAGKSSDNRSRGYRGG 96
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 62.0 bits (149), Expect = 8e-10 Identities = 35/102 (34%), Positives = 51/102 (50%) Frame = +1 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 M+S +G K+FVGGL E L FS YG + E ++ D T RSRGFGFVTFE+ Sbjct: 1 MASDEG----KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN 56 Query: 364 EDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGRSS 489 D + + + + G+Q+ + +A G S+ Sbjct: 57 IDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98 Score = 45.4 bits (106), Expect = 8e-05 Identities = 25/76 (32%), Positives = 44/76 (57%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F KYG I++ V++KD+ T+ RGFGFVTF + ID + ++G++V+ ++ R + Sbjct: 26 FSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDAMMAMNGKSVDGRQI--RVD 80 Query: 184 MSSKDGPKTRKIFVGG 231 + K + + GG Sbjct: 81 QAGKSSDNRSRGYRGG 96
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 62.0 bits (149), Expect = 8e-10 Identities = 35/102 (34%), Positives = 51/102 (50%) Frame = +1 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 M+S +G K+FVGGL E L FS YG + E ++ D T RSRGFGFVTFE+ Sbjct: 1 MASDEG----KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN 56 Query: 364 EDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGRSS 489 D + + + + G+Q+ + +A G S+ Sbjct: 57 IDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98 Score = 45.4 bits (106), Expect = 8e-05 Identities = 25/76 (32%), Positives = 44/76 (57%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F KYG I++ V++KD+ T+ RGFGFVTF + ID + ++G++V+ ++ R + Sbjct: 26 FSKYGQISEVVVVKDRETQRSRGFGFVTFEN---IDDAKDAMMAMNGKSVDGRQI--RVD 80 Query: 184 MSSKDGPKTRKIFVGG 231 + K + + GG Sbjct: 81 QAGKSSDNRSRGYRGG 96
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 61.6 bits (148), Expect = 1e-09 Identities = 31/83 (37%), Positives = 52/83 (62%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 +IFVGG+ E+DLR FS YG+V E +I+ D + G S+G+GF+TFE+++ ++++ E Sbjct: 34 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFITFETQEDAQKILQE 92 Query: 394 GRMRDLGGKQVEIKKAEPKKHGG 462 + K++ I A K+ G Sbjct: 93 AEKLNYKDKKLNIGPAIRKQQVG 115 Score = 31.2 bits (69), Expect = 1.6 Identities = 12/46 (26%), Positives = 27/46 (58%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNID 141 F +YG++ + I+ D+ + +G+GF+TF K+L++ ++ Sbjct: 53 FSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQEAEKLN 97
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 61.6 bits (148), Expect = 1e-09 Identities = 32/83 (38%), Positives = 51/83 (61%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 +IFVGG+ E DLR FS YG+V E +I+ D + G S+G+GFVTFE+++ ++++ E Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFVTFETQEDAQKILQE 92 Query: 394 GRMRDLGGKQVEIKKAEPKKHGG 462 + K++ I A K+ G Sbjct: 93 AEKLNYKDKKLNIGPAIRKQQVG 115 Score = 31.6 bits (70), Expect = 1.2 Identities = 13/46 (28%), Positives = 27/46 (58%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNID 141 F +YG++ + I+ D+ + +G+GFVTF K+L++ ++ Sbjct: 53 FSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQEAEKLN 97
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 61.6 bits (148), Expect = 1e-09 Identities = 32/83 (38%), Positives = 51/83 (61%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 +IFVGG+ E DLR FS YG+V E +I+ D + G S+G+GFVTFE+++ ++++ E Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFVTFETQEDAQKILQE 92 Query: 394 GRMRDLGGKQVEIKKAEPKKHGG 462 + K++ I A K+ G Sbjct: 93 AEKLNYKDKKLNIGPAIRKQQVG 115 Score = 31.6 bits (70), Expect = 1.2 Identities = 13/46 (28%), Positives = 27/46 (58%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNID 141 F +YG++ + I+ D+ + +G+GFVTF K+L++ ++ Sbjct: 53 FSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQEAEKLN 97
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 61.2 bits (147), Expect = 1e-09 Identities = 29/83 (34%), Positives = 49/83 (59%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 +++VG L + + L + F+ G VVE +++ D +GRS+GFGFVT S V++ I+ Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317 Query: 394 GRMRDLGGKQVEIKKAEPKKHGG 462 DL G+Q+ + +AE + G Sbjct: 318 LNGADLDGRQIRVSEAEARPPRG 340 Score = 52.0 bits (123), Expect = 9e-07 Identities = 30/92 (32%), Positives = 42/92 (45%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 K+FVG L + L F S GNV +++ D TGRSRGFGFVT + VE + Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 394 GRMRDLGGKQVEIKKAEPKKHGGDHSSNGRSS 489 + G+ + + P + S G S Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFSRGPRS 191 Score = 35.0 bits (79), Expect = 0.11 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEH--NIDGRTVEVKRTVPR 177 F + G + ++ ++ D+ + +GFGFVT S + K + + ++DGR + V R Sbjct: 277 FNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336 Score = 32.3 bits (72), Expect = 0.71 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKR--TV 171 F G + ++ DK T RGFGFVT S + ++ + + + +GR + V Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 178 Query: 172 PREEMSSKDGPKT 210 P+ E S GP++ Sbjct: 179 PKREESFSRGPRS 191
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 61.2 bits (147), Expect = 1e-09 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 21/170 (12%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEV-------- 159 F + G + ++ +K +K RGFG+VTFS + + L++ +G ++V Sbjct: 23 FSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKIDVTVAKKKLR 82 Query: 160 ---KRTVPREEMSS-KDGPKTRK---------IFVGGLPSTLTEDDLRDHFSSYGNVVEH 300 K T E S K PK +K + + L +EDDL+ F+ YG V+E Sbjct: 83 NKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEV 142 Query: 301 QIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 I G+ RGF FV F++ + + M+++ G+ V + A K Sbjct: 143 NI-PKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAK 191 Score = 45.4 bits (106), Expect = 8e-05 Identities = 24/78 (30%), Positives = 42/78 (53%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +FVG LP + D L + FS G V + ++ + + RGFG+VTF + V+R + E Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE- 63 Query: 397 RMRDLGGKQVEIKKAEPK 450 + G ++++ A+ K Sbjct: 64 -ITTFEGCKIDVTVAKKK 80 Score = 29.6 bits (65), Expect = 4.6 Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 7/114 (6%) Frame = +1 Query: 121 EDEHNIDGRTVEVK-RTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVE 297 ED+ + D E K R +P + K +F+ L E+ L + +G++ Sbjct: 299 EDQEDEDVPVSEKKKRKLPSDVTEGKT------VFIRNLSFDSEEEALGEVLQQFGDLKY 352 Query: 298 HQIMVDHSTGRSRGFGFVTFESEDSVERVI------SEGRMRDLGGKQVEIKKA 441 ++++ T S+G F F ++++ ++ + +EG L G+Q+++ A Sbjct: 353 VRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASPEAEGGGLKLDGRQLKVDLA 406
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 61.2 bits (147), Expect = 1e-09 Identities = 30/76 (39%), Positives = 44/76 (57%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 K+F+GGL + E L F YG +VE +M D T +SRGF FVTFES + V + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 394 GRMRDLGGKQVEIKKA 441 + L GK +++++A Sbjct: 69 MNGKSLDGKAIKVEQA 84 Score = 53.9 bits (128), Expect = 2e-07 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEH--NIDGRTVEVKRTVPR 177 FGKYG I + ++MKD+ T RGF FVTF P+ V D + ++DG+ ++V++ Sbjct: 28 FGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQATKP 87 Query: 178 EEMSSKDGP 204 S + GP Sbjct: 88 SFESGRRGP 96
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 60.8 bits (146), Expect = 2e-09 Identities = 35/125 (28%), Positives = 60/125 (48%) Frame = +1 Query: 13 YGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREEMSS 192 YG I + + DK T +G+GFV F P+ K + +K + + +M+ Sbjct: 85 YGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVS----------ALKASGVQAQMAK 134 Query: 193 KDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDS 372 + +++ LP ++ E +L + +G V+ +I+ D S+G SRG GF ES + Sbjct: 135 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEK 193 Query: 373 VERVI 387 E VI Sbjct: 194 CEAVI 198 Score = 45.8 bits (107), Expect = 6e-05 Identities = 19/77 (24%), Positives = 43/77 (55%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +++ GLP T+ DL YG +V + ++D +T + +G+GFV F+S + ++ +S Sbjct: 64 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 123 Query: 397 RMRDLGGKQVEIKKAEP 447 + + + + ++ +P Sbjct: 124 KASGVQAQMAKQQEQDP 140
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 60.5 bits (145), Expect = 2e-09 Identities = 37/129 (28%), Positives = 57/129 (44%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F G I IM+D T G+GFV F + L +N++G TV KR Sbjct: 98 FRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEA---DALRAINNLNGITVRNKRIKVSFA 154 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 + + ++V L ++T++ L F YG +V+ I+ D TG RG F+ F Sbjct: 155 RPGGEQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNK 214 Query: 364 EDSVERVIS 390 + + IS Sbjct: 215 REEAQEAIS 223 Score = 42.4 bits (98), Expect = 7e-04 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNI--DGRTVEVKRTVPR 177 FGKYG I I++DKHT PRG F+ F+ + + +N+ +G T + V Sbjct: 184 FGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALNNVIPEGGTQPLTVRVAE 243 Query: 178 EEMSSK 195 E SK Sbjct: 244 EHGKSK 249
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 60.1 bits (144), Expect = 3e-09 Identities = 34/126 (26%), Positives = 60/126 (47%) Frame = +1 Query: 13 YGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREEMSS 192 YG I + + DK T +G+GFV F PS K + +K + + +M+ Sbjct: 79 YGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV----------TALKASGVQAQMAK 128 Query: 193 KDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDS 372 + +++ LP ++ E +L +G V+ +I+ D ++G SRG GF ES + Sbjct: 129 QQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGTSRGVGFARMESTEK 187 Query: 373 VERVIS 390 E +I+ Sbjct: 188 CEAIIT 193 Score = 42.4 bits (98), Expect = 7e-04 Identities = 17/77 (22%), Positives = 42/77 (54%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +++ GL T+ DL YG +V + ++D +T + +G+GFV F+S + ++ ++ Sbjct: 58 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 117 Query: 397 RMRDLGGKQVEIKKAEP 447 + + + + ++ +P Sbjct: 118 KASGVQAQMAKQQEQDP 134
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 60.1 bits (144), Expect = 3e-09 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 18/167 (10%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPR 177 F K+G I + + KD K+ +GFGFV + K +E ++ ++G + V R + Sbjct: 238 FAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKK 296 Query: 178 ----------------EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIM 309 E+M+ G +FV L ++ ++ L + F+ YG + ++M Sbjct: 297 NERMHVLKKQYEAYRLEKMAKYQGVN---LFVKNLDDSVDDEKLEEEFAPYGTITSAKVM 353 Query: 310 VDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 + G+S+GFGFV F + + + I+E + + GK + + A+ K Sbjct: 354 RTEN-GKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 399 Score = 57.8 bits (138), Expect = 2e-08 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 7/150 (4%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F G+++ + +D TK G+ +V F+D K +E + I GR + Sbjct: 57 FSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRI------ 110 Query: 178 EEMSSKDGPKTRK-----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGF 342 M S+ P RK IF+ L + L D FS +G+++ +I D + G+S+GF Sbjct: 111 --MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGF 167 Query: 343 GFVTFESEDSVERVISEGRMRDLGGKQVEI 432 GFV FE E + + I L G+++ + Sbjct: 168 GFVHFEEEGAAKEAIDALNGMLLNGQEIYV 197
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 60.1 bits (144), Expect = 3e-09 Identities = 33/80 (41%), Positives = 50/80 (62%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 +IFVGG+ TE DL FS+YG V +I+VD + G S+G+GFVTFE+E +R+ ++ Sbjct: 34 RIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRA-GVSKGYGFVTFETEQEAQRLQAD 92 Query: 394 GRMRDLGGKQVEIKKAEPKK 453 G L +++ I A K+ Sbjct: 93 GECVVLRDRKLNIAPAIKKQ 112
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 60.1 bits (144), Expect = 3e-09 Identities = 34/125 (27%), Positives = 59/125 (47%) Frame = +1 Query: 13 YGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREEMSS 192 YG I + + DK T +G+GFV F P+ K + +K + +M+ Sbjct: 85 YGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVS----------ALKANGVQAQMAK 134 Query: 193 KDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDS 372 + +++ LP ++ E +L + +G V+ +++ D S+G SRG GF ES + Sbjct: 135 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRD-SSGASRGVGFARMESTEK 193 Query: 373 VERVI 387 E VI Sbjct: 194 CEAVI 198 Score = 47.0 bits (110), Expect = 3e-05 Identities = 19/77 (24%), Positives = 43/77 (55%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +++ GLP T+ DL YG +V + ++D +T + +G+GFV F+S + ++ +S Sbjct: 64 LYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSAL 123 Query: 397 RMRDLGGKQVEIKKAEP 447 + + + + ++ +P Sbjct: 124 KANGVQAQMAKQQEQDP 140
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 59.7 bits (143), Expect = 4e-09 Identities = 30/69 (43%), Positives = 41/69 (59%) Frame = +1 Query: 187 SSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESE 366 S KD T KIFVGGLP T+ LR +F +G++ E ++ D TG+SRG+GFVT Sbjct: 4 SQKDTTFT-KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 62 Query: 367 DSVERVISE 393 + ER + Sbjct: 63 AAAERACKD 71 Score = 40.4 bits (93), Expect = 0.003 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN-IDGRTVEV 159 +F +G I ++V++ D+ T RG+GFVT +D + ++ +D + IDGR V Sbjct: 30 YFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 83
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 59.7 bits (143), Expect = 4e-09 Identities = 29/76 (38%), Positives = 43/76 (56%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 K+F+GGL + E L F YG +VE +M D T +SRGF FVTFES + + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 394 GRMRDLGGKQVEIKKA 441 + L GK +++++A Sbjct: 69 MNGKSLDGKAIKVEQA 84 Score = 52.4 bits (124), Expect = 7e-07 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEH--NIDGRTVEVKRTVPR 177 FGKYG I + ++MKD+ T RGF FVTF P+ D + ++DG+ ++V++ Sbjct: 28 FGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP 87 Query: 178 EEMSSKDGP 204 S + GP Sbjct: 88 SFESGRRGP 96
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 59.3 bits (142), Expect = 5e-09 Identities = 34/126 (26%), Positives = 60/126 (47%) Frame = +1 Query: 13 YGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREEMSS 192 YG I + + DK T +G+GFV F PS K + +K + + +M+ Sbjct: 81 YGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAV----------TALKASGVQAQMAK 130 Query: 193 KDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDS 372 + +++ LP ++ E +L +G V+ +I+ D ++G SRG GF ES + Sbjct: 131 QQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGASRGVGFARMESTEK 189 Query: 373 VERVIS 390 E +I+ Sbjct: 190 CEAIIT 195 Score = 43.5 bits (101), Expect = 3e-04 Identities = 18/77 (23%), Positives = 42/77 (54%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +++ GL T+ DL YG +V + ++D +T + +G+GFV F+S S ++ ++ Sbjct: 60 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTAL 119 Query: 397 RMRDLGGKQVEIKKAEP 447 + + + + ++ +P Sbjct: 120 KASGVQAQMAKQQEQDP 136
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 59.3 bits (142), Expect = 5e-09 Identities = 26/90 (28%), Positives = 50/90 (55%) Frame = +1 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 R +FVG +P TE+ L+D FS G+VV +++ D TG+ +G+GF ++ +++ + Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 391 EGRMRDLGGKQVEIKKAEPKKHGGDHSSNG 480 R+ G+ + + A +K+ + S G Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLG 105 Score = 29.6 bits (65), Expect = 4.6 Identities = 13/48 (27%), Positives = 25/48 (52%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGR 147 F + G++ ++ D+ T P+G+GF + D + L N++GR Sbjct: 36 FSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ---ETALSAMRNLNGR 80
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 59.3 bits (142), Expect = 5e-09 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 I+VG L ++E DL F+ YG+V Q+ D TGR RGFGFV E++ I Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 397 RMRDLGGKQVEIKKAEPKKH--GGDHSSNGRSSH 492 + G+ +++ KA+P+++ GG GR S+ Sbjct: 63 DGAEWMGRDLKVNKAKPRENRSGGGSFGGGRKSY 96 Score = 32.7 bits (73), Expect = 0.54 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPR 177 F +YG++ + D+ T RGFGFV + +E D GR ++V + PR Sbjct: 21 FAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEALDGAEWMGRDLKVNKAKPR 80 Query: 178 EEMS 189 E S Sbjct: 81 ENRS 84
