ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26o24 |
|---|---|
| Clone Library Name | barley_pub |
>POP2_YEAST (P39008) Protein POP2 (CCR4-associated factor 1)| Length = 433 Score = 126 bits (317), Expect = 4e-29 Identities = 60/119 (50%), Positives = 87/119 (73%) Frame = +2 Query: 242 IREVWATNLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEYNYATLKANVDM 421 +R+VW +NL +EFAVIR +V Y+++++ TEF G + RP+G+FRS +Y+Y T++ANVD Sbjct: 160 VRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDF 219 Query: 422 LSLIQLGLTLSDENGALPARGTGGRPCAWQFNFRGFDPRSDPANADSIDLLRNSGIDFD 598 L+ IQLGL+LSD NG P G P WQFNF FDP+ + + +S++LLR SGI+F+ Sbjct: 220 LNPIQLGLSLSDANGNKPDNG----PSTWQFNFE-FDPKKEIMSTESLELLRKSGINFE 273
>CNOT8_MOUSE (Q9D8X5) CCR4-NOT transcription complex subunit 8 (CCR4-associated| factor 8) Length = 292 Score = 124 bits (311), Expect = 2e-28 Identities = 65/123 (52%), Positives = 82/123 (66%) Frame = +2 Query: 227 EEGVEIREVWATNLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEYNYATLK 406 E I EVWA+NLE E IR++V YSYIAMDTEFPG+V RP+G FRS+ +Y Y L+ Sbjct: 7 ENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLR 66 Query: 407 ANVDMLSLIQLGLTLSDENGALPARGTGGRPCAWQFNFRGFDPRSDPANADSIDLLRNSG 586 NVD+L +IQLGLT ++E G P+ WQFNF+ F+ D + DSIDLL NSG Sbjct: 67 CNVDLLKIIQLGLTFTNEKGEYPSGIN-----TWQFNFK-FNLTEDMYSQDSIDLLANSG 120 Query: 587 IDF 595 + F Sbjct: 121 LQF 123
>CNOT8_HUMAN (Q9UFF9) CCR4-NOT transcription complex subunit 8 (CCR4-associated| factor 8) (CAF1-like protein) (CALIFp) (CAF2) Length = 292 Score = 124 bits (311), Expect = 2e-28 Identities = 65/123 (52%), Positives = 82/123 (66%) Frame = +2 Query: 227 EEGVEIREVWATNLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEYNYATLK 406 E I EVWA+NLE E IR++V YSYIAMDTEFPG+V RP+G FRS+ +Y Y L+ Sbjct: 7 ENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLR 66 Query: 407 ANVDMLSLIQLGLTLSDENGALPARGTGGRPCAWQFNFRGFDPRSDPANADSIDLLRNSG 586 NVD+L +IQLGLT ++E G P+ WQFNF+ F+ D + DSIDLL NSG Sbjct: 67 CNVDLLKIIQLGLTFTNEKGEYPSGIN-----TWQFNFK-FNLTEDMYSQDSIDLLANSG 120 Query: 587 IDF 595 + F Sbjct: 121 LQF 123
>CNOT7_MOUSE (Q60809) CCR4-NOT transcription complex subunit 7 (CCR4-associated| factor 1) (CAF1) Length = 285 Score = 119 bits (298), Expect = 7e-27 Identities = 63/118 (53%), Positives = 77/118 (65%) Frame = +2 Query: 242 IREVWATNLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEYNYATLKANVDM 421 I EVWA NL+ E IR V+ Y+Y+AMDTEFPG+V RP+G FRSN +Y Y L+ NVD+ Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 71 Query: 422 LSLIQLGLTLSDENGALPARGTGGRPCAWQFNFRGFDPRSDPANADSIDLLRNSGIDF 595 L +IQLGLT +E G P GT WQFNF+ F+ D DSI+LL SGI F Sbjct: 72 LKIIQLGLTFMNEQGEYPP-GTS----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
>CNOT7_HUMAN (Q9UIV1) CCR4-NOT transcription complex subunit 7 (CCR4-associated| factor 1) (CAF1) (BTG1-binding factor 1) Length = 285 Score = 119 bits (298), Expect = 7e-27 Identities = 63/118 (53%), Positives = 77/118 (65%) Frame = +2 Query: 242 IREVWATNLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEYNYATLKANVDM 421 I EVWA NL+ E IR V+ Y+Y+AMDTEFPG+V RP+G FRSN +Y Y L+ NVD+ Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 71 Query: 422 LSLIQLGLTLSDENGALPARGTGGRPCAWQFNFRGFDPRSDPANADSIDLLRNSGIDF 595 L +IQLGLT +E G P GT WQFNF+ F+ D DSI+LL SGI F Sbjct: 72 LKIIQLGLTFMNEQGEYPP-GTS----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