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 59.3 bits (142), Expect = 5e-09 Identities = 31/74 (41%), Positives = 47/74 (63%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 +IFVGG P++ TE +LR+HF + V + + MV G+S+G+GF+TFE+ED E + Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDVK-MVKSLDGQSKGYGFITFETEDQAEEI--- 123 Query: 394 GRMRDLGGKQVEIK 435 R L KQ+E + Sbjct: 124 ---RKLTPKQLEFR 134
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 59.3 bits (142), Expect = 5e-09 Identities = 26/90 (28%), Positives = 50/90 (55%) Frame = +1 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 R +FVG +P TE+ L+D FS G+VV +++ D TG+ +G+GF ++ +++ + Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 391 EGRMRDLGGKQVEIKKAEPKKHGGDHSSNG 480 R+ G+ + + A +K+ + S G Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLG 105 Score = 29.6 bits (65), Expect = 4.6 Identities = 13/48 (27%), Positives = 25/48 (52%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGR 147 F + G++ ++ D+ T P+G+GF + D + L N++GR Sbjct: 36 FSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ---ETALSAMRNLNGR 80
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 59.3 bits (142), Expect = 5e-09 Identities = 34/92 (36%), Positives = 50/92 (54%) Frame = +1 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 EE S K +T ++F+ + T TEDD R FS YG + E I VD TG+S+GF +V F Sbjct: 319 EEKSLKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLF 378 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 ++ D+ E + G+ + I A+ KK Sbjct: 379 KNADNAATAFVELDKQIFQGRLLHILPADAKK 410 Score = 34.3 bits (77), Expect = 0.19 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 15/125 (12%) Frame = +1 Query: 106 IDKVLEDEHNIDGRTVEVKRTVPREEMSSKD----------GPKTRKIFVGGLPSTLTED 255 I K E I G + +++P + D GP T IF+ L + T Sbjct: 607 IQKATAKEAKISGADLLEAQSLPAADKDDHDDDDDDDDVQAGP-TVSIFIKNLNFSTTSQ 665 Query: 256 DLRDHFSSYGNVVEHQIMVDHSTGR-----SRGFGFVTFESEDSVERVISEGRMRDLGGK 420 L + F + V Q+ + S GFGF F++++ VIS L G Sbjct: 666 QLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQANAVISAMEGTILDGH 725 Query: 421 QVEIK 435 ++++K Sbjct: 726 KLQLK 730
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 59.3 bits (142), Expect = 5e-09 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 23/180 (12%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F + G + ++ +K +K RGFG+VTFS + + L++ +G + V TV +++ Sbjct: 23 FSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINV--TVAKKK 80 Query: 184 MSS--------------KDGPKTRK---------IFVGGLPSTLTEDDLRDHFSSYGNVV 294 + + K PK +K + + L +EDDL+ F+ +G V+ Sbjct: 81 LRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVL 140 Query: 295 EHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSS 474 E I G+ RGFGFV F++ + + M+++ G+ V + A K D S Sbjct: 141 EVNI-PRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKDTQS 199 Score = 43.1 bits (100), Expect = 4e-04 Identities = 20/59 (33%), Positives = 33/59 (55%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 +FVG LP + + L + FS G V + ++ + + RGFG+VTF + V+R + E Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 63 Score = 32.0 bits (71), Expect = 0.92 Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 20/137 (14%) Frame = +1 Query: 91 SDPSVIDKVLEDEHNIDGRTVEVKRTVPREEMSSK----DGPKTRK----------IFVG 228 SD S D LE+ +ID + EE K K RK +F+ Sbjct: 280 SDHSEEDSDLEESDSIDDGEELAQSDTSTEEQEDKAVQVSNKKKRKLPSDVNEGKTVFIR 339 Query: 229 GLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVI------S 390 L E++L + +G + +I++ T S+G F F ++++ ++ + + Sbjct: 340 NLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPEN 399 Query: 391 EGRMRDLGGKQVEIKKA 441 E L G+Q+++ A Sbjct: 400 EAGGLKLDGRQLKVDLA 416
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 58.9 bits (141), Expect = 7e-09 Identities = 27/76 (35%), Positives = 45/76 (59%) Frame = +1 Query: 253 DDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEI 432 + L FS+YG V+E +I++D T RSRGFGFVTF +E+++ I ++L G+ + + Sbjct: 1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITV 60 Query: 433 KKAEPKKHGGDHSSNG 480 +A+ + G G Sbjct: 61 NEAQSRGGRGGGGGGG 76 Score = 43.9 bits (102), Expect = 2e-04 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPR 177 F YG + +S I+ D+ T+ RGFGFVTFS + +E + +DGR + V R Sbjct: 7 FSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 58.5 bits (140), Expect = 9e-09 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 15/165 (9%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNID--------GRTVEV 159 F ++G I I KD++ ++ RG+ FV F +P + E + GR + Sbjct: 221 FAEFGKIVSLAIAKDEN-RLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKK 279 Query: 160 --KRTVPREEMSSKDGP-----KTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 + + RE+ K K I+V + +TE++LR HFS G + ++M D Sbjct: 280 AEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE 339 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 G+S+GFGFV F + + + + GK + + A+ K+ Sbjct: 340 K-GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKE 383 Score = 58.2 bits (139), Expect = 1e-08 Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 2/147 (1%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F ++ ++T + KD + +G+ F + +E ++N ++G+ + V +V R Sbjct: 44 FAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSV-R 102 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 + ++G +FV LP ++T L+D F +GN+V ++ G+SRG+GFV F Sbjct: 103 APDARRNG--VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQF 159 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKK 438 E ED+ I + K++ + K Sbjct: 160 EQEDAAHAAIQTLNSTIVADKEIYVGK 186 Score = 43.9 bits (102), Expect = 2e-04 Identities = 23/82 (28%), Positives = 39/82 (47%) Frame = +1 Query: 187 SSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESE 366 S P T ++VG L ++TE L D F+ + ++ ++ D S+GRS +G+ F S Sbjct: 16 SGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSR 75 Query: 367 DSVERVISEGRMRDLGGKQVEI 432 I + L GK + + Sbjct: 76 QDANLAIEKKNNSLLNGKMIRV 97
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 58.2 bits (139), Expect = 1e-08 Identities = 26/90 (28%), Positives = 49/90 (54%) Frame = +1 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 R +FVG +P TE+ L+D FS G VV +++ D TG+ +G+GF ++ +++ + Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 391 EGRMRDLGGKQVEIKKAEPKKHGGDHSSNG 480 R+ G+ + + A +K+ + S G Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLG 105 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGR 147 F + G + ++ D+ T P+G+GF + D + L N++GR Sbjct: 36 FSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ---ETALSAMRNLNGR 80
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 58.2 bits (139), Expect = 1e-08 Identities = 29/69 (42%), Positives = 41/69 (59%) Frame = +1 Query: 187 SSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESE 366 S KD T KIFVGGLP T+ LR +F +G++ E ++ D TG+SRG+GFVT Sbjct: 25 SRKDTTFT-KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 83 Query: 367 DSVERVISE 393 + +R + Sbjct: 84 AAADRACKD 92 Score = 42.0 bits (97), Expect = 9e-04 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN-IDGRTVEV 159 +F +G I ++V++ D+ T RG+GFVT +D + D+ +D + IDGR V Sbjct: 51 YFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKANV 104
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 58.2 bits (139), Expect = 1e-08 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 11/150 (7%) Frame = +1 Query: 67 RGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPREEMSSKDGPK---------TR 213 +GF F+ FS ++ +N I+GR++ R E S GP+ ++ Sbjct: 450 KGFAFIEFSSAEDAKDAMDSCNNTEIEGRSI-------RLEFSQGGGPQGGGRGGSAQSK 502 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 +FV GL TE+ L++ F N +I+ D TG S+GFGFV F + + + Sbjct: 503 TLFVRGLSEDTTEETLKEAFDGSVNA---RIVTDRDTGASKGFGFVDFSTAEDAKAAKEA 559 Query: 394 GRMRDLGGKQVEIKKAEPKKHGGDHSSNGR 483 ++ G +V + A+PK GD GR Sbjct: 560 MEDGEIDGNKVTLDFAKPK---GDSQRGGR 586 Score = 53.9 bits (128), Expect = 2e-07 Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 5/144 (3%) Frame = +1 Query: 67 RGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPREEMS-SKDGPK--TRKIFVGG 231 +G +V FS+ +K LE++ I+GR++ V T + + S +K GP+ ++ + V Sbjct: 361 KGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKVLVVNN 420 Query: 232 LPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDL 411 L + TED LR+ F + I + + GR++GF F+ F S + + + ++ Sbjct: 421 LSYSATEDSLREVFEKATS-----IRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEI 475 Query: 412 GGKQVEIKKAEPKKHGGDHSSNGR 483 G+ + ++ ++ GG GR Sbjct: 476 EGRSIRLEFSQ----GGGPQGGGR 495 Score = 47.8 bits (112), Expect = 2e-05 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 4/111 (3%) Frame = +1 Query: 121 EDEHNIDGRTVEVKRTVPREEMSSKD-GPKTRKIFVGGLPSTLTEDDLRD---HFSSYGN 288 E++ R E+ +T+P + + D + IF+G L ST D+L+D F S N Sbjct: 201 EEQQGSAKRKKEMPKTIPEAKKTKTDTASEGLSIFIGNLNSTKEFDELKDALREFFSKKN 260 Query: 289 VVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKA 441 + I + G S+ FG+V F SE+ VE+ + + L G +V+I+KA Sbjct: 261 LTIQDIRI----GNSKKFGYVDFSSEEEVEKALKLTGKKIL-GTEVKIEKA 306
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 58.2 bits (139), Expect = 1e-08 Identities = 26/90 (28%), Positives = 49/90 (54%) Frame = +1 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 R +FVG +P TE+ L+D FS G VV +++ D TG+ +G+GF ++ +++ + Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 391 EGRMRDLGGKQVEIKKAEPKKHGGDHSSNG 480 R+ G+ + + A +K+ + S G Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLG 105 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGR 147 F + G + ++ D+ T P+G+GF + D + L N++GR Sbjct: 36 FSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ---ETALSAMRNLNGR 80
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 58.2 bits (139), Expect = 1e-08 Identities = 26/90 (28%), Positives = 49/90 (54%) Frame = +1 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 R +FVG +P TE+ L+D FS G VV +++ D TG+ +G+GF ++ +++ + Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 391 EGRMRDLGGKQVEIKKAEPKKHGGDHSSNG 480 R+ G+ + + A +K+ + S G Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLG 105 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGR 147 F + G + ++ D+ T P+G+GF + D + L N++GR Sbjct: 36 FSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ---ETALSAMRNLNGR 80
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 58.2 bits (139), Expect = 1e-08 Identities = 26/90 (28%), Positives = 49/90 (54%) Frame = +1 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 R +FVG +P TE+ L+D FS G VV +++ D TG+ +G+GF ++ +++ + Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 391 EGRMRDLGGKQVEIKKAEPKKHGGDHSSNG 480 R+ G+ + + A +K+ + S G Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLG 105 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGR 147 F + G + ++ D+ T P+G+GF + D + L N++GR Sbjct: 36 FSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ---ETALSAMRNLNGR 80
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 57.4 bits (137), Expect = 2e-08 Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 2/137 (1%) Frame = +1 Query: 79 FVTFSDPSVIDKVLEDE--HNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTE 252 +V F + S + L+ DG + V E SS+D R +FVG LP + E Sbjct: 247 YVVFKEESAATQALKRNGAQIADGFRIRVDLA---SETSSRD---KRSVFVGNLPYKVEE 300 Query: 253 DDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEI 432 + HF G+++ +I+ D TG +GFG+V FE+ DSV + +L G+++ + Sbjct: 301 SAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNN-SELMGRKLRV 359 Query: 433 KKAEPKKHGGDHSSNGR 483 ++ K+ +SN R Sbjct: 360 MRSVNKEKFKQQNSNPR 376 Score = 36.6 bits (83), Expect = 0.037 Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE-DEHNIDGRTVEVKRTVPR 177 HF G+I I++DK T + +GFG+V F + + L+ + + GR + V R+V + Sbjct: 306 HFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVMRSVNK 365 Query: 178 EEMSSKD-GPKTRKI 219 E+ ++ P+ + + Sbjct: 366 EKFKQQNSNPRLKNV 380 Score = 29.3 bits (64), Expect = 6.0 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = +1 Query: 112 KVLED-EHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGN 288 K+L+D E + + +++ E + ++ R +FVG LP T + L+ F YG Sbjct: 156 KILDDTEDTVVSQRKKIQINQEEERLKNE-----RTVFVGNLPVTCNKKKLKSFFKEYGQ 210 Query: 289 V 291 + Sbjct: 211 I 211
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 57.4 bits (137), Expect = 2e-08 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 14/143 (9%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTK---MPRGFGFVTFSDPSVIDKVLED--EHNIDGRTVEVK-- 162 F K GAI I K K+ + GFGFV + P K L+ H +DG +EV+ Sbjct: 742 FSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 801 Query: 163 --RTVPR-EEMSSKDGPK---TRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHS- 321 T P K PK T KI V +P + ++R+ FS++G + ++ + Sbjct: 802 ERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTG 861 Query: 322 TGRSRGFGFVTFESEDSVERVIS 390 TG RGFGFV F ++ ++ + Sbjct: 862 TGAHRGFGFVDFITKQDAKKAFN 884 Score = 49.7 bits (117), Expect = 4e-06 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 20/161 (12%) Frame = +1 Query: 70 GFGFVTFSDPSVIDKVLEDEHN-IDGRTVEV-------------KRTVP------REEMS 189 G+ FV S + K L+ + + GR +EV K T P E Sbjct: 333 GYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREKQAPTARGPPKSTTPWQGRTLGENEE 392 Query: 190 SKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESED 369 +D + ++FV L T +E+DL FS+YG + E +D T + +GF FVTF + Sbjct: 393 EEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPE 452 Query: 370 SVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGRSSH 492 + +E + G+ + + + KK ++ SS+ Sbjct: 453 HAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQEANAPGSSY 493 Score = 32.7 bits (73), Expect = 0.54 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPR 177 F YG +++ D TK P+GF FVTF P K D GR + V + + Sbjct: 420 FSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 479 Query: 178 EEMSSK 195 +E S + Sbjct: 480 KEASQE 485
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 57.4 bits (137), Expect = 2e-08 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 2/88 (2%) Frame = +1 Query: 202 PKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVER 381 P + ++F+G LP + + +L+D F SYGNVVE +I +S G+ FGFV F+ + V++ Sbjct: 337 PDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRI---NSGGKLPNFGFVVFDDSEPVQK 393 Query: 382 VISEGRMRDLGGKQ--VEIKKAEPKKHG 459 V+S + G + VE KK + G Sbjct: 394 VLSNRPIMFRGEVRLNVEEKKTRAAREG 421
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 57.4 bits (137), Expect = 2e-08 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 19/147 (12%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEV-----K 162 F +G I+D+ ++KD T +G+GFV+F + + ++ + GR + K Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185 Query: 163 RTVPR------------EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQI 306 P+ +E+ S+ P ++ GG+ S LTE +R FS +G ++E ++ Sbjct: 186 PPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245 Query: 307 MVDHSTGRSRGFGFVTFESEDSVERVI 387 D +G+ FV F S +S I Sbjct: 246 FPD------KGYSFVRFSSHESAAHAI 266 Score = 55.1 bits (131), Expect = 1e-07 Identities = 25/78 (32%), Positives = 48/78 (61%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +FVG L +T +D++ F+ +G + + +++ D +TG+S+G+GFV+F ++ E I + Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 397 RMRDLGGKQVEIKKAEPK 450 + LGG+Q+ A K Sbjct: 168 GGQWLGGRQIRTNWATRK 185
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 57.0 bits (136), Expect = 3e-08 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 22/163 (13%) Frame = +1 Query: 70 GFGFVTFSDPSVIDKVLE-DEHNIDGRTVEV--KRTVPR------------------EEM 186 G+ FV FS+ + + L+ + + GR +EV ++ VP E Sbjct: 334 GYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENE 393 Query: 187 SSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESE 366 +D ++ ++FV LP T TE+DL FS YG + E +D T + +GF F+TF Sbjct: 394 EEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFP 453 Query: 367 DSVERVISEGRMRDLGGKQVEIKKAEPKKHGG-DHSSNGRSSH 492 + + SE + G+ + + + KK D S+ G SS+ Sbjct: 454 EHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSY 496 Score = 53.1 bits (126), Expect = 4e-07 Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 21/150 (14%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTK---MPRGFGFVTFSDPSVIDKVLED--EHNIDGRTVEV--- 159 F K G + I K K+ + GFGFV + P K L+ H +DG +EV Sbjct: 750 FSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRIS 809 Query: 160 ------------KRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQ 303 K+ VPR++ +SK I V +P ++R+ FS++G + + Sbjct: 810 ERATKPAVTLARKKQVPRKQTTSK-------ILVRNIPFQAHSREIRELFSTFGELKTVR 862 Query: 304 IMVDHS-TGRSRGFGFVTFESEDSVERVIS 390 + + TG RGFGFV F ++ +R + Sbjct: 863 LPKKMTGTGTHRGFGFVDFLTKQDAKRAFN 892 Score = 34.7 bits (78), Expect = 0.14 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPR 177 F KYG +++ D TK P+GF F+TF P K D GR + V + + Sbjct: 422 FSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIK 481 Query: 178 EEMS 189 +E S Sbjct: 482 KEAS 485
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 57.0 bits (136), Expect = 3e-08 Identities = 28/76 (36%), Positives = 42/76 (55%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 K+F+GGL + E L F YG +VE +M D T +SRGF FVT ES + + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 394 GRMRDLGGKQVEIKKA 441 + L GK +++++A Sbjct: 69 MNGKSLDGKAIKVEQA 84 Score = 49.7 bits (117), Expect = 4e-06 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEH--NIDGRTVEVKRTVPR 177 FGKYG I + ++MKD+ T RGF FVT P+ D + ++DG+ ++V++ Sbjct: 28 FGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQATKP 87 Query: 178 EEMSSKDGP 204 S + GP Sbjct: 88 FFESGRRGP 96
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 57.0 bits (136), Expect = 3e-08 Identities = 37/171 (21%), Positives = 75/171 (43%), Gaps = 12/171 (7%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F G + + ++ ++ T RG+G+V F + S +K +++ IDGR + + + Sbjct: 188 FEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSK 247 Query: 178 EEMSSKDGPK--------TRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRS 333 ++ K + +F+G L D + + F+ +G VV +I T + Sbjct: 248 PAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQP 307 Query: 334 RGFGFVTFESEDSVERVIS--EGRMRDLGGKQVEIKKAEPKKHGGDHSSNG 480 +GFG+V F + + ++ + +G D +++ P GG S G Sbjct: 308 KGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNNDGGRGGSRG 358 Score = 54.7 bits (130), Expect = 1e-07 Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 6/131 (4%) Frame = +1 Query: 91 SDPSVIDKVLEDEHNIDGRTVEVKRTVPREEMSSKDGPKTRK------IFVGGLPSTLTE 252 S S D E E + D + +E SS K + IFVG L ++ + Sbjct: 122 SSSSSSDSESEKEESNDKKRKSEDAEEEEDEESSNKKQKNEETEEPATIFVGRLSWSIDD 181 Query: 253 DDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEI 432 + L+ F G V+ +++ + T RSRG+G+V FE++ E+ I E + +++ G+ + Sbjct: 182 EWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINC 241 Query: 433 KKAEPKKHGGD 465 + K G + Sbjct: 242 DMSTSKPAGNN 252
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 56.6 bits (135), Expect = 4e-08 Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 1/104 (0%) Frame = +1 Query: 142 GRTVEVK-RTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 G+ V+V T P + KD +FVG L +T +D++ F+ +G + + +++ D Sbjct: 92 GKEVKVNWATTPSSQ--KKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDM 149 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 +TG+S+G+GFV+F ++ E I + LGG+Q+ A K Sbjct: 150 ATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193 Score = 53.1 bits (126), Expect = 4e-07 Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 19/147 (12%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEV-----K 162 F +G I+D+ ++KD T +G+GFV+F + + + + GR + K Sbjct: 134 FAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193 Query: 163 RTVPR------------EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQI 306 P+ E++ ++ PK ++ GG+ S LT+ +R FS +G ++E ++ Sbjct: 194 PPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV 253 Query: 307 MVDHSTGRSRGFGFVTFESEDSVERVI 387 + +G+ FV F + +S I Sbjct: 254 FPE------KGYSFVRFSTHESAAHAI 274
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 56.6 bits (135), Expect = 4e-08 Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 1/104 (0%) Frame = +1 Query: 142 GRTVEVK-RTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDH 318 G+ V+V T P + KD +FVG L +T +D++ F+ +G + + +++ D Sbjct: 75 GKEVKVNWATTPSSQ--KKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDM 132 Query: 319 STGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 +TG+S+G+GFV+F ++ E I + LGG+Q+ A K Sbjct: 133 ATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176 Score = 53.1 bits (126), Expect = 4e-07 Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 19/147 (12%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEV-----K 162 F +G I+D+ ++KD T +G+GFV+F + + + + GR + K Sbjct: 117 FAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176 Query: 163 RTVPR------------EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQI 306 P+ E++ ++ PK ++ GG+ S LT+ +R FS +G ++E ++ Sbjct: 177 PPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV 236 Query: 307 MVDHSTGRSRGFGFVTFESEDSVERVI 387 + +G+ FV F + +S I Sbjct: 237 FPE------KGYSFVRFSTHESAAHAI 257
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 56.2 bits (134), Expect = 5e-08 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 19/147 (12%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEV-----K 162 F +G I+D+ ++KD T +G+GFV+F + + ++ + GR + K Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185 Query: 163 RTVPR------------EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQI 306 P+ +E+ ++ P ++ GG+ S LTE +R FS +G ++E ++ Sbjct: 186 PPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245 Query: 307 MVDHSTGRSRGFGFVTFESEDSVERVI 387 D +G+ FV F S +S I Sbjct: 246 FPD------KGYSFVRFNSHESAAHAI 266 Score = 55.1 bits (131), Expect = 1e-07 Identities = 25/78 (32%), Positives = 48/78 (61%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +FVG L +T +D++ F+ +G + + +++ D +TG+S+G+GFV+F ++ E I + Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 397 RMRDLGGKQVEIKKAEPK 450 + LGG+Q+ A K Sbjct: 168 GGQWLGGRQIRTNWATRK 185
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 56.2 bits (134), Expect = 5e-08 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 4/94 (4%) Frame = +1 Query: 169 VPREEMSSK--DGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGF 342 VP +S + DG + +FV +P +T++ L D FS++ + +H ++V + RSRGF Sbjct: 10 VPSSNVSKQNDDGLDMKTLFVRSIPQDVTDEQLADFFSNFAPI-KHAVVVKDTNKRSRGF 68 Query: 343 GFVTFESEDSVERVISEGRMRDLGGK--QVEIKK 438 GFV+F ED + +++ R G +V+I K Sbjct: 69 GFVSFAVEDDTKEALAKARKTKFNGHILRVDIAK 102 Score = 48.1 bits (113), Expect = 1e-05 Identities = 46/175 (26%), Positives = 70/175 (40%), Gaps = 54/175 (30%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 FG+YG + ++ I + + K+ GF FVT S LE+ + IDGR V V V + Sbjct: 168 FGRYGTVVEATIPRKRDGKLC-GFAFVTMKKISNCRIALENTKDLKIDGRKVAVDFAVQK 226 Query: 178 E----------EMSSKDGPKT---------------------------------RK---- 216 EM+ KD ++ RK Sbjct: 227 NRWEDYKKAQPEMNDKDDNESGNEDAEENHDDEEDENEEEDRQVDQASKNKESKRKAQNK 286 Query: 217 -----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESE 366 +FV +P TE+ L HFS +G+V ++D STG ++G FV F+ + Sbjct: 287 REDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQ 341 Score = 39.7 bits (91), Expect = 0.004 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 21/126 (16%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLED-----------------E 129 HF K+G++ ++ + DK T + +G FV F D ++ +++ E Sbjct: 309 HFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQYTYNECIKNAPAAGSTSLLIGDDVMPE 368 Query: 130 HNIDGRTVEVKRTVPREE---MSSKDGPKTRKIFVGGLPSTLTEDDLRD-HFSSYGNVVE 297 + +GR + + T+ RE+ M+ K+ K RK +G P E D R+ + + G VVE Sbjct: 369 YVYEGRVLSITPTLVREDAGRMAEKNAAK-RKEALGKAPG---EKDRRNLYLLNEGRVVE 424 Query: 298 HQIMVD 315 M D Sbjct: 425 GSKMAD 430 Score = 37.4 bits (85), Expect = 0.022 Identities = 46/208 (22%), Positives = 78/208 (37%), Gaps = 49/208 (23%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFS------------------------------ 93 F + I +V++KD + K RGFGFV+F+ Sbjct: 46 FSNFAPIKHAVVVKDTN-KRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRR 104 Query: 94 -----DPSVIDKVL-EDEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTED 255 V++K E I G+ E + E+ K PK + + +P + + Sbjct: 105 DRSKKTSEVVEKSTPESSEKITGQNNEDEDDADGEDSMLKGKPK---LIIRNMPWSCRDP 161 Query: 256 -DLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEI 432 L+ F YG VVE I G+ GF FVT + + + + + G++V + Sbjct: 162 VKLKKIFGRYGTVVEATIPRKRD-GKLCGFAFVTMKKISNCRIALENTKDLKIDGRKVAV 220 Query: 433 ------------KKAEPKKHGGDHSSNG 480 KKA+P+ + D + +G Sbjct: 221 DFAVQKNRWEDYKKAQPEMNDKDDNESG 248
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 55.5 bits (132), Expect = 8e-08 Identities = 24/62 (38%), Positives = 40/62 (64%) Frame = +1 Query: 202 PKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVER 381 P + ++FVG LP + E++L++ F S+GNVVE +I G+ FGFV F+ + V+R Sbjct: 328 PDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQR 387 Query: 382 VI 387 ++ Sbjct: 388 IL 389
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 55.5 bits (132), Expect = 8e-08 Identities = 24/62 (38%), Positives = 40/62 (64%) Frame = +1 Query: 202 PKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVER 381 P + ++FVG LP + E++L++ F S+GNVVE +I G+ FGFV F+ + V+R Sbjct: 328 PDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQR 387 Query: 382 VI 387 ++ Sbjct: 388 IL 389
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 55.5 bits (132), Expect = 8e-08 Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNID--GRTVEVKRTVPR 177 F + G + ++ + KD+ T +G+GFV F D ++ + I G+ + V + Sbjct: 33 FLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKA--- 89 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVE-HQIMVDHSTGRSRGFGFVT 354 +K+ IF+G L + E L D FS++G +++ +IM D TG S+G+ F+ Sbjct: 90 -SAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFIN 148 Query: 355 FESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGD 465 F S D+ + I + L + + + A K G+ Sbjct: 149 FASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185 Score = 49.7 bits (117), Expect = 4e-06 Identities = 29/87 (33%), Positives = 43/87 (49%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 ++VGGL ++E L + F G VV + D TG+ +G+GFV F SE+ + I Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74 Query: 397 RMRDLGGKQVEIKKAEPKKHGGDHSSN 477 M L GK + + KA D +N Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGAN 101
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 55.5 bits (132), Expect = 8e-08 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 2/88 (2%) Frame = +1 Query: 202 PKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVER 381 P + ++F+G LP + + +L+D F ++GNVVE +I +S G+ FGFV F+ + V++ Sbjct: 335 PDSHQLFIGNLPHEVDKSELKDFFQNFGNVVELRI---NSGGKLPNFGFVVFDDSEPVQK 391 Query: 382 VISEGRMRDLGGKQ--VEIKKAEPKKHG 459 V+S + G + VE KK + G Sbjct: 392 VLSNRPIMFRGAVRLNVEEKKTRAAREG 419
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 55.5 bits (132), Expect = 8e-08 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 13/107 (12%) Frame = +1 Query: 106 IDKVLEDEHNIDGRTVEV-------KRTVPREEMSS------KDGPKTRKIFVGGLPSTL 246 I K +E ++++ T V KR P + S D T K+FVG +P T Sbjct: 72 IGKAMESDYSVRPTTPPVQQPLSGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTA 131 Query: 247 TEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVI 387 TE+++R +F +GNV+E ++ D TG+ +G FV + + +R I Sbjct: 132 TEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAI 178 Score = 54.3 bits (129), Expect = 2e-07 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 6/157 (3%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN---IDGRTVEVKRTV 171 +F ++G + + ++KDK T +G FV ++ D+ + HN + G T V+ Sbjct: 139 YFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRY 198 Query: 172 PREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFV 351 E + G K+FVG L TE ++ + F +G+V + +M D +SRG GFV Sbjct: 199 ADGERE-RIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFV 256 Query: 352 TFESEDSVERVIS--EGRMRDLGGKQ-VEIKKAEPKK 453 + S+++ I G G Q + ++ AEPK+ Sbjct: 257 KYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)| Length = 225 Score = 55.5 bits (132), Expect = 8e-08 Identities = 31/97 (31%), Positives = 53/97 (54%) Frame = +1 Query: 79 FVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDD 258 F S +DKV+ ++ + ++ KR + M +K+ K KIFVGGL E+ Sbjct: 133 FALLFKESNVDKVMIKKNINSWKVIDPKRA---KAMKTKEPVK--KIFVGGLSPDTPEEK 187 Query: 259 LRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESED 369 +R++F +G V ++ +D+ T + RGF F+TF E+ Sbjct: 188 IREYFGGFGEVESIELPMDNKTNKRRGFCFITFNQEE 224
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 55.1 bits (131), Expect = 1e-07 Identities = 28/99 (28%), Positives = 52/99 (52%) Frame = +1 Query: 163 RTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGF 342 + + ++E R ++V GL ST DL++ FS YG VV +++ + + +R + Sbjct: 391 KPIIKDEKGRVGSGSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCY 450 Query: 343 GFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHG 459 GFVT + D + IS +L G+ + ++KA+ + G Sbjct: 451 GFVTMSTSDEATKCISHLHRTELHGRMISVEKAKNEPAG 489 Score = 29.6 bits (65), Expect = 4.6 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEH--NIDGRTVEVKR 165 F KYG + + ++ + + R +GFVT S K + H + GR + V++ Sbjct: 427 FSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEK 482
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 55.1 bits (131), Expect = 1e-07 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 4/118 (3%) Frame = +1 Query: 154 EVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRS 333 + KR E+ S G R +V GL ST DL++ FS YG VV +++ + + + Sbjct: 390 DTKRLSKEEKGRSSCG---RNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGA 446 Query: 334 RGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKA--EP--KKHGGDHSSNGRSSHS 495 R +GFVT + + + I+ +L GK + ++KA EP KK S+G+ S Sbjct: 447 RCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKS 504
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 55.1 bits (131), Expect = 1e-07 Identities = 33/154 (21%), Positives = 76/154 (49%), Gaps = 8/154 (5%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKR--TV 171 F +G I + D T+ +GF FV + P LE + + GR ++V R + Sbjct: 150 FTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNM 209 Query: 172 PREEMS----SKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRG 339 P+ + ++ +I+V + L+E+D++ F ++G ++ ++ S +G Sbjct: 210 PQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKG 269 Query: 340 FGFVTFESEDSVERVISEGRMRDLGGKQVEIKKA 441 +GF+ + ++ +++ I+ + DLGG+ + + ++ Sbjct: 270 YGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRS 303 Score = 39.7 bits (91), Expect = 0.004 Identities = 17/73 (23%), Positives = 38/73 (52%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 +++VG + L ED +R F+ +G + + D T + +GF FV +E + + + + Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190 Query: 394 GRMRDLGGKQVEI 432 +GG+ +++ Sbjct: 191 MNGALMGGRNIKV 203
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 54.7 bits (130), Expect = 1e-07 Identities = 26/88 (29%), Positives = 47/88 (53%) Frame = +1 Query: 187 SSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESE 366 S K+GP+ +F+ LP + DL F +GNVV ++ +D T S+ FGFV++++ Sbjct: 393 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 452 Query: 367 DSVERVISEGRMRDLGGKQVEIKKAEPK 450 S + I +G K+++++ K Sbjct: 453 VSAQAAIQSMNGFQIGMKRLKVQLKRSK 480 Score = 52.0 bits (123), Expect = 9e-07 Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 7/135 (5%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFG--FVTFSDPSVIDKVLEDEHNID-----GRTVEVK 162 F +YGA+ + I++D+ P+ G FVTF + HN+ +++K Sbjct: 36 FEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK 95 Query: 163 RTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGF 342 + + +D RK+F+G + TE+D+R FSS+G + E +I+ G SRG Sbjct: 96 PADSEKNNAVED----RKLFIGMISKKCTENDIRVMFSSFGQIEECRIL-RGPDGLSRGC 150 Query: 343 GFVTFESEDSVERVI 387 FVTF + + I Sbjct: 151 AFVTFTTRTMAQTAI 165 Score = 43.9 bits (102), Expect = 2e-04 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 5/86 (5%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTG--RSRGFGFVTFES-EDSVERV 384 K+FVG +P T +E DLR+ F YG V E I+ D S +S+G FVTF + + ++E Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76 Query: 385 ISEGRMRDLGGKQ--VEIKKAEPKKH 456 + M+ L G +++K A+ +K+ Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKN 102