>CNOT7_CAEEL (Q17345) CCR4-NOT transcription complex subunit 7 (CCR4-associated| factor 1) (CAF1) Length = 310 Score = 113 bits (283), Expect = 4e-25 Identities = 57/120 (47%), Positives = 79/120 (65%) Frame = +2 Query: 236 VEIREVWATNLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEYNYATLKANV 415 V+I V+ +N+E EFA IR V DY Y+AMDTEFPG+V PLG+FRS +++NY + NV Sbjct: 21 VKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKEDFNYQQVFCNV 80 Query: 416 DMLSLIQLGLTLSDENGALPARGTGGRPCAWQFNFRGFDPRSDPANADSIDLLRNSGIDF 595 +ML LIQ+G + ++ G LP G WQFNF F D + +S+++LR +GIDF Sbjct: 81 NMLKLIQVGFAMVNDKGELPPTGD-----VWQFNF-NFSFAEDMFSHESVEMLRQAGIDF 134
>PARN_XENLA (Q90ZA1) Poly(A)-specific ribonuclease PARN (EC 3.1.13.4)| (Polyadenylate-specific ribonuclease) (Deadenylating nuclease) (Deadenylation nuclease) (parn-A) Length = 631 Score = 33.9 bits (76), Expect = 0.36 Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 13/130 (10%) Frame = +2 Query: 248 EVWATNLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSND----EYNYATLKANV 415 E+ +N + + + + ++A+D EF GI P S +N E Y LK + Sbjct: 2 EITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKHS 61 Query: 416 DMLSLIQLGL-TLSDENGALPARGTGGRPCAWQFNFRGFDP---RSDP-----ANADSID 568 L Q GL T + +N T + FNF F R+ P + SID Sbjct: 62 MEFLLFQFGLCTFNYDN-------TEAKYLMKSFNFYIFPKPFNRNSPDKKFVCQSSSID 114 Query: 569 LLRNSGIDFD 598 L N G DF+ Sbjct: 115 FLANQGFDFN 124
>OPSD_POERE (P79848) Rhodopsin| Length = 354 Score = 31.2 bits (69), Expect = 2.4 Identities = 13/42 (30%), Positives = 25/42 (59%) Frame = +2 Query: 263 NLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEY 388 NLE FA + +G +S + + E +VC+P+ +FR ++ + Sbjct: 111 NLEGYFATLGGEIGLWSLVVLAVERWLVVCKPISNFRFSENH 152
>OPSD_RAT (P51489) Rhodopsin| Length = 348 Score = 30.8 bits (68), Expect = 3.1 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +2 Query: 263 NLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEY 388 NLE FA + +G +S + + E +VC+P+ +FR + + Sbjct: 111 NLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSNFRFGENH 152
>OPSD_SOLSO (Q9YGZ5) Rhodopsin| Length = 353 Score = 30.8 bits (68), Expect = 3.1 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +2 Query: 263 NLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEY 388 NLE FA + +G +S + + E +VC+P+ +FR + + Sbjct: 111 NLEGFFATLGGEIGLWSLVVLAVERWMVVCKPISNFRFTENH 152
>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)| (Trinucleotide repeat-containing gene 13 protein) Length = 1312 Score = 30.8 bits (68), Expect = 3.1 Identities = 15/29 (51%), Positives = 15/29 (51%) Frame = -3 Query: 422 ACRRWP*GWRSCTRHWSESSRAGGTRCPG 336 A RWP GWRS R S R GG PG Sbjct: 21 AAARWP-GWRSLQRPARRSGRGGGGAAPG 48
>TRPB_THETN (Q8R9M9) Tryptophan synthase beta chain (EC 4.2.1.20)| Length = 391 Score = 30.8 bits (68), Expect = 3.1 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 Query: 254 WATNLEAEFAVIRDVVGDYSYIAMDTEFPGIV 349 W TN+E F VI VVG + Y M +F ++ Sbjct: 174 WVTNIETTFYVIGSVVGPHPYPTMVRDFQRVI 205