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 54.7 bits (130), Expect = 1e-07 Identities = 26/88 (29%), Positives = 47/88 (53%) Frame = +1 Query: 187 SSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESE 366 S K+GP+ +F+ LP + DL F +GNVV ++ +D T S+ FGFV++++ Sbjct: 393 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 452 Query: 367 DSVERVISEGRMRDLGGKQVEIKKAEPK 450 S + I +G K+++++ K Sbjct: 453 VSAQAAIQSMNGFQIGMKRLKVQLKRSK 480 Score = 51.2 bits (121), Expect = 1e-06 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 7/135 (5%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFG--FVTFSDPSVIDKVLEDEHNID-----GRTVEVK 162 F +YGA+ + +++D+ P+ G FVTF + HN+ +++K Sbjct: 36 FEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK 95 Query: 163 RTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGF 342 + + +D RK+F+G + TE+D+R FSS+G + E +I+ G SRG Sbjct: 96 PADSEKNNAVED----RKLFIGMISKKCTENDIRVMFSSFGQIEECRIL-RGPDGLSRGC 150 Query: 343 GFVTFESEDSVERVI 387 FVTF + + I Sbjct: 151 AFVTFTTRAMAQTAI 165 Score = 43.5 bits (101), Expect = 3e-04 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 5/86 (5%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTG--RSRGFGFVTFES-EDSVERV 384 K+FVG +P T +E DLR+ F YG V E ++ D S +S+G FVTF + + ++E Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76 Query: 385 ISEGRMRDLGGKQ--VEIKKAEPKKH 456 + M+ L G +++K A+ +K+ Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKN 102
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 54.7 bits (130), Expect = 1e-07 Identities = 31/90 (34%), Positives = 46/90 (51%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 IFVGGLP LTE D+ FS YG +V ++ D TG+S+GF F+ +E + S + Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 397 RMRDLGGKQVEIKKAEPKKHGGDHSSNGRS 486 + G+ + + DH SN R+ Sbjct: 98 NGIKIKGRTIRV----------DHVSNYRA 117 Score = 30.0 bits (66), Expect = 3.5 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEH--NIDGRTVEV 159 F +YG I + +++DK T +GF F+ + D +++ + I GRT+ V Sbjct: 56 FSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRV 109
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 54.7 bits (130), Expect = 1e-07 Identities = 32/99 (32%), Positives = 55/99 (55%) Frame = +1 Query: 181 EMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFE 360 E +S+D R +FVG LP + E L +HF G++V +I+ + TG RGFG+V FE Sbjct: 278 ETASRD---KRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFE 334 Query: 361 SEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSN 477 + D+V + +L G+++ + ++ K+ +SN Sbjct: 335 NTDAVHLALKLNN-SELMGRKLRVMRSVNKEKLKQQNSN 372 Score = 36.2 bits (82), Expect = 0.049 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE-DEHNIDGRTVEVKRTVPR 177 HF G+I I+++ T + RGFG+V F + + L+ + + GR + V R+V + Sbjct: 304 HFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVMRSVNK 363 Query: 178 EEMS--------SKDGPKTRK 216 E++ KDG K+++ Sbjct: 364 EKLKQQNSNPSVKKDGSKSKQ 384 Score = 31.2 bits (69), Expect = 1.6 Identities = 19/53 (35%), Positives = 23/53 (43%) Frame = +1 Query: 133 NIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNV 291 N DGR P EE + R +FVG LP T + L+ F YG V Sbjct: 161 NEDGRQRTKVPLNPEEERLKNE----RTVFVGNLPVTCNKKKLKSFFKEYGQV 209
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 54.3 bits (129), Expect = 2e-07 Identities = 30/100 (30%), Positives = 50/100 (50%) Frame = +1 Query: 154 EVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRS 333 E++ +P EE + KT ++F+ + + TEDD + FS YG + E + VD TG S Sbjct: 306 ELQEEIPDEEQAIAKIQKTGRLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNS 365 Query: 334 RGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 +GF +V F + + E + G+ + I A+ K Sbjct: 366 KGFAYVLFAKPEEAVQAYIELDKQIFQGRLLHILAADEMK 405 Score = 47.0 bits (110), Expect = 3e-05 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 4/138 (2%) Frame = +1 Query: 43 KDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPREEMSSKDGPKTR- 213 K K+ + GFGFV F V+ D IDG +++K + + S++ K + Sbjct: 678 KQKNKVLSMGFGFVEFRTKEQATAVISAMDGTVIDGHKIQLKLSHRQGNAGSQEKKKAKN 737 Query: 214 -KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 KI V LP T D+ + F+S+G + ++ +RGF FV F E + Sbjct: 738 GKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFVLPKEAENAMD 796 Query: 391 EGRMRDLGGKQVEIKKAE 444 + + L G+++ ++ AE Sbjct: 797 QLQGVHLLGRRLVMQPAE 814 Score = 39.3 bits (90), Expect = 0.006 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 7/112 (6%) Frame = +1 Query: 148 TVEVKRTVPREEMSSK--DGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHS 321 +V K+T +E+ + DGP T IF+ L T L D F + V Q+ Sbjct: 618 SVSSKKTEDKEDEDEQVVDGP-TVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPD 676 Query: 322 TGR-----SRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGG 462 + S GFGFV F +++ VIS + G ++++K + + + G Sbjct: 677 PKQKNKVLSMGFGFVEFRTKEQATAVISAMDGTVIDGHKIQLKLSHRQGNAG 728 Score = 32.0 bits (71), Expect = 0.92 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 11/68 (16%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHF----------SSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 ++ V GLP LTE +L+ HF S+ ++ ++ + G+SR F F+ +++ Sbjct: 3 RVIVKGLPIYLTEPELQKHFNKRLITTHATSNVDGLITDLRILKNREGKSRRFAFIGYKN 62 Query: 364 E-DSVERV 384 E D+++ V Sbjct: 63 EQDALDAV 70
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 54.3 bits (129), Expect = 2e-07 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 2/92 (2%) Frame = +1 Query: 175 REEMSSKDGPKT--RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 +E S+ +G + +FV G+ S + ED+L+ FS +G V +IM + T SRGFGF Sbjct: 87 KEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGF 146 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAE 444 ++F + + I ++ G+ + ++KA+ Sbjct: 147 LSFSTVEEATSAIDNLNSQEFYGRVLNVQKAK 178 Score = 36.6 bits (83), Expect = 0.037 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 4/58 (6%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSD----PSVIDKVLEDEHNIDGRTVEVKR 165 F K+G +T IM++ TK RGFGF++FS S ID + E GR + V++ Sbjct: 121 FSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQE--FYGRVLNVQK 176
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 54.3 bits (129), Expect = 2e-07 Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 2/127 (1%) Frame = +1 Query: 79 FVTFSDPSVIDKVLEDE--HNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTE 252 +V F D S K L+ +G + V E +S+D R +FVG LP + + Sbjct: 251 YVVFKDESAAAKALQRNGAQIAEGFRIRVDLA---SETASRD---KRSVFVGNLPYKIED 304 Query: 253 DDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEI 432 L +HF G++V +I+ + TG RGFG+V FE+ D+V + +L G+++ + Sbjct: 305 SALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNN-SELMGRKLRV 363 Query: 433 KKAEPKK 453 ++ K+ Sbjct: 364 MRSVNKE 370 Score = 34.3 bits (77), Expect = 0.19 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE-DEHNIDGRTVEVKRTVPR 177 HF G+I I+++ T + RGFG+V F + + L+ + + GR + V R+V + Sbjct: 310 HFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVMRSVNK 369 Query: 178 EEMSSK 195 E++ + Sbjct: 370 EKLKQQ 375 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +1 Query: 172 PREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNV 291 P EE + R +FVG LP T + L+ F YG V Sbjct: 180 PEEERLKNE----RTVFVGNLPVTCNKKKLKSFFKEYGQV 215
>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (mNIFK) Length = 317 Score = 53.9 bits (128), Expect = 2e-07 Identities = 27/111 (24%), Positives = 60/111 (54%) Frame = +1 Query: 121 EDEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEH 300 +++ + +++ + + K+ +++G LPSTL+E + ++ + +G++ Sbjct: 17 QEDSQFEKALTQIQGRTKKPQQKKKEKLNRGVVYLGHLPSTLSESHIYNYCAQFGDISRF 76 Query: 301 QIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 ++ TG S+G+ FV FESED V ++++E L G+++ K P+K Sbjct: 77 RLSRSKRTGNSKGYAFVEFESED-VAKIVAETMDNYLFGERLLSCKFMPRK 126
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 53.5 bits (127), Expect = 3e-07 Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 5/122 (4%) Frame = +1 Query: 139 DGRTVEVKRTV--PREEMS--SKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQI 306 D R+ E KR+ PRE S S++ R +FV L + LT +L D F G V + QI Sbjct: 212 DDRSHERKRSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQI 271 Query: 307 MVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLG-GKQVEIKKAEPKKHGGDHSSNGR 483 + D +GRS+G +V F EDSV+ I+ R LG V++ +AE + + + R Sbjct: 272 VRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELAR 331 Query: 484 SS 489 ++ Sbjct: 332 AA 333 Score = 42.7 bits (99), Expect = 5e-04 Identities = 31/154 (20%), Positives = 69/154 (44%), Gaps = 11/154 (7%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFS-DPSVIDKVLEDEHNIDGRTVEVKRTVPRE 180 F + G + D+ I++DK + +G +V F + SV + + G V V+ T + Sbjct: 260 FEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEK 319 Query: 181 EMSSKDGPKT----------RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGR 330 +++ + ++ V + LT++D++ F +G++ + D R Sbjct: 320 NRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-R 378 Query: 331 SRGFGFVTFESEDSVERVISEGRMRDLGGKQVEI 432 S+GFG++ + + S + + DL G+ + + Sbjct: 379 SKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 53.1 bits (126), Expect = 4e-07 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Frame = +1 Query: 67 RGFGFVTFSDPSVIDKVLE-DEHNIDGRTVEVKRTVPREEMSSKDGPKTRK--------- 216 +GF +V F+ + L+ E ++GR + +K SK K Sbjct: 165 KGFAYVDFATEDALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLSKTASIQSSKK 224 Query: 217 -----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVER 381 +FVG L T+ DL++HF G + ++M TG+ +GFGFV F D+ + Sbjct: 225 EPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMK 284 Query: 382 VISEG 396 + G Sbjct: 285 AMELG 289 Score = 33.9 bits (76), Expect = 0.24 Identities = 18/45 (40%), Positives = 23/45 (51%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN 135 HFG+ G I +M + T +GFGFV F D K +E HN Sbjct: 247 HFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHN 291
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 53.1 bits (126), Expect = 4e-07 Identities = 30/90 (33%), Positives = 46/90 (51%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 IF+GGLP LTE D+ FS YG +V ++ D TG+S+GF F+ +E + S + Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 397 RMRDLGGKQVEIKKAEPKKHGGDHSSNGRS 486 + G+ + + DH SN R+ Sbjct: 98 NGIKIKGRTIRV----------DHVSNYRA 117 Score = 30.0 bits (66), Expect = 3.5 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEH--NIDGRTVEV 159 F +YG I + +++DK T +GF F+ + D +++ + I GRT+ V Sbjct: 56 FSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 109
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 53.1 bits (126), Expect = 4e-07 Identities = 27/57 (47%), Positives = 32/57 (56%) Frame = +1 Query: 223 VGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 V LP + ED+LRD F G V+ I D TG +GF FVTFES D R I+E Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAE 236 Score = 34.7 bits (78), Expect = 0.14 Identities = 15/29 (51%), Positives = 19/29 (65%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTF 90 FGK G + I +DK T +P+GF FVTF Sbjct: 196 FGKIGRVIRIFIARDKVTGLPKGFAFVTF 224
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 52.8 bits (125), Expect = 5e-07 Identities = 24/84 (28%), Positives = 46/84 (54%) Frame = +1 Query: 181 EMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFE 360 ++ S + K +F+G L T+TE+ L+ F Y + V ++ +D T +S G G++ FE Sbjct: 81 KLKSFESKKLVPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFE 140 Query: 361 SEDSVERVISEGRMRDLGGKQVEI 432 ++ E+ + E + GK++ I Sbjct: 141 DKEEAEKAMEELNYTKVNGKEIRI 164 Score = 44.3 bits (103), Expect = 2e-04 Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 5/146 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEH--NIDGRTVEVKRTVPR 177 F KY + + + D TK G G++ F D +K +E+ + ++G+ + + ++ Sbjct: 111 FKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRN 170 Query: 178 EEMSSKDGPKTRKIFVGGLPST---LTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGF 348 G +F LP LT D FS YG ++ ++ + GF Sbjct: 171 TTFRKNFGTN---VFFSNLPLNNPLLTTRVFYDTFSRYGKILSCKL------DSRKDIGF 221 Query: 349 VTFESEDSVERVISEGRMRDLGGKQV 426 V FE E + VI GK++ Sbjct: 222 VYFEDEKTARNVIKMYNNTSFFGKKI 247 Score = 37.0 bits (84), Expect = 0.029 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 9/115 (7%) Frame = +1 Query: 136 IDGRTVEVKRTVPREEMSSKDGPKTRK---------IFVGGLPSTLTEDDLRDHFSSYGN 288 +D T+ +++ E SK K K IF+ LP+ T DD+ + FS G Sbjct: 270 LDAETI-IEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVGP 328 Query: 289 VVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 + I + ++T + FVT+++ E+ I GK++ + +A+ K+ Sbjct: 329 I--KSIYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKE 381
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 52.8 bits (125), Expect = 5e-07 Identities = 31/77 (40%), Positives = 45/77 (58%) Frame = +1 Query: 223 VGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRM 402 VG L LTE+DL D F V ++++D T RSRGFG+V FE+ D++ ++ Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSG- 154 Query: 403 RDLGGKQVEIKKAEPKK 453 DL G+ V I AEP++ Sbjct: 155 EDLMGRPVRITVAEPRR 171
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 52.8 bits (125), Expect = 5e-07 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 16/144 (11%) Frame = +1 Query: 58 KMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVK---RTVPREEMSSKDGP------ 204 K+ G+GFV F K L+ + IDG+++EVK R + + K G Sbjct: 578 KLSMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFAQRGAEDDRETKKGGDAEGGKT 637 Query: 205 KTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQI---MVDHSTG--RSRGFGFVTFESED 369 K+ K+ V LP T+ D+R+ FS+YG + ++ V STG +RGF F+ F + Sbjct: 638 KSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHT 697 Query: 370 SVERVISEGRMRDLGGKQVEIKKA 441 R + + L G+ + ++ A Sbjct: 698 EAARAMEALKHTHLLGRHLVLQWA 721 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 7/72 (9%) Frame = +1 Query: 208 TRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESED------ 369 T ++FV L T + L HFS+YG + E + V +TG G F+ F + + Sbjct: 220 TSRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAY 279 Query: 370 -SVERVISEGRM 402 ++++ I +GR+ Sbjct: 280 KALDKTIFQGRL 291 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 7/52 (13%) Frame = +1 Query: 331 SRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAE-------PKKHGGD 465 S G+GFV F+++++ + + ++ GK +E+K A+ K GGD Sbjct: 580 SMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFAQRGAEDDRETKKGGD 631
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 52.8 bits (125), Expect = 5e-07 Identities = 31/102 (30%), Positives = 53/102 (51%) Frame = +1 Query: 154 EVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRS 333 + KR E+ S G R +V GL ST DL++ FS YG VV +++ + + + Sbjct: 412 DTKRLSREEKGRSSCG---RNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGA 468 Query: 334 RGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHG 459 R +GFVT + + + I+ +L GK + ++KA+ + G Sbjct: 469 RCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKSEPAG 510
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 52.4 bits (124), Expect = 7e-07 Identities = 28/77 (36%), Positives = 41/77 (53%) Frame = +1 Query: 223 VGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRM 402 V GL TE DLR+ FS YG + ++ D TGRSRGF FV FE D + + Sbjct: 121 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 180 Query: 403 RDLGGKQVEIKKAEPKK 453 +L G+++ + + K+ Sbjct: 181 MELDGRRIRVDYSITKR 197 Score = 30.8 bits (68), Expect = 2.1 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEH--NIDGRTVEVKRTVPR 177 F +YG ++ ++ D+ T RGF FV F + +E + +DGR + V ++ + Sbjct: 137 FSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK 196 Query: 178 EEMSSKDG 201 + G Sbjct: 197 RAHTPTPG 204
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 52.4 bits (124), Expect = 7e-07 Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Frame = +1 Query: 133 NIDGRTVEVKRTVPREEMSSKD-GPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIM 309 +I+G T +V + + +EE + +R IFVG + +T + + DHF G + ++ Sbjct: 38 SIEG-TPQVSQKLSKEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLL 96 Query: 310 VDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGRSS 489 D +TG +G+G++ FES E+ + + +L GK++ + + G + N ++ Sbjct: 97 YDRNTGTPKGYGYIEFESPAYREKAL-QLNGGELKGKKIAVSRKRTNIPGFNRHYNSQNQ 155 Query: 490 H 492 + Sbjct: 156 Y 156 Score = 36.2 bits (82), Expect = 0.049 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Frame = +1 Query: 1 HFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE-DEHNIDGRTVEVKR 165 HF G I ++ D++T P+G+G++ F P+ +K L+ + + G+ + V R Sbjct: 83 HFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSR 138