>OPSD_GAMAF (P79756) Rhodopsin| Length = 354 Score = 30.8 bits (68), Expect = 3.1 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +2 Query: 263 NLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEY 388 NLE FA + +G +S + + E +VC+P+ +FR + + Sbjct: 111 NLEGYFATLGGEIGLWSLVVLAVERWLVVCKPISNFRFTENH 152
>OPSD_TETNG (Q9DGG4) Rhodopsin| Length = 353 Score = 30.4 bits (67), Expect = 4.0 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +2 Query: 263 NLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEY 388 NLE FA + +G +S + + E +VC+P+ +FR + + Sbjct: 111 NLEGFFATLGGEIGLWSLVVLAIERWMVVCKPISNFRFGENH 152
>OPSD_SALPV (Q9YGZ3) Rhodopsin| Length = 354 Score = 30.4 bits (67), Expect = 4.0 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +2 Query: 263 NLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEY 388 NLE FA + +G +S + + E +VC+P+ +FR + + Sbjct: 111 NLEGFFATLGGEIGLWSLVVLAIERWVVVCKPISNFRFGENH 152
>OPSD_ORYLA (P87369) Rhodopsin (KFH-RH)| Length = 354 Score = 30.4 bits (67), Expect = 4.0 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +2 Query: 263 NLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEY 388 NLE FA + +G +S + + E +VC+P+ +FR + + Sbjct: 111 NLEGFFATLGGEIGLWSLVVLAIERWVVVCKPISNFRFGENH 152
>TRPB_DEIRA (Q9RVT1) Tryptophan synthase beta chain (EC 4.2.1.20)| Length = 431 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 224 DEEGVEIREVWATNLEAEFAVIRDVVGDYSYIAMDTEFPGIV 349 D IRE W TN+ F ++ VVG + Y AM +F ++ Sbjct: 190 DATNEAIRE-WVTNVRDTFYILGSVVGPHPYPAMVRDFQSVI 230
>OPSD_ABYKO (O42294) Rhodopsin (Fragment)| Length = 289 Score = 30.0 bits (66), Expect = 5.3 Identities = 13/42 (30%), Positives = 25/42 (59%) Frame = +2 Query: 263 NLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEY 388 NLEA FA + + +S + + E +VC+P+ +FR +++ Sbjct: 82 NLEAFFATLGGEIALWSLVVLAIERWIVVCKPISNFRFTEDH 123
>OPSD_TAUBU (O42466) Rhodopsin (Fragment)| Length = 287 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = +2 Query: 263 NLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEYNYATLKANVDMLS 427 N+E FA + + +S + + E +VC+P+ +FR +E+ L N M S Sbjct: 80 NVEGFFATLGGEIALWSLVVLAVERWIVVCKPISNFRFTEEHAIMGLGFNWVMAS 134
>OPSD_DICLA (Q9YGZ4) Rhodopsin| Length = 353 Score = 29.6 bits (65), Expect = 6.9 Identities = 12/42 (28%), Positives = 24/42 (57%) Frame = +2 Query: 263 NLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEY 388 N+E FA + +G +S + + E +VC+P+ +FR + + Sbjct: 111 NMEGFFATLGGEIGLWSLVVLAVERWLVVCKPISNFRFGENH 152
>OPSD_SCYCA (O93459) Rhodopsin| Length = 354 Score = 29.6 bits (65), Expect = 6.9 Identities = 12/44 (27%), Positives = 24/44 (54%) Frame = +2 Query: 263 NLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEYNY 394 N E FA + +G +S + + E +VC+P+ +FR ++ + Sbjct: 111 NFEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSNFRFGSQHAF 154