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 52.4 bits (124), Expect = 7e-07 Identities = 28/77 (36%), Positives = 41/77 (53%) Frame = +1 Query: 223 VGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRM 402 V GL TE DLR+ FS YG + ++ D TGRSRGF FV FE D + + Sbjct: 123 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 182 Query: 403 RDLGGKQVEIKKAEPKK 453 +L G+++ + + K+ Sbjct: 183 MELDGRRIRVDYSITKR 199 Score = 30.8 bits (68), Expect = 2.1 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEH--NIDGRTVEVKRTVPR 177 F +YG ++ ++ D+ T RGF FV F + +E + +DGR + V ++ + Sbjct: 139 FSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK 198 Query: 178 EEMSSKDG 201 + G Sbjct: 199 RAHTPTPG 206
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 52.4 bits (124), Expect = 7e-07 Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 2/152 (1%) Frame = +1 Query: 16 GAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPREEMS 189 G + + I +D+ GFGF F ++ + ++ + G+ + V R ++ Sbjct: 35 GPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVN 94 Query: 190 SKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESED 369 + G +FVG L + E L D FS+ G +V+ + GRS+G+GFV+++S + Sbjct: 95 TLIGAN---LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFE 151 Query: 370 SVERVISEGRMRDLGGKQVEIKKAEPKKHGGD 465 + + I + L K + + A ++ G+ Sbjct: 152 TADAAIEAMNNQFLMNKPITVSYAFKREGKGE 183
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 52.0 bits (123), Expect = 9e-07 Identities = 26/70 (37%), Positives = 38/70 (54%) Frame = +1 Query: 223 VGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRM 402 V GL TE DLR+ FS YG + + I+ D + RSRGF FV FE+ D + Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181 Query: 403 RDLGGKQVEI 432 +L G+++ + Sbjct: 182 MELDGRRIRV 191 Score = 36.2 bits (82), Expect = 0.049 Identities = 21/75 (28%), Positives = 37/75 (49%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F KYG I D I+ D+ ++ RGF FV F + +D E + +G ++ +R Sbjct: 138 FSKYGPIADVSIVYDQQSRRSRGFAFVYFEN---VDDAKEAKERANGMELDGRRIRVDFS 194 Query: 184 MSSKDGPKTRKIFVG 228 ++ + T I++G Sbjct: 195 ITKRPHTPTPGIYMG 209
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 52.0 bits (123), Expect = 9e-07 Identities = 26/70 (37%), Positives = 38/70 (54%) Frame = +1 Query: 223 VGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRM 402 V GL TE DLR+ FS YG + + I+ D + RSRGF FV FE+ D + Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181 Query: 403 RDLGGKQVEI 432 +L G+++ + Sbjct: 182 MELDGRRIRV 191 Score = 36.2 bits (82), Expect = 0.049 Identities = 21/75 (28%), Positives = 37/75 (49%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F KYG I D I+ D+ ++ RGF FV F + +D E + +G ++ +R Sbjct: 138 FSKYGPIADVSIVYDQQSRRSRGFAFVYFEN---VDDAKEAKERANGMELDGRRIRVDFS 194 Query: 184 MSSKDGPKTRKIFVG 228 ++ + T I++G Sbjct: 195 ITKRPHTPTPGIYMG 209
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 52.0 bits (123), Expect = 9e-07 Identities = 26/70 (37%), Positives = 38/70 (54%) Frame = +1 Query: 223 VGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRM 402 V GL TE DLR+ FS YG + + I+ D + RSRGF FV FE+ D + Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181 Query: 403 RDLGGKQVEI 432 +L G+++ + Sbjct: 182 MELDGRRIRV 191 Score = 36.2 bits (82), Expect = 0.049 Identities = 21/75 (28%), Positives = 37/75 (49%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F KYG I D I+ D+ ++ RGF FV F + +D E + +G ++ +R Sbjct: 138 FSKYGPIADVSIVYDQQSRRSRGFAFVYFEN---VDDAKEAKERANGMELDGRRIRVDFS 194 Query: 184 MSSKDGPKTRKIFVG 228 ++ + T I++G Sbjct: 195 ITKRPHTPTPGIYMG 209
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 52.0 bits (123), Expect = 9e-07 Identities = 35/155 (22%), Positives = 78/155 (50%), Gaps = 6/155 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNI--DGRTVEVKR-TVP 174 F +G I ++ D + +G+ +V F + ++ + + + + R V V R P Sbjct: 126 FSAFGNILSCKVVCDDNGS--KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183 Query: 175 RE---EMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFG 345 E E+ ++D +FV + + ++ L++ F YG +++ D S G+S+GFG Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFG 242 Query: 346 FVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 FV +E+ ++ ++ + + + + GK + + +A+ K Sbjct: 243 FVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277 Score = 43.5 bits (101), Expect = 3e-04 Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 3/165 (1%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F G + + I +D T+ P G+G+V F P+ + L + I+G+ + + P Sbjct: 38 FRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD 97 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 + + K G IF+ L ++ L FS++GN++ +++ D + S+G+ +V F Sbjct: 98 DRLR-KSG--VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDN--GSKGYAYVHF 152 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAE-PKKHGGDHSSNGRSS 489 +S + R I L +QV + + + P++ + + R++ Sbjct: 153 DSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197 Score = 30.4 bits (67), Expect = 2.7 Identities = 20/77 (25%), Positives = 33/77 (42%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 ++VG L +TED L F G + +I D T G+G+V F E ++ Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 397 RMRDLGGKQVEIKKAEP 447 + GK + ++P Sbjct: 80 NFDLINGKPFRLMWSQP 96
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 52.0 bits (123), Expect = 9e-07 Identities = 35/155 (22%), Positives = 78/155 (50%), Gaps = 6/155 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNI--DGRTVEVKR-TVP 174 F +G I ++ D + +G+ +V F + ++ + + + + R V V R P Sbjct: 126 FSAFGNILSCKVVCDDNGS--KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183 Query: 175 RE---EMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFG 345 E E+ ++D +FV + + ++ L++ F YG +++ D S G+S+GFG Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFG 242 Query: 346 FVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 FV +E+ ++ ++ + + + + GK + + +A+ K Sbjct: 243 FVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277 Score = 43.5 bits (101), Expect = 3e-04 Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 3/165 (1%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F G + + I +D T+ P G+G+V F P+ + L + I+G+ + + P Sbjct: 38 FRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD 97 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 + + K G IF+ L ++ L FS++GN++ +++ D + S+G+ +V F Sbjct: 98 DRLR-KSG--VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDN--GSKGYAYVHF 152 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAE-PKKHGGDHSSNGRSS 489 +S + R I L +QV + + + P++ + + R++ Sbjct: 153 DSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197 Score = 30.4 bits (67), Expect = 2.7 Identities = 20/77 (25%), Positives = 33/77 (42%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 ++VG L +TED L F G + +I D T G+G+V F E ++ Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 397 RMRDLGGKQVEIKKAEP 447 + GK + ++P Sbjct: 80 NFDLINGKPFRLMWSQP 96
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 52.0 bits (123), Expect = 9e-07 Identities = 35/155 (22%), Positives = 78/155 (50%), Gaps = 6/155 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNI--DGRTVEVKR-TVP 174 F +G I ++ D + +G+ +V F + ++ + + + + R V V R P Sbjct: 126 FSAFGNILSCKVVCDDNGS--KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183 Query: 175 RE---EMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFG 345 E E+ ++D +FV + + ++ L++ F YG +++ D S G+S+GFG Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFG 242 Query: 346 FVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 FV +E+ ++ ++ + + + + GK + + +A+ K Sbjct: 243 FVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277 Score = 43.5 bits (101), Expect = 3e-04 Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 3/165 (1%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F G + + I +D T+ P G+G+V F P+ + L + I+G+ + + P Sbjct: 38 FRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD 97 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 + + K G IF+ L ++ L FS++GN++ +++ D + S+G+ +V F Sbjct: 98 DRLR-KSG--VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDN--GSKGYAYVHF 152 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAE-PKKHGGDHSSNGRSS 489 +S + R I L +QV + + + P++ + + R++ Sbjct: 153 DSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197 Score = 30.4 bits (67), Expect = 2.7 Identities = 20/77 (25%), Positives = 33/77 (42%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 ++VG L +TED L F G + +I D T G+G+V F E ++ Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 397 RMRDLGGKQVEIKKAEP 447 + GK + ++P Sbjct: 80 NFDLINGKPFRLMWSQP 96
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 52.0 bits (123), Expect = 9e-07 Identities = 35/155 (22%), Positives = 78/155 (50%), Gaps = 6/155 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNI--DGRTVEVKR-TVP 174 F +G I ++ D + +G+ +V F + ++ + + + + R V V R P Sbjct: 126 FSAFGNILSCKVVCDDNGS--KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183 Query: 175 RE---EMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFG 345 E E+ ++D +FV + + ++ L++ F YG +++ D S G+S+GFG Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFG 242 Query: 346 FVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 FV +E+ ++ ++ + + + + GK + + +A+ K Sbjct: 243 FVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277 Score = 43.5 bits (101), Expect = 3e-04 Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 3/165 (1%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F G + + I +D T+ P G+G+V F P+ + L + I+G+ + + P Sbjct: 38 FRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD 97 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 + + K G IF+ L ++ L FS++GN++ +++ D + S+G+ +V F Sbjct: 98 DRLR-KSG--VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDN--GSKGYAYVHF 152 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAE-PKKHGGDHSSNGRSS 489 +S + R I L +QV + + + P++ + + R++ Sbjct: 153 DSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197 Score = 30.4 bits (67), Expect = 2.7 Identities = 20/77 (25%), Positives = 33/77 (42%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 ++VG L +TED L F G + +I D T G+G+V F E ++ Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 397 RMRDLGGKQVEIKKAEP 447 + GK + ++P Sbjct: 80 NFDLINGKPFRLMWSQP 96
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 52.0 bits (123), Expect = 9e-07 Identities = 35/155 (22%), Positives = 78/155 (50%), Gaps = 6/155 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNI--DGRTVEVKR-TVP 174 F +G I ++ D + +G+ +V F + ++ + + + + R V V R P Sbjct: 126 FSAFGNILSCKVVCDDNGS--KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183 Query: 175 RE---EMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFG 345 E E+ ++D +FV + + ++ L++ F YG +++ D S G+S+GFG Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFG 242 Query: 346 FVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 FV +E+ ++ ++ + + + + GK + + +A+ K Sbjct: 243 FVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277 Score = 43.5 bits (101), Expect = 3e-04 Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 3/165 (1%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F G + + I +D T+ P G+G+V F P+ + L + I+G+ + + P Sbjct: 38 FRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD 97 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 + + K G IF+ L ++ L FS++GN++ +++ D + S+G+ +V F Sbjct: 98 DRLR-KSG--VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDN--GSKGYAYVHF 152 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAE-PKKHGGDHSSNGRSS 489 +S + R I L +QV + + + P++ + + R++ Sbjct: 153 DSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197 Score = 30.4 bits (67), Expect = 2.7 Identities = 20/77 (25%), Positives = 33/77 (42%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 ++VG L +TED L F G + +I D T G+G+V F E ++ Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 397 RMRDLGGKQVEIKKAEP 447 + GK + ++P Sbjct: 80 NFDLINGKPFRLMWSQP 96
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 52.0 bits (123), Expect = 9e-07 Identities = 35/155 (22%), Positives = 78/155 (50%), Gaps = 6/155 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNI--DGRTVEVKR-TVP 174 F +G I ++ D + +G+ +V F + ++ + + + + R V V R P Sbjct: 126 FSAFGNILSCKVVCDDNGS--KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183 Query: 175 RE---EMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFG 345 E E+ ++D +FV + + ++ L++ F YG +++ D S G+S+GFG Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFG 242 Query: 346 FVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 450 FV +E+ ++ ++ + + + + GK + + +A+ K Sbjct: 243 FVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277 Score = 43.5 bits (101), Expect = 3e-04 Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 3/165 (1%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F G + + I +D T+ P G+G+V F P+ + L + I+G+ + + P Sbjct: 38 FRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD 97 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 + + K G IF+ L ++ L FS++GN++ +++ D + S+G+ +V F Sbjct: 98 DRLR-KSG--VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDN--GSKGYAYVHF 152 Query: 358 ESEDSVERVISEGRMRDLGGKQVEIKKAE-PKKHGGDHSSNGRSS 489 +S + R I L +QV + + + P++ + + R++ Sbjct: 153 DSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197 Score = 30.4 bits (67), Expect = 2.7 Identities = 20/77 (25%), Positives = 33/77 (42%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 ++VG L +TED L F G + +I D T G+G+V F E ++ Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 397 RMRDLGGKQVEIKKAEP 447 + GK + ++P Sbjct: 80 NFDLINGKPFRLMWSQP 96
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 52.0 bits (123), Expect = 9e-07 Identities = 24/79 (30%), Positives = 42/79 (53%) Frame = +1 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 R I+VGGL +TE L + F +G++ + Q+ D+ + R RGF F+ +E + I Sbjct: 6 RTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAID 65 Query: 391 EGRMRDLGGKQVEIKKAEP 447 +L G+ + + A+P Sbjct: 66 NMNDSELCGRTIRVNLAKP 84
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 51.2 bits (121), Expect = 1e-06 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 10/170 (5%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFS-DPSVIDKVLE-DEHNIDGRTVEVKRTVPR 177 FG G + ++ I+ K RG G V F+ + SV D + + D R + V++ P Sbjct: 142 FGTVGEVVEADIITSKGHH--RGMGTVEFTKNESVQDAISKFDGALFMDRKLMVRQDNPP 199 Query: 178 EEMSSKDGPKTRK--------IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRS 333 E + + K + +F+ LP ++ L+D F G+V+ + +D + G S Sbjct: 200 PEAAKEFSKKATREEIDNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFN-GFS 258 Query: 334 RGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGR 483 RGFG V + +ED + R I ++ G+ +E+++ K + N R Sbjct: 259 RGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEVREGRFNKRKNNDRYNQR 308 Score = 41.2 bits (95), Expect = 0.002 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 2/86 (2%) Frame = +1 Query: 142 GRTVE--VKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVD 315 GRT+ V+R + R+ ++K + IFV L T +DL++ F + G VVE I+ Sbjct: 98 GRTLGPIVERDLERQFDATKRNFEN-SIFVRNLTFDCTPEDLKELFGTVGEVVEADIIT- 155 Query: 316 HSTGRSRGFGFVTFESEDSVERVISE 393 S G RG G V F +SV+ IS+ Sbjct: 156 -SKGHHRGMGTVEFTKNESVQDAISK 180
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 51.2 bits (121), Expect = 1e-06 Identities = 28/93 (30%), Positives = 49/93 (52%) Frame = +1 Query: 163 RTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGF 342 +T P E SK PK ++ V +P + DLR F +G +++ +I+ + S+GF Sbjct: 102 QTQPSENTESKSQPK--RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGF 157 Query: 343 GFVTFESEDSVERVISEGRMRDLGGKQVEIKKA 441 GFVTFE+ +R + + G+++E+ A Sbjct: 158 GFVTFENSADADRAREKLHGTVVEGRKIEVNNA 190 Score = 38.9 bits (89), Expect = 0.008 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Frame = +1 Query: 4 FGKYGAITD-SVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVP 174 FG++G I D +I ++ +K GFGFVTF + + D+ E H ++GR +EV Sbjct: 136 FGQFGKILDVEIIFNERGSK---GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 192 Query: 175 REEMSSK 195 R + K Sbjct: 193 RVMTNKK 199
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 51.2 bits (121), Expect = 1e-06 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 3/153 (1%) Frame = +1 Query: 16 GAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNID--GRTVEVKRTVPREEMS 189 G + + KD+ T +GFGFV F D ++ + I G+ ++V + E Sbjct: 37 GPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHE--- 93 Query: 190 SKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVE-HQIMVDHSTGRSRGFGFVTFESE 366 K+ IFVG L + E L D FS++G +++ +IM D +G S+GF F+ F S Sbjct: 94 -KNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASF 152 Query: 367 DSVERVISEGRMRDLGGKQVEIKKAEPKKHGGD 465 ++ + + + L + + + A + G+ Sbjct: 153 EASDTALEAMNGQFLCNRAITVSYAFKRDSKGE 185 Score = 46.2 bits (108), Expect = 5e-05 Identities = 28/87 (32%), Positives = 41/87 (47%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 I+VGGL ++E L + G VV + D T +GFGFV F E+ + I Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74 Query: 397 RMRDLGGKQVEIKKAEPKKHGGDHSSN 477 M L GK +++ KA + D +N Sbjct: 75 NMIKLYGKPIKVNKASAHEKNMDVGAN 101
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 51.2 bits (121), Expect = 1e-06 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 7/145 (4%) Frame = +1 Query: 37 IMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN-IDGRTVEVKRTVP-----REEMSSKD 198 ++++++T M G+ FV F+ P + + I G K RE+ SK Sbjct: 124 LIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWASGGGLREKSISKA 183 Query: 199 GPKTRKIFVGGLPSTLTEDDLRDHFSS-YGNVVEHQIMVDHSTGRSRGFGFVTFESEDSV 375 + IFVG L + E D+ F+S Y + +IM D T SRG+GFV F E+ Sbjct: 184 SEYS--IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQ 241 Query: 376 ERVISEGRMRDLGGKQVEIKKAEPK 450 + ++E + + G + + + A PK Sbjct: 242 KSALAEMQGQICGDRPIRVGLATPK 266 Score = 46.2 bits (108), Expect = 5e-05 Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 27/168 (16%) Frame = +1 Query: 10 KYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVL-EDEHNIDG-RTVEVKRTVPREE 183 +Y + + IM D T + RG+GFV F+D + L E + I G R + V P+ + Sbjct: 209 RYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSK 268 Query: 184 M--------------------SSKDGPK-----TRKIFVGGLPSTLTEDDLRDHFSSYGN 288 +++ P+ +FVGGL ++E++L+ F ++G Sbjct: 269 AHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGE 328 Query: 289 VVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEI 432 +V +I +G GFV F + S E I++ + LG ++ + Sbjct: 329 IVYVKI------PPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRL 370
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 50.8 bits (120), Expect = 2e-06 Identities = 26/80 (32%), Positives = 51/80 (63%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +FVGG+ + E ++R F+ YG+V E +I+ D TG S+G+GFV+F ++ V++++ Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVES- 99 Query: 397 RMRDLGGKQVEIKKAEPKKH 456 + GK++++ A K++ Sbjct: 100 -QINFHGKKLKLGPAIRKQN 118
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/80 (32%), Positives = 51/80 (63%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +FVGG+ + E ++R F+ YG+V E +I+ D TG S+G+GFV+F ++ V++++ Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVES- 99 Query: 397 RMRDLGGKQVEIKKAEPKKH 456 + GK++++ A K++ Sbjct: 100 -QINFHGKKLKLGPAIRKQN 118
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/80 (32%), Positives = 51/80 (63%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +FVGG+ + E ++R F+ YG+V E +I+ D TG S+G+GFV+F ++ V++++ Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVES- 99 Query: 397 RMRDLGGKQVEIKKAEPKKH 456 + GK++++ A K++ Sbjct: 100 -QINFHGKKLKLGPAIRKQN 118
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 50.4 bits (119), Expect = 3e-06 Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 5/129 (3%) Frame = +1 Query: 73 FGFVTFSDPSVIDKVLEDEHNIDGRTVEVK-----RTVPREEMSSKDGPKTRKIFVGGLP 237 F F +D K D + VK + V ++E R ++V GL Sbjct: 400 FAFDACNDVPAPPKESSASEGADQKMSSVKEEQDIKPVIKDEKGRASCSSGRNLWVSGLS 459 Query: 238 STLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGG 417 S+ DL+ FS +G V+ +++ + + +R +GFVT + D + IS +L G Sbjct: 460 SSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHG 519 Query: 418 KQVEIKKAE 444 + + ++KA+ Sbjct: 520 RMISVEKAK 528 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEH--NIDGR--TVEVKRTV 171 F K+G + + ++ + + R +GFVT S K + H + GR +VE + Sbjct: 471 FSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEKAKNE 530 Query: 172 PREEMSS 192 P E+ SS Sbjct: 531 PSEKKSS 537
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 50.4 bits (119), Expect = 3e-06 Identities = 25/78 (32%), Positives = 45/78 (57%) Frame = +1 Query: 193 KDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDS 372 ++ P +R +++G +P TE+ + D S+ G V+ ++M D TGRS+G+ F+ F +S Sbjct: 12 QNNPPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLES 71 Query: 373 VERVISEGRMRDLGGKQV 426 S +R+L G Q+ Sbjct: 72 -----SASAVRNLNGYQL 84
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 50.1 bits (118), Expect = 3e-06 Identities = 24/81 (29%), Positives = 42/81 (51%) Frame = +1 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 R ++VGGL + + L F +G++ + QI +D+ T + RGF FV FE + I Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65 Query: 391 EGRMRDLGGKQVEIKKAEPKK 453 +L G+ + + A+P + Sbjct: 66 NMNESELFGRTIRVNLAKPMR 86 Score = 32.3 bits (72), Expect = 0.71 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTF----SDPSVIDKVLEDEHNIDGRTVEVKRTV 171 F +G ITD I D T+ RGF FV F + ID + E E + GRT+ V Sbjct: 26 FIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE--LFGRTIRVNLAK 83 Query: 172 PREEMSSKDG 201 P M K+G Sbjct: 84 P---MRIKEG 90
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 50.1 bits (118), Expect = 3e-06 Identities = 24/81 (29%), Positives = 42/81 (51%) Frame = +1 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 R ++VGGL + + L F +G++ + QI +D+ T + RGF FV FE + I Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65 Query: 391 EGRMRDLGGKQVEIKKAEPKK 453 +L G+ + + A+P + Sbjct: 66 NMNESELFGRTIRVNLAKPMR 86 Score = 32.3 bits (72), Expect = 0.71 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTF----SDPSVIDKVLEDEHNIDGRTVEVKRTV 171 F +G ITD I D T+ RGF FV F + ID + E E + GRT+ V Sbjct: 26 FIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE--LFGRTIRVNLAK 83 Query: 172 PREEMSSKDG 201 P M K+G Sbjct: 84 P---MRIKEG 90
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 50.1 bits (118), Expect = 3e-06 Identities = 27/93 (29%), Positives = 49/93 (52%) Frame = +1 Query: 163 RTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGF 342 +T P E +K PK ++ V +P + DLR F +G +++ +I+ + S+GF Sbjct: 103 QTQPSENTENKSQPK--RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGF 158 Query: 343 GFVTFESEDSVERVISEGRMRDLGGKQVEIKKA 441 GFVTFE+ +R + + G+++E+ A Sbjct: 159 GFVTFENSADADRAREKLHGTVVEGRKIEVNNA 191 Score = 38.9 bits (89), Expect = 0.008 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Frame = +1 Query: 4 FGKYGAITD-SVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVP 174 FG++G I D +I ++ +K GFGFVTF + + D+ E H ++GR +EV Sbjct: 137 FGQFGKILDVEIIFNERGSK---GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 193 Query: 175 REEMSSK 195 R + K Sbjct: 194 RVMTNKK 200
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 50.1 bits (118), Expect = 3e-06 Identities = 30/100 (30%), Positives = 47/100 (47%) Frame = +1 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 MS P +F+ + +DLR F YG +V+ I +D T R RGF +V FE Sbjct: 1 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED 60 Query: 364 EDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGR 483 E + + + G+Q+EI+ A+ GD + G+ Sbjct: 61 VRDAEDALYNLNRKWVCGRQIEIQFAQ-----GDRKTPGQ 95 Score = 39.3 bits (90), Expect = 0.006 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVK 162 FG+YG I D I D +T+ PRGF +V F D + L + + + GR +E++ Sbjct: 30 FGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQ 84
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 50.1 bits (118), Expect = 3e-06 Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 3/147 (2%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVPR 177 F +YG I++ I+K+ FGFV S D+ +++ H+ ++G + V+ Sbjct: 22 FSQYGKISECDIVKN--------FGFVHMDSKSEADEAIQNLHHYMLNGMAMNVEM---- 69 Query: 178 EEMSSKDGPKTR-KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 SK PKT K+ VG + S+ T +LR F YG VVE I+ D + FV Sbjct: 70 ----SKGKPKTSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKD--------YAFVH 117 Query: 355 FESEDSVERVISEGRMRDLGGKQVEIK 435 E + IS GK + +K Sbjct: 118 MERVEDAMEAISGLDNTAFQGKLMSVK 144 Score = 44.3 bits (103), Expect = 2e-04 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 KIFVG L T +++R FS YG + E I+ + FGFV +S+ + I Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIV--------KNFGFVHMDSKSEADEAIQN 54 Query: 394 GRMRDLGG--KQVEIKKAEPKKHGGDHSSNGRSS 489 L G VE+ K +PK H N SS Sbjct: 55 LHHYMLNGMAMNVEMSKGKPKTSTKLHVGNISSS 88
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 50.1 bits (118), Expect = 3e-06 Identities = 26/80 (32%), Positives = 51/80 (63%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +FVGG+ + E ++R F+ YG+V E +I+ D TG S+G+GFV+F ++ V++++ Sbjct: 42 VFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVES- 99 Query: 397 RMRDLGGKQVEIKKAEPKKH 456 + GK++++ A K++ Sbjct: 100 -QINFHGKKLKLGPAIRKQN 118
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 50.1 bits (118), Expect = 3e-06 Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Frame = +1 Query: 85 TFSDPS--VIDKVLEDEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTEDD 258 TFS P+ ++ +++ +V++ + + + + P ++V LP+ L E Sbjct: 3 TFSGPAGPILSLNPQEDVEFQKEVAQVRKRITQRKKQEQLTPGV--VYVRHLPNLLDETQ 60 Query: 259 LRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQV 426 + +FS +G V ++ TG S+G+ FV FESED V ++++E L G+++ Sbjct: 61 IFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESED-VAKIVAETMNNYLFGERL 115
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 49.7 bits (117), Expect = 4e-06 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 15/142 (10%) Frame = +1 Query: 61 MPRGFGFVTF-SDPSVIDKVLEDEHNIDGRTVEVKRTVPRE--------EMSSKDGPKT- 210 + + F F+ F S + D N G+ ++V+R PR+ +M+S+ T Sbjct: 228 LDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRR--PRDYQPSQNTFDMNSRMPVSTI 285 Query: 211 -----RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSV 375 KIF+GGLP+ LTED +++ S+G + + VD S G S+G+ F + Sbjct: 286 VVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPTLT 344 Query: 376 ERVISEGRMRDLGGKQVEIKKA 441 ++ I+ LG KQ+ ++ A Sbjct: 345 DQAIAGLNGMQLGDKQLVVQLA 366
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 49.7 bits (117), Expect = 4e-06 Identities = 23/56 (41%), Positives = 37/56 (66%) Frame = +1 Query: 205 KTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDS 372 KT ++F+ L T+TEDD+R+HF+ +G +VE + +D S G S+GF + +E S Sbjct: 306 KTSRLFLRNLSYTVTEDDVREHFAKFGILVEVHVPLD-SKGHSKGFAMIRYEKPAS 360 Score = 45.4 bits (106), Expect = 8e-05 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 11/136 (8%) Frame = +1 Query: 70 GFGFVTFSDPS-------VIDKVLEDEHNID----GRTVEVKRTVPREEMSSKDGPKTRK 216 GFGFV F V+D + D H I R ++ RE+M+ K + K Sbjct: 646 GFGFVAFRTKDQAQAALKVMDGQVLDAHKISVKASHRGLDAAEERRREDMAKKAANQGTK 705 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 + V LP +T+ ++R FS+YG +V +I + SRGF F F + + Sbjct: 706 LVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQS-SRGFAFAEFSTAKEALNAFNSL 764 Query: 397 RMRDLGGKQVEIKKAE 444 + + G+++ I A+ Sbjct: 765 KDTHILGRRLVIDFAQ 780 Score = 38.1 bits (87), Expect = 0.013 Identities = 22/78 (28%), Positives = 38/78 (48%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 +IFV LP T+TE + R HFS+ G V ++ +R GFV ++S + R + Sbjct: 6 RIFVKNLPPTITEAEFRKHFSAEGRQVTDVKLIP-----ARHIGFVGYKSAEDAARAVKY 60 Query: 394 GRMRDLGGKQVEIKKAEP 447 + ++ + A+P Sbjct: 61 FNRSFIRMSRISVDIAKP 78
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 49.7 bits (117), Expect = 4e-06 Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 6/104 (5%) Frame = +1 Query: 160 KRTVPRE-EMSSKDGPKTR-----KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHS 321 ++ VP+E E+S+++ T+ ++F+ + TE+D + FS YG + E + VD Sbjct: 278 EQEVPQEDEVSAEEAALTKIRATGRLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTR 337 Query: 322 TGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 TG+S+GF +V F+ + E + G+ + I A+ KK Sbjct: 338 TGQSKGFAYVLFKDPEHAANAYIELDKQIFQGRLLHILPADAKK 381 Score = 44.7 bits (104), Expect = 1e-04 Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 6/140 (4%) Frame = +1 Query: 43 KDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPREEM--SSKDGPK- 207 K+ K+ GFGF+ F V+ D IDG +++K + + + +SK K Sbjct: 650 KNSDKKLSMGFGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKISHKQSSLPKTSKGSKKK 709 Query: 208 -TRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERV 384 + KI V LP T D+ + FSS+G + ++ +RGF FV F E Sbjct: 710 ISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPSEAENA 768 Query: 385 ISEGRMRDLGGKQVEIKKAE 444 + + + L G+++ ++ AE Sbjct: 769 MDQLQGVHLLGRRLVMQYAE 788 Score = 31.6 bits (70), Expect = 1.2 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHF----SSYGNVVEHQI----MVDHSTGRSRGFGFVTFESE 366 ++ V GLP L E LR HF G E QI +V +G SR F F+ + SE Sbjct: 3 RVIVKGLPIYLEEARLRAHFLKRLQQQGRGSEDQITDVKIVKDKSGNSRRFAFIGYRSE 61 Score = 28.9 bits (63), Expect = 7.8 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 7/74 (9%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPS-VIDKVLE-DEHNIDGRTVEV-----K 162 F YG + + + D T +GF +V F DP + +E D+ GR + + K Sbjct: 321 FSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIELDKQIFQGRLLHILPADAK 380 Query: 163 RTVPREEMSSKDGP 204 +T +E K+ P Sbjct: 381 KTHRLDEFDLKNLP 394
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 49.7 bits (117), Expect = 4e-06 Identities = 26/79 (32%), Positives = 47/79 (59%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +FVGG+ + E ++R +F YG V E +I+ D TG S+G+GFV+F V++++ Sbjct: 38 VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSFLDNVDVQKIVES- 95 Query: 397 RMRDLGGKQVEIKKAEPKK 453 + GK++++ A K+ Sbjct: 96 -QISVHGKRLKLGPAIRKQ 113
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 49.7 bits (117), Expect = 4e-06 Identities = 28/94 (29%), Positives = 49/94 (52%) Frame = +1 Query: 172 PREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFV 351 P E+++ K +T ++F+ + +E+D R FS YG + E I +D TG+S+GF +V Sbjct: 298 PEEQIAQKI-EETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYV 356 Query: 352 TFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 F ++ R + G+ + I A+ KK Sbjct: 357 QFLKKEDATRAYRSLDKQIFQGRLLHILPADKKK 390 Score = 47.0 bits (110), Expect = 3e-05 Identities = 24/77 (31%), Positives = 44/77 (57%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 ++ V GLP TE+ LR+ FS G+V + ++M + G SR F F+ ++S D+ ER + Sbjct: 3 RLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRN-GESRKFAFIGYKSADAAERAVKY 61 Query: 394 GRMRDLGGKQVEIKKAE 444 + ++E++ A+ Sbjct: 62 FNKSFIDTARIEVEFAK 78 Score = 45.4 bits (106), Expect = 8e-05 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 6/140 (4%) Frame = +1 Query: 43 KDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPR----EEMSSKDGP 204 K+ + GFGFV F + + D H +DG +++K + + S K Sbjct: 655 KNSGKTLSMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKSG 714 Query: 205 KTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERV 384 K+ KI + LP T DL + F ++G + ++ +RGF FV F E Sbjct: 715 KSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQS-ARGFAFVEFNLMKEAETA 773 Query: 385 ISEGRMRDLGGKQVEIKKAE 444 +S+ L G+++ ++ AE Sbjct: 774 MSQLEGVHLLGRRLVMQYAE 793
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 49.3 bits (116), Expect = 6e-06 Identities = 24/80 (30%), Positives = 47/80 (58%) Frame = +1 Query: 202 PKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVER 381 P ++FVG L + + ++ L FS Y ++V+ +++ D G++RGFGFV+F+ D + Sbjct: 27 PNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLK 85 Query: 382 VISEGRMRDLGGKQVEIKKA 441 E + +G + V++ +A Sbjct: 86 AWREKNGKYIGSRPVKLSRA 105 Score = 30.8 bits (68), Expect = 2.1 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKR 165 F +Y ++ + +++D+ K RGFGFV+F D K +++ I R V++ R Sbjct: 50 FSEYPSLVKTKVVRDREGKT-RGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSR 104
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 49.3 bits (116), Expect = 6e-06 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Frame = +1 Query: 61 MPRGFGFVTF-SDPSVIDKVLEDEHNIDGRTVEVKRTVPREEMSSKDG------------ 201 + + F F+ F S + D N G+ ++V+R PR+ S++ Sbjct: 219 LDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRR--PRDYQPSQNTFDMNARMPVSSI 276 Query: 202 --PKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSV 375 KIF+GGLP+ LTED +++ S+G + + VD S G S+G+ F + Sbjct: 277 VVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPTLT 335 Query: 376 ERVISEGRMRDLGGKQVEIKKA 441 ++ I+ LG KQ+ ++ A Sbjct: 336 DQAIAGLNGMQLGDKQLVVQLA 357