>MMP15_HUMAN (P51511) Matrix metalloproteinase-15 precursor (EC 3.4.24.-)| (MMP-15) (Membrane-type matrix metalloproteinase 2) (MT-MMP 2) (MTMMP2) (Membrane-type-2 matrix metalloproteinase) (MT2-MMP) (MT2MMP) (SMCP-2) Length = 669 Score = 25.4 bits (54), Expect(2) = 8.5 Identities = 14/35 (40%), Positives = 15/35 (42%) Frame = +1 Query: 391 LRHPQGQRRHAEPHPAWSHSLRRERRTPCQGHGGA 495 LR G + H EP P W R P HGGA Sbjct: 553 LRDFMGCQEHVEPGPRWPD----VARPPFNPHGGA 583 Score = 22.3 bits (46), Expect(2) = 8.5 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Frame = +2 Query: 302 GDYSYIAMDTEFPGIVCRPLGSFRSND-EYNY 394 GD Y + + GI P G+F SND Y Y Sbjct: 496 GDPGYPKPISVWQGIPASPKGAFLSNDAAYTY 527
>PCP_STRCO (Q9RL48) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)| (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) Length = 216 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -2 Query: 486 VPLAGSAPFSSERVRPSWMRLSM 418 V + G APF ERV PSW S+ Sbjct: 4 VLITGFAPFGGERVNPSWQAASL 26
>OPSD_LIZAU (Q9YGZ6) Rhodopsin| Length = 353 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/42 (28%), Positives = 24/42 (57%) Frame = +2 Query: 263 NLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEY 388 NLE FA + + +S + + E +VC+P+ +FR +++ Sbjct: 111 NLEGFFATLGGEIALWSLVVLAVERWMVVCKPISNFRFGEDH 152
>TRPB_PSEPU (P11080) Tryptophan synthase beta chain (EC 4.2.1.20)| Length = 405 Score = 29.3 bits (64), Expect = 9.0 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 Query: 254 WATNLEAEFAVIRDVVGDYSYIAMDTEFPGIV 349 W TN+E F +I V G + Y AM +F I+ Sbjct: 185 WVTNVEDTFYLIGTVAGPHPYPAMVRDFQSII 216
>TRPB_PSEPK (Q88RP6) Tryptophan synthase beta chain (EC 4.2.1.20)| Length = 405 Score = 29.3 bits (64), Expect = 9.0 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 Query: 254 WATNLEAEFAVIRDVVGDYSYIAMDTEFPGIV 349 W TN+E F +I V G + Y AM +F I+ Sbjct: 185 WVTNVEDTFYLIGTVAGPHPYPAMVRDFQSII 216
>BPHB_PSES1 (P50206) Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC| 1.3.1.56) (Biphenyl-2,3-dihydro-2,3-diol dehydrogenase) (2,3-dihydro-2,3-dihydroxybiphenyl dehydrogenase) (Biphenyl-cis-diol dehydrogenase) (2,3-dihydroxy-4-phenylhexa-4,6-diene dehyd Length = 276 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = -1 Query: 358 RAAHDARELGVHSDVRVIAD 299 +AAH A+ LG+ DVRV+AD Sbjct: 46 QAAHGAKVLGIEGDVRVLAD 65
>RL10_PSESM (Q889Y0) 50S ribosomal protein L10| Length = 166 Score = 29.3 bits (64), Expect = 9.0 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 8/94 (8%) Frame = +2 Query: 215 KPVDEEGVEIREVWATNL-----EAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSF-RS 376 K E GV +R V T L + EF+V+ DV + IA E PG R F + Sbjct: 43 KEAREAGVYVRVVRNTLLKRAVADTEFSVLNDVFTGPTLIAFSNEHPGAAARLFKEFAKG 102 Query: 377 NDEYNYATLKANVDMLSLIQLGL--TLSDENGAL 472 D++ L+ Q+ + TL N A+ Sbjct: 103 QDKFEIKAAAFEGKFLAANQIDVLATLPTRNEAI 136
>OPSD_BRARE (P35359) Rhodopsin| Length = 354 Score = 29.3 bits (64), Expect = 9.0 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +2 Query: 263 NLEAEFAVIRDVVGDYSYIAMDTEFPGIVCRPLGSFRSNDEY 388 NLE FA + +G +S + + E +VC+P+ +FR + + Sbjct: 111 NLEGFFATLGGEMGLWSLVVLAIERWMVVCKPVSNFRFGENH 152 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,108,808 Number of Sequences: 219361 Number of extensions: 1353084 Number of successful extensions: 5235 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 5014 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5223 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