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 49.3 bits (116), Expect = 6e-06 Identities = 25/89 (28%), Positives = 46/89 (51%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 +I++G L S ++E D+ F YG + + + GFGFV F+ + E + + Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLL--------KNGFGFVEFDDKRDAEDAVHD 55 Query: 394 GRMRDLGGKQVEIKKAEPKKHGGDHSSNG 480 ++LGG++V + ++P+ GGD G Sbjct: 56 LNGKELGGERVILDYSKPRGGGGDRGGFG 84
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 49.3 bits (116), Expect = 6e-06 Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 4/115 (3%) Frame = +1 Query: 121 EDEHNIDGRTVEV-KRTVPR---EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGN 288 E ++D + E +R VP+ EE++ + +T ++F+ + T E+D R FS +G Sbjct: 311 EQNESLDTKKEEQPERAVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGE 370 Query: 289 VVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 + E + +D TG+S+GF +V F+ + E + G+ + I E KK Sbjct: 371 LEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVELDKQIFQGRLLHILPGEEKK 425 Score = 35.8 bits (81), Expect = 0.064 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 15/92 (16%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHF---------------SSYGNVVEHQIMVDHSTGRSRGFGF 348 +I V GLP LT+D+LR+HF S + + +I+ D + G SR FGF Sbjct: 3 RIIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRN-GESRRFGF 61 Query: 349 VTFESEDSVERVISEGRMRDLGGKQVEIKKAE 444 + + +E+ + + ++E+ A+ Sbjct: 62 IGYRNEEDAFDAVEYFNGSFINTSKIEVSMAK 93
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 49.3 bits (116), Expect = 6e-06 Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 9/172 (5%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE 183 F KYG + + ++K+ +GFV ++ N++G T+ + + E Sbjct: 27 FEKYGTVVECDVVKN--------YGFVHMETEQQGRDAIQ---NLNGYTLN-EFAIKVEA 74 Query: 184 MSSKDGPKT--RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 S+ P T KIFVG L ++R+ F YG VVE I+ R +GFV Sbjct: 75 AKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNYGFVHL 126 Query: 358 ESEDSVERVISEGRMRDLGGK----QVEIKKAEPKKHGGDHSS---NGRSSH 492 + V+ I E R + G+ QV + PK GD GRS H Sbjct: 127 DCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGRSGH 178 Score = 34.3 bits (77), Expect = 0.19 Identities = 22/85 (25%), Positives = 37/85 (43%) Frame = +1 Query: 199 GPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVE 378 G T K+F+G L +LR F YG VVE ++ + +GFV E+E Sbjct: 3 GAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGR 54 Query: 379 RVISEGRMRDLGGKQVEIKKAEPKK 453 I L ++++ A+ ++ Sbjct: 55 DAIQNLNGYTLNEFAIKVEAAKSRR 79
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 49.3 bits (116), Expect = 6e-06 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 14/158 (8%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPRE- 180 F KYG I + + +K++H +P F FV F DP + + + D ++ PR Sbjct: 34 FYKYGRIRE-IELKNRHGLVP--FAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRAY 90 Query: 181 ------EMSSKDGPKTRK----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGR 330 +S++GP TR+ + V GLP + + DL+DH G+V + D Sbjct: 91 GGRGGWPRASRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD----- 145 Query: 331 SRGFGFVTFESEDSVE---RVISEGRMRDLGGKQVEIK 435 G G V + ++ +E R + + + R G+ I+ Sbjct: 146 --GMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIR 181 Score = 40.8 bits (94), Expect = 0.002 Identities = 28/90 (31%), Positives = 40/90 (44%) Frame = +1 Query: 193 KDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDS 372 + G +I+VG LP+ + E DL D F YG + E ++ H F FV FE Sbjct: 8 RGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGL---VPFAFVRFEDPRD 64 Query: 373 VERVISEGRMRDLGGKQVEIKKAEPKKHGG 462 E I D G Q ++ P+ +GG Sbjct: 65 AEDAIYGRNGYDYG--QCRLRVEFPRAYGG 92
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 48.9 bits (115), Expect = 7e-06 Identities = 27/109 (24%), Positives = 55/109 (50%), Gaps = 3/109 (2%) Frame = +1 Query: 70 GFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPST 243 G+GFV + P ++ + + + +T++V P S D K ++V GLP T Sbjct: 240 GYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARP-----SSDAIKGANLYVSGLPKT 294 Query: 244 LTEDDLRDHFSSYGNVVEHQIMVDHSTG-RSRGFGFVTFESEDSVERVI 387 +T+ +L F+ +G ++ +I+ + +++G GF+ F+ + R I Sbjct: 295 MTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAI 343 Score = 42.0 bits (97), Expect = 9e-04 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 14/100 (14%) Frame = +1 Query: 190 SKDGPKTR-KIFVGGLPSTLTEDDLRDHFSSYGNVV-------EHQIMVD------HSTG 327 S +TR + V LP T+TED++R FSS G + + Q+ +D S G Sbjct: 177 SNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG 236 Query: 328 RSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEP 447 +S G+GFV + E+ ++ L K +++ A P Sbjct: 237 QSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARP 276 Score = 30.4 bits (67), Expect = 2.7 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSD 96 FG +GA+ I+KD T +G+GFV+ ++ Sbjct: 458 FGPFGAVQSVKIVKDPTTNQCKGYGFVSMTN 488
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 48.9 bits (115), Expect = 7e-06 Identities = 24/70 (34%), Positives = 41/70 (58%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 ++VG LP L E L+ +F +G V+ ++ TG S+G+GFV FE D V ++++E Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFEC-DEVAKIVAET 105 Query: 397 RMRDLGGKQV 426 L G+++ Sbjct: 106 MNNYLMGERI 115
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 48.9 bits (115), Expect = 7e-06 Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 4/134 (2%) Frame = +1 Query: 58 KMPRGFGFVTFSD----PSVIDKVLEDEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFV 225 K RGF F+ + D +++ + + G V V+ P EE + K + +FV Sbjct: 286 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFV 345 Query: 226 GGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMR 405 L +T+TE+ L FS +G + + + D + FV FE + + + E + Sbjct: 346 RNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEMNGK 397 Query: 406 DLGGKQVEIKKAEP 447 ++ G+++EI A+P Sbjct: 398 EIEGEEIEIVLAKP 411 Score = 44.3 bits (103), Expect = 2e-04 Identities = 18/58 (31%), Positives = 37/58 (63%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVI 387 ++FVG +P L ED+L F G + + ++M+D +G++RG+ F+TF +++ + + Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 223 Score = 41.6 bits (96), Expect = 0.001 Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 2/141 (1%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPR 177 F K G I D +M D + RG+ F+TF + ++ D + I P Sbjct: 185 FEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIR----------PG 234 Query: 178 EEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTF 357 + + ++FVG +P T++++ + FS + I+ + + GF Sbjct: 235 KHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFL 294 Query: 358 ESEDSVERVISEGRMRDLGGK 420 E ED + ++ R R + GK Sbjct: 295 EYED--HKSAAQARRRLMSGK 313
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 48.9 bits (115), Expect = 7e-06 Identities = 27/109 (24%), Positives = 55/109 (50%), Gaps = 3/109 (2%) Frame = +1 Query: 70 GFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPST 243 G+GFV + P ++ + + + +T++V P S D K ++V GLP T Sbjct: 204 GYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARP-----SSDAIKGANLYVSGLPKT 258 Query: 244 LTEDDLRDHFSSYGNVVEHQIMVDHSTG-RSRGFGFVTFESEDSVERVI 387 +T+ +L F+ +G ++ +I+ + +++G GF+ F+ + R I Sbjct: 259 MTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAI 307 Score = 42.0 bits (97), Expect = 9e-04 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 14/100 (14%) Frame = +1 Query: 190 SKDGPKTR-KIFVGGLPSTLTEDDLRDHFSSYGNVV-------EHQIMVD------HSTG 327 S +TR + V LP T+TED++R FSS G + + Q+ +D S G Sbjct: 141 SNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG 200 Query: 328 RSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEP 447 +S G+GFV + E+ ++ L K +++ A P Sbjct: 201 QSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARP 240 Score = 30.4 bits (67), Expect = 2.7 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSD 96 FG +GA+ I+KD T +G+GFV+ ++ Sbjct: 422 FGPFGAVQSVKIVKDPTTNQCKGYGFVSMTN 452
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 48.5 bits (114), Expect = 1e-05 Identities = 21/76 (27%), Positives = 46/76 (60%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 K+F+GGLP+ L +D +++ +S+G + ++ D +TG S+G+ F + + ++ I+ Sbjct: 260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 319 Query: 394 GRMRDLGGKQVEIKKA 441 LG K++ +++A Sbjct: 320 LNGMQLGDKKLLVQRA 335
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 48.5 bits (114), Expect = 1e-05 Identities = 21/76 (27%), Positives = 46/76 (60%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 K+F+GGLP+ L +D +++ +S+G + ++ D +TG S+G+ F + + ++ I+ Sbjct: 260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 319 Query: 394 GRMRDLGGKQVEIKKA 441 LG K++ +++A Sbjct: 320 LNGMQLGDKKLLVQRA 335
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 48.5 bits (114), Expect = 1e-05 Identities = 24/92 (26%), Positives = 49/92 (53%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 KIF+GGLP+ L +D +++ S+G + ++ D +TG S+G+ F + ++ I+ Sbjct: 208 KIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAG 267 Query: 394 GRMRDLGGKQVEIKKAEPKKHGGDHSSNGRSS 489 LG K++ +++A +++N S Sbjct: 268 LNGMQLGDKKLIVQRASVGAKNAQNAANTTQS 299
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 48.5 bits (114), Expect = 1e-05 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 5/103 (4%) Frame = +1 Query: 160 KRTVPREEMSSKDGP-----KTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHST 324 K P +E S+D KT ++F+ L T E+D R FS YG + E + ++ T Sbjct: 279 KAATPVDEEPSEDPTIVSIRKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKT 338 Query: 325 GRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 453 G+ +GF V FE ++ + G+ + I +PKK Sbjct: 339 GQCKGFAHVQFEDPENAIAAYEAQDGKIFQGRLLHILPGKPKK 381 Score = 47.8 bits (112), Expect = 2e-05 Identities = 35/138 (25%), Positives = 70/138 (50%), Gaps = 4/138 (2%) Frame = +1 Query: 43 KDKHTKMPRGFGFVTFS--DPSVIDKVLEDEHNIDGRTVEVKRTVPREEMSSKDGPKT-- 210 K+K + GFGFV FS + + I + D H +DG +++K + ++ + + K Sbjct: 643 KNKGKFLSMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKISNRGQDEETTETKKAID 702 Query: 211 RKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 KI + LP T+ D++ F ++G++ ++ ++ SRGF F + S E +S Sbjct: 703 SKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNS-ESRGFAFAEYVSAKEAEHAMS 761 Query: 391 EGRMRDLGGKQVEIKKAE 444 + L G+++ ++ A+ Sbjct: 762 ALQGTHLLGRRLVLQYAQ 779
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 48.1 bits (113), Expect = 1e-05 Identities = 25/81 (30%), Positives = 40/81 (49%) Frame = +1 Query: 202 PKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVER 381 P +FV + +DLR F YG +V+ + +D T R RGF +V FE E Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66 Query: 382 VISEGRMRDLGGKQVEIKKAE 444 + + + G+Q+EI+ A+ Sbjct: 67 ALHNLDRKWICGRQIEIQFAQ 87 Score = 43.5 bits (101), Expect = 3e-04 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 10/76 (13%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNID-----GRTVEVK-- 162 FG+YG I D + D +T+ PRGF +V F D + L HN+D GR +E++ Sbjct: 30 FGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL---HNLDRKWICGRQIEIQFA 86 Query: 163 ---RTVPREEMSSKDG 201 R P +M +K+G Sbjct: 87 QGDRKTP-NQMKAKEG 101
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 48.1 bits (113), Expect = 1e-05 Identities = 25/81 (30%), Positives = 40/81 (49%) Frame = +1 Query: 202 PKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVER 381 P +FV + +DLR F YG +V+ + +D T R RGF +V FE E Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66 Query: 382 VISEGRMRDLGGKQVEIKKAE 444 + + + G+Q+EI+ A+ Sbjct: 67 ALHNLDRKWICGRQIEIQFAQ 87 Score = 43.5 bits (101), Expect = 3e-04 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 10/76 (13%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNID-----GRTVEVK-- 162 FG+YG I D + D +T+ PRGF +V F D + L HN+D GR +E++ Sbjct: 30 FGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL---HNLDRKWICGRQIEIQFA 86 Query: 163 ---RTVPREEMSSKDG 201 R P +M +K+G Sbjct: 87 QGDRKTP-NQMKAKEG 101
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 48.1 bits (113), Expect = 1e-05 Identities = 27/93 (29%), Positives = 48/93 (51%) Frame = +1 Query: 163 RTVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGF 342 +T E SK PK ++ V +P + DLR F +G +++ +I+ + S+GF Sbjct: 107 QTQSSENSESKSTPK--RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGF 162 Query: 343 GFVTFESEDSVERVISEGRMRDLGGKQVEIKKA 441 GFVTFE+ +R + + G+++E+ A Sbjct: 163 GFVTFENSADADRAREKLHGTVVEGRKIEVNNA 195 Score = 38.9 bits (89), Expect = 0.008 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Frame = +1 Query: 4 FGKYGAITD-SVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVP 174 FG++G I D +I ++ +K GFGFVTF + + D+ E H ++GR +EV Sbjct: 141 FGQFGKILDVEIIFNERGSK---GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 197 Query: 175 REEMSSK 195 R + K Sbjct: 198 RVMTNKK 204
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 48.1 bits (113), Expect = 1e-05 Identities = 27/84 (32%), Positives = 48/84 (57%) Frame = +1 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 M + G K +IFV LP LT L++ FS G+V+ +I +++ G+S+G G V FES Sbjct: 505 MRDRLGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN--GKSKGCGTVRFES 562 Query: 364 EDSVERVISEGRMRDLGGKQVEIK 435 +S E+ + G++++++ Sbjct: 563 AESAEKACRIMNGIKISGREIDVR 586 Score = 43.5 bits (101), Expect = 3e-04 Identities = 21/82 (25%), Positives = 40/82 (48%) Frame = +1 Query: 193 KDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDS 372 K GP ++F+ +P + ++D V + + + G+SRG G V F+ E+ Sbjct: 85 KKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEF 144 Query: 373 VERVISEGRMRDLGGKQVEIKK 438 V++ + DL G+ + IK+ Sbjct: 145 VKKALETMNKYDLSGRPLNIKE 166 Score = 39.3 bits (90), Expect = 0.006 Identities = 50/202 (24%), Positives = 75/202 (37%), Gaps = 47/202 (23%) Frame = +1 Query: 10 KYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKR------ 165 K G +T + KD K RG G V F D + K LE +++++ GR + +K Sbjct: 114 KVGEVTYVELFKDAEGKS-RGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGEN 172 Query: 166 -----------------------------------TVPREEMSS-KDGPKTRKIFVGGLP 237 +P E +S+ + G IFV L Sbjct: 173 ARRALQRTGTSFQGSHASDVGSGLVNLPPSILNNPNIPPEVISNLQAGRLGSTIFVANLD 232 Query: 238 STLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGG 417 + L++ FS G V I D G+SRG G VTFE + IS + L Sbjct: 233 FKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMFNGQFLFD 291 Query: 418 KQVEIK---KAEPKKHGGDHSS 474 + + +K K+ P + H S Sbjct: 292 RPMHVKMDDKSVPHEDYRSHDS 313
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 48.1 bits (113), Expect = 1e-05 Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 5/157 (3%) Frame = +1 Query: 10 KYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPREE 183 K G +T ++ D K RG V F + K E ++H++ GR ++VK E Sbjct: 92 KVGEVTYVELLMDAEGKS-RGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEH 150 Query: 184 MS---SKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 K G +FV L + L++ FS G VV I+ D G+SRG G VT Sbjct: 151 ARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVT 209 Query: 355 FESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGD 465 FE + IS + L + + +K E GD Sbjct: 210 FEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGD 246 Score = 43.5 bits (101), Expect = 3e-04 Identities = 25/77 (32%), Positives = 42/77 (54%) Frame = +1 Query: 205 KTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERV 384 K +IFV LP T L+D F+ G+V+ I +++ G+S+G G V FES + ER Sbjct: 610 KACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERA 667 Query: 385 ISEGRMRDLGGKQVEIK 435 L G++++++ Sbjct: 668 CRMMNGMKLSGREIDVR 684 Score = 33.5 bits (75), Expect = 0.32 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Frame = +1 Query: 205 KTRKIFVGGLPSTLTEDDLRDHFSS-YGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVER 381 K + F+ +P + L+D G V ++++D + G+SRG V F+ E+S+++ Sbjct: 67 KRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMD-AEGKSRGCAVVEFKMEESMKK 125 Query: 382 VISEGRMRDLGGKQVEIKKAEPKKH 456 L G+ +++K+ +H Sbjct: 126 AAEVLNKHSLSGRPLKVKEDPDGEH 150
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 47.8 bits (112), Expect = 2e-05 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 10/102 (9%) Frame = +1 Query: 193 KDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDS 372 + G + +K++VG LP + E ++ D F YG + VD +GR F FV FE Sbjct: 3 RGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIK----YVDIKSGRGPAFAFVEFEDHRD 58 Query: 373 VERVISEGRMRDLGGKQVEIK----------KAEPKKHGGDH 468 E + + G+++ ++ P + GGDH Sbjct: 59 AEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDH 100 Score = 38.9 bits (89), Expect = 0.008 Identities = 50/194 (25%), Positives = 71/194 (36%), Gaps = 34/194 (17%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRG--FGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTV 171 F KYG I K K RG F FV F D + + D + DGR + V+ T Sbjct: 29 FHKYGRI------KYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR 82 Query: 172 ----------PREEMSSK--------------DGPKTR---KIFVGGLPSTLTEDDLRDH 270 P ++ GP+ R ++ V GLP T + DL+DH Sbjct: 83 GVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDH 142 Query: 271 FSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVE---RVISEGRMRDLGGKQVEIKKA 441 G+V + D G G V F + V+ R + + + R G+ I+ Sbjct: 143 MRDAGDVCYADVARD-------GTGVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRVR 195 Query: 442 EPKKHGGDHSSNGR 483 E GG GR Sbjct: 196 EDNSSGGGSGGGGR 209
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 47.8 bits (112), Expect = 2e-05 Identities = 24/77 (31%), Positives = 43/77 (55%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 K+F+GGL E L+ F +G + E ++ D T +SRGF F+TFE+ + + Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67 Query: 394 GRMRDLGGKQVEIKKAE 444 + L GK +++++A+ Sbjct: 68 MNGKSLHGKAIKVEQAK 84 Score = 39.3 bits (90), Expect = 0.006 Identities = 18/56 (32%), Positives = 38/56 (67%), Gaps = 2/56 (3%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEH--NIDGRTVEVKR 165 FGK+G I++ +++KD+ +K RGF F+TF +P+ +D + ++ G+ ++V++ Sbjct: 28 FGKHGPISEVLLIKDRTSKS-RGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 47.8 bits (112), Expect = 2e-05 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 14/158 (8%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPRE- 180 F KYG I + + +K++H +P F FV F DP + + + D ++ PR Sbjct: 35 FYKYGRIRE-IELKNRHGLVP--FAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTY 91 Query: 181 ------EMSSKDGPKTRK----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGR 330 +++GP TR+ + V GLP + + DL+DH G+V + D Sbjct: 92 GGRGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD----- 146 Query: 331 SRGFGFVTFESEDSVE---RVISEGRMRDLGGKQVEIK 435 G G V + ++ +E R + + + R G+ I+ Sbjct: 147 --GMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIR 182 Score = 42.0 bits (97), Expect = 9e-04 Identities = 29/90 (32%), Positives = 40/90 (44%) Frame = +1 Query: 193 KDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDS 372 + G +I+VG LPS + E DL D F YG + E ++ H F FV FE Sbjct: 9 RGGEGDGRIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGL---VPFAFVRFEDPRD 65 Query: 373 VERVISEGRMRDLGGKQVEIKKAEPKKHGG 462 E I D G Q ++ P+ +GG Sbjct: 66 AEDAIYGRNGYDYG--QCRLRVEFPRTYGG 93
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 47.4 bits (111), Expect = 2e-05 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHF-SSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISE 393 IFVG L +TE L + F + Y + +I+ D TG S+G+GFV F + D + +SE Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224 Query: 394 GRMRDLGGKQVEI-KKAEPKKHGGDHSSNGRSSHS 495 + L G+ +++ + ++H ++ RSS S Sbjct: 225 MQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSS 259 Score = 39.7 bits (91), Expect = 0.004 Identities = 22/63 (34%), Positives = 33/63 (52%) Frame = +1 Query: 202 PKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVER 381 P +F+GGL S +TED+LR +F +G +V +I V + GFV + S E Sbjct: 310 PNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPV------GKCCGFVQYVDRLSAEA 363 Query: 382 VIS 390 I+ Sbjct: 364 AIA 366
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 47.4 bits (111), Expect = 2e-05 Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 4/134 (2%) Frame = +1 Query: 58 KMPRGFGFVTFSDPSVID----KVLEDEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFV 225 K RGF F+ + D +++ + + G V+ P E+ + K + +FV Sbjct: 283 KKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFV 342 Query: 226 GGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMR 405 L +T+TE+ L FS +G + + + D + F+ F+ D + + E + Sbjct: 343 RNLANTVTEEILEKSFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEMNGK 394 Query: 406 DLGGKQVEIKKAEP 447 DL G+ +EI A+P Sbjct: 395 DLEGENIEIVFAKP 408 Score = 46.2 bits (108), Expect = 5e-05 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 3/142 (2%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKV--LEDEHNI-DGRTVEVKRTVP 174 F K G I D +M D T + RG+ FVTF + L + H I G+ + V +V Sbjct: 182 FEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV- 240 Query: 175 REEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 ++FVG +P + T++ + + FS + I+ + + GF Sbjct: 241 ----------ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCF 290 Query: 355 FESEDSVERVISEGRMRDLGGK 420 E ED + ++ R R + GK Sbjct: 291 LEYED--HKTAAQARRRLMSGK 310 Score = 45.8 bits (107), Expect = 6e-05 Identities = 21/58 (36%), Positives = 37/58 (63%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVI 387 +IFVG +P L ED+L F G + + ++M+D TG +RG+ FVTF ++++ + + Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 220
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 47.4 bits (111), Expect = 2e-05 Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 4/134 (2%) Frame = +1 Query: 58 KMPRGFGFVTFSDPSVID----KVLEDEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFV 225 K RGF F+ + D +++ + + G V+ P E+ + K + +FV Sbjct: 193 KKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFV 252 Query: 226 GGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMR 405 L +T+TE+ L FS +G + + + D + F+ F+ D + + E + Sbjct: 253 RNLANTVTEEILEKSFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEMNGK 304 Query: 406 DLGGKQVEIKKAEP 447 DL G+ +EI A+P Sbjct: 305 DLEGENIEIVFAKP 318 Score = 47.0 bits (110), Expect = 3e-05 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 2/105 (1%) Frame = +1 Query: 79 FVTFSDPSVIDKVLE--DEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSTLTE 252 F T D + KV E DE + G+ + P S + +IFVG +P L E Sbjct: 27 FQTLLDAGLPQKVAEKLDEIYVAGQR-KYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFE 85 Query: 253 DDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVI 387 D+L F G + + ++M+D TG +RG+ FVTF ++++ + + Sbjct: 86 DELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 130 Score = 46.2 bits (108), Expect = 5e-05 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 3/142 (2%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKV--LEDEHNI-DGRTVEVKRTVP 174 F K G I D +M D T + RG+ FVTF + L + H I G+ + V +V Sbjct: 92 FEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV- 150 Query: 175 REEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 ++FVG +P + T++ + + FS + I+ + + GF Sbjct: 151 ----------ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCF 200 Query: 355 FESEDSVERVISEGRMRDLGGK 420 E ED + ++ R R + GK Sbjct: 201 LEYED--HKTAAQARRRLMSGK 220
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 47.4 bits (111), Expect = 2e-05 Identities = 26/84 (30%), Positives = 48/84 (57%) Frame = +1 Query: 184 MSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFES 363 M + G K +IFV LP LT L++ FS G+V+ +I +++ G+S+G G V F+S Sbjct: 514 MRERIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN--GKSKGCGTVRFDS 571 Query: 364 EDSVERVISEGRMRDLGGKQVEIK 435 +S E+ + G++++++ Sbjct: 572 PESAEKACRIMNGIKISGREIDVR 595 Score = 43.5 bits (101), Expect = 3e-04 Identities = 21/82 (25%), Positives = 40/82 (48%) Frame = +1 Query: 193 KDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDS 372 K GP ++F+ +P + ++D V + + + G+SRG G V F+ E+ Sbjct: 94 KKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEF 153 Query: 373 VERVISEGRMRDLGGKQVEIKK 438 V++ + DL G+ + IK+ Sbjct: 154 VKKALETMNKYDLSGRPLNIKE 175 Score = 38.1 bits (87), Expect = 0.013 Identities = 44/171 (25%), Positives = 63/171 (36%), Gaps = 44/171 (25%) Frame = +1 Query: 10 KYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLE--DEHNIDGRTVEVKR------ 165 K G +T + KD K RG G V F D + K LE +++++ GR + +K Sbjct: 123 KVGEVTYVELFKDAEGKS-RGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGEN 181 Query: 166 -----------------------------------TVPREEMSS-KDGPKTRKIFVGGLP 237 +P E +S+ + G IFV L Sbjct: 182 ARRALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGRLGSTIFVANLD 241 Query: 238 STLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVIS 390 + L++ FS G V I D G+SRG G VTFE + IS Sbjct: 242 FKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAIS 291
>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic| region Length = 659 Score = 47.4 bits (111), Expect = 2e-05 Identities = 24/76 (31%), Positives = 41/76 (53%) Frame = +1 Query: 205 KTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERV 384 KT +F+G L ST+TE+ LR F Y + ++ D T +S G+G++ F+ ++ E Sbjct: 109 KTNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESA 168 Query: 385 ISEGRMRDLGGKQVEI 432 E G++V+I Sbjct: 169 RKEFNYTVFFGQEVKI 184 Score = 33.9 bits (76), Expect = 0.24 Identities = 15/62 (24%), Positives = 34/62 (54%) Frame = +1 Query: 196 DGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSV 375 D +++ I V LPS T++++ D+FS+ G + + + + FVT+++E+ Sbjct: 308 DNARSKTILVKNLPSDTTQEEVLDYFSTIGPI--KSVFISEKQANTPHKAFVTYKNEEES 365 Query: 376 ER 381 ++ Sbjct: 366 KK 367 Score = 32.7 bits (73), Expect = 0.54 Identities = 30/147 (20%), Positives = 66/147 (44%), Gaps = 6/147 (4%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEV----KR 165 F +Y + + + +D TK G+G++ F D + + ++ + G+ V++ K Sbjct: 131 FKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARKEFNYTVFFGQEVKIMPSMKN 190 Query: 166 TVPREEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFG 345 T+ R+ + + +F LP E+ S Y ++E+ ++ R + G Sbjct: 191 TLFRKNIGT-------NVFFSNLP---LENPQLTTRSFYLIMIEYGNVLSCLLERRKNIG 240 Query: 346 FVTFESEDSVERVISEGRMRDLGGKQV 426 FV F+++ S VI + ++ G ++ Sbjct: 241 FVYFDNDISARNVIKKYNNQEFFGNKI 267
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 47.0 bits (110), Expect = 3e-05 Identities = 25/79 (31%), Positives = 49/79 (62%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +FVGG+ + + E ++ F YG+V E +I+ + TG S+G+GFV+F ++ V++++ G Sbjct: 372 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV--G 428 Query: 397 RMRDLGGKQVEIKKAEPKK 453 GK++++ A K+ Sbjct: 429 SQIHFHGKKLKLGPAIRKQ 447 Score = 47.0 bits (110), Expect = 3e-05 Identities = 25/79 (31%), Positives = 49/79 (62%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +FVGG+ + + E ++ F YG+V E +I+ + TG S+G+GFV+F ++ V++++ G Sbjct: 207 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV--G 263 Query: 397 RMRDLGGKQVEIKKAEPKK 453 GK++++ A K+ Sbjct: 264 SQIHFHGKKLKLGPAIRKQ 282 Score = 47.0 bits (110), Expect = 3e-05 Identities = 25/79 (31%), Positives = 49/79 (62%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +FVGG+ + + E ++ F YG+V E +I+ + TG S+G+GFV+F ++ V++++ G Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV--G 98 Query: 397 RMRDLGGKQVEIKKAEPKK 453 GK++++ A K+ Sbjct: 99 SQIHFHGKKLKLGPAIRKQ 117
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 47.0 bits (110), Expect = 3e-05 Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 14/158 (8%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPRE- 180 F KYG I + + +K++H +P F FV F DP + + + D ++ PR Sbjct: 34 FYKYGRIRE-IELKNRHGLVP--FAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTY 90 Query: 181 ------EMSSKDGPKTRK----IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGR 330 ++GP TR+ + V GLP + + DL+DH G+V + D Sbjct: 91 GGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD----- 145 Query: 331 SRGFGFVTFESEDSVE---RVISEGRMRDLGGKQVEIK 435 G G V + ++ +E R + + + R G+ I+ Sbjct: 146 --GVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIR 181 Score = 40.8 bits (94), Expect = 0.002 Identities = 28/90 (31%), Positives = 40/90 (44%) Frame = +1 Query: 193 KDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDS 372 + G +I+VG LP+ + E DL D F YG + E ++ H F FV FE Sbjct: 8 RGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGL---VPFAFVRFEDPRD 64 Query: 373 VERVISEGRMRDLGGKQVEIKKAEPKKHGG 462 E I D G Q ++ P+ +GG Sbjct: 65 AEDAIYGRNGYDYG--QCRLRVEFPRTYGG 92
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 47.0 bits (110), Expect = 3e-05 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 4/134 (2%) Frame = +1 Query: 58 KMPRGFGFVTFSDPSVID----KVLEDEHNIDGRTVEVKRTVPREEMSSKDGPKTRKIFV 225 K RGF F+ + D +++ + + G V+ P E+ + K + +FV Sbjct: 283 KKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFV 342 Query: 226 GGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMR 405 L +T+TE+ L FS +G + + + D++ F+ F+ D + + E + Sbjct: 343 RNLANTVTEEILEKAFSQFGKLERVKKLKDYA--------FIHFDERDGAVKAMEEMNGK 394 Query: 406 DLGGKQVEIKKAEP 447 DL G+ +EI A+P Sbjct: 395 DLEGENIEIVFAKP 408 Score = 46.2 bits (108), Expect = 5e-05 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 3/142 (2%) Frame = +1 Query: 4 FGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKV--LEDEHNI-DGRTVEVKRTVP 174 F K G I D +M D T + RG+ FVTF + L + H I G+ + V +V Sbjct: 182 FEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV- 240 Query: 175 REEMSSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVT 354 ++FVG +P + T++ + + FS + I+ + + GF Sbjct: 241 ----------ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCF 290 Query: 355 FESEDSVERVISEGRMRDLGGK 420 E ED + ++ R R + GK Sbjct: 291 LEYED--HKTAAQARRRLMSGK 310 Score = 45.8 bits (107), Expect = 6e-05 Identities = 21/58 (36%), Positives = 37/58 (63%) Frame = +1 Query: 214 KIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVI 387 +IFVG +P L ED+L F G + + ++M+D TG +RG+ FVTF ++++ + + Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 220
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 47.0 bits (110), Expect = 3e-05 Identities = 28/90 (31%), Positives = 45/90 (50%) Frame = +1 Query: 187 SSKDGPKTRKIFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESE 366 S DGPK ++ V +P + DL+ F +G V + +I+ + S+GFGFVT E Sbjct: 147 SGPDGPK--RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERP 202 Query: 367 DSVERVISEGRMRDLGGKQVEIKKAEPKKH 456 ER E + G+++E+ A + H Sbjct: 203 QDAERARQELHGSMIEGRKIEVNCATARVH 232 Score = 34.7 bits (78), Expect = 0.14 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Frame = +1 Query: 4 FGKYGAITD-SVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDEHN--IDGRTVEVKRTVP 174 F K+G ++D +I ++ +K GFGFVT P ++ ++ H I+GR +EV Sbjct: 173 FEKFGVVSDVEIIFNERGSK---GFGFVTMERPQDAERARQELHGSMIEGRKIEVNCATA 229 Query: 175 R 177 R Sbjct: 230 R 230
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 47.0 bits (110), Expect = 3e-05 Identities = 25/79 (31%), Positives = 49/79 (62%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +FVGG+ + + E ++ F YG+V E +I+ + TG S+G+GFV+F ++ V++++ G Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV--G 98 Query: 397 RMRDLGGKQVEIKKAEPKK 453 GK++++ A K+ Sbjct: 99 SQIHFHGKKLKLGPAIRKQ 117
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 47.0 bits (110), Expect = 3e-05 Identities = 25/79 (31%), Positives = 49/79 (62%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +FVGG+ + + E ++ F YG+V E +I+ + TG S+G+GFV+F ++ V++++ G Sbjct: 207 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV--G 263 Query: 397 RMRDLGGKQVEIKKAEPKK 453 GK++++ A K+ Sbjct: 264 SQIHFHGKKLKLGPAIRKQ 282 Score = 47.0 bits (110), Expect = 3e-05 Identities = 25/79 (31%), Positives = 49/79 (62%) Frame = +1 Query: 217 IFVGGLPSTLTEDDLRDHFSSYGNVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 396 +FVGG+ + + E ++ F YG+V E +I+ + TG S+G+GFV+F ++ V++++ G Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV--G 98 Query: 397 RMRDLGGKQVEIKKAEPKK 453 GK++++ A K+ Sbjct: 99 SQIHFHGKKLKLGPAIRKQ 117 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,692,011 Number of Sequences: 219361 Number of extensions: 1666423 Number of successful extensions: 4671 Number of sequences better than 10.0: 451 Number of HSP's better than 10.0 without gapping: 3792 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4340 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
