ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26o24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009199.1| Triticum aestivum clone wle1n.pk0005.d9:fis, full insert mRNA sequence Length = 1182 Score = 819 bits (413), Expect = 0.0 Identities = 546/592 (92%), Gaps = 8/592 (1%) Strand = Plus / Plus Query: 13 gcgctgacctgtggccccctgctcccgcctccctgtcctcctgttattactttccccacc 72 |||||||||||||| |||||||| | ||||||| ||||| | |||||||||||| |||| Sbjct: 45 gcgctgacctgtgggcccctgcttctgcctccccttcctcatcttattactttcctcacc 104 Query: 73 acgccgatctgccggactgtttcgcaaaccctaaccctagcaagcccgcttcactcctcc 132 ||||||||| ||||| ||| ||||||||||||||||||| || ||||||| ||||||| Sbjct: 105 acgccgatccgccggtttgtctcgcaaaccctaaccctag--agtccgcttcgctcctcc 162 Query: 133 ------aacaagatctctctccgaatctatggatgcaccagctccgatgtctgccccacc 186 |||||||||||||||| ||||| |||||||||| |||||||||||||||||||| Sbjct: 163 tcccccaacaagatctctctcctaatctttggatgcaccggctccgatgtctgccccacc 222 Query: 187 gccccccgcctcgtccgatgatgatgctaagcccgtcgacgaggagggcgtagagatccg 246 ||||||||||| ||||| ||||||| |||||||| |||||||||||||||||||||||| Sbjct: 223 accccccgcctcctccgacgatgatggtaagcccgccgacgaggagggcgtagagatccg 282 Query: 247 cgaggtatgggcgacgaacctcgaggcggagttcgccgtgatccgtgacgtcgtcggcga 306 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 283 cgaggtatgggcgaacaacctcgaggcggagttcgccgtgatccgtgacgtcgtcgacga 342 Query: 307 ttactcgtacatcgctatggacaccgagttcccgggcatcgtgtgccgcccgctcgggag 366 |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 343 ttacccgtacatcgccatggacaccgagttcccgggcatcgtgtgccgcccgctcgggag 402 Query: 367 ctttcgctccaatgacgagtacaactacgccaccctcaaggccaacgtcgacatgctgag 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 403 ctttcgctccaatgacgagtacaactacgccaccctcaaggccaacgtcgacatgctgag 462 Query: 427 cctcatccagcttggtctcactctctccgacgagaacggcgcactccctgccaggggcac 486 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 463 cctcatccagcttggtctcaccctctccgacgagaacggcgcactcccggccaggggcac 522 Query: 487 nnnnnnncgcccctgcgcctggcagttcaactttcggggcttcgatccgcgctcagaccc 546 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 523 gggggggcgcccctgcgcctggcagttcaactttcggggcttcgatccgcgctcagaccc 582 Query: 547 cgccaacgccgactccatcgacctgctacgcaacagtgggatcgacttcgac 598 ||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 583 cgccaacgctgactccatcgacctgctacgcaacagcgggatcgacttcgac 634
>ref|XM_507586.1| PREDICTED Oryza sativa (japonica cultivar-group), P0524F03.33 mRNA Length = 1259 Score = 165 bits (83), Expect = 2e-37 Identities = 194/231 (83%) Strand = Plus / Plus Query: 230 gagggcgtagagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatc 289 |||||||| |||||||| |||||||||||| |||||| ||||||||| |||| | |||| Sbjct: 221 gagggcgtggagatccgggaggtatgggcggggaacctggaggcggagatcgcggcgatc 280 Query: 290 cgtgacgtcgtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtg 349 || |||| |||| | ||| ||||| |||| |||||||| |||||||||||||||||| Sbjct: 281 cgcgacgaggtcgaccggtacccgtacgtcgccatggacacggagttcccgggcatcgtg 340 Query: 350 tgccgcccgctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggcc 409 |||||||| |||| | ||| ||| ||| ||||||| ||||||||||| |||| ||||| Sbjct: 341 tgccgccccgtcggcaacttccgcaccaccgacgagttcaactacgccaacctcgaggcc 400 Query: 410 aacgtcgacatgctgagcctcatccagcttggtctcactctctccgacgag 460 |||||| ||||||| | ||||||||||| || ||||| |||||||||||| Sbjct: 401 aacgtcaacatgctcaagctcatccagctcggcctcaccctctccgacgag 451 Score = 42.1 bits (21), Expect = 2.1 Identities = 75/93 (80%) Strand = Plus / Plus Query: 505 ctggcagttcaactttcggggcttcgatccgcgctcagaccccgccaacgccgactccat 564 ||||||||||||||| || || ||||| || || | ||||| |||||||||||||||| Sbjct: 496 ctggcagttcaacttccgcgggttcgacccccggaccgacccgtccaacgccgactccat 555 Query: 565 cgacctgctacgcaacagtgggatcgacttcga 597 | | |||| |||| | | || ||||||||||| Sbjct: 556 ccagatgctccgcacctgcggcatcgacttcga 588
>ref|XM_482612.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1199 Score = 165 bits (83), Expect = 2e-37 Identities = 194/231 (83%) Strand = Plus / Plus Query: 230 gagggcgtagagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatc 289 |||||||| |||||||| |||||||||||| |||||| ||||||||| |||| | |||| Sbjct: 312 gagggcgtggagatccgggaggtatgggcggggaacctggaggcggagatcgcggcgatc 371 Query: 290 cgtgacgtcgtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtg 349 || |||| |||| | ||| ||||| |||| |||||||| |||||||||||||||||| Sbjct: 372 cgcgacgaggtcgaccggtacccgtacgtcgccatggacacggagttcccgggcatcgtg 431 Query: 350 tgccgcccgctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggcc 409 |||||||| |||| | ||| ||| ||| ||||||| ||||||||||| |||| ||||| Sbjct: 432 tgccgccccgtcggcaacttccgcaccaccgacgagttcaactacgccaacctcgaggcc 491 Query: 410 aacgtcgacatgctgagcctcatccagcttggtctcactctctccgacgag 460 |||||| ||||||| | ||||||||||| || ||||| |||||||||||| Sbjct: 492 aacgtcaacatgctcaagctcatccagctcggcctcaccctctccgacgag 542 Score = 42.1 bits (21), Expect = 2.1 Identities = 51/61 (83%) Strand = Plus / Plus Query: 505 ctggcagttcaactttcggggcttcgatccgcgctcagaccccgccaacgccgactccat 564 ||||||||||||||| || || ||||| || || | ||||| |||||||||||||||| Sbjct: 587 ctggcagttcaacttccgcgggttcgacccccggaccgacccgtccaacgccgactccat 646 Query: 565 c 565 | Sbjct: 647 c 647
>ref|XM_507242.2| PREDICTED Oryza sativa (japonica cultivar-group), P0524F03.33 mRNA Length = 1222 Score = 165 bits (83), Expect = 2e-37 Identities = 194/231 (83%) Strand = Plus / Plus Query: 230 gagggcgtagagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatc 289 |||||||| |||||||| |||||||||||| |||||| ||||||||| |||| | |||| Sbjct: 332 gagggcgtggagatccgggaggtatgggcggggaacctggaggcggagatcgcggcgatc 391 Query: 290 cgtgacgtcgtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtg 349 || |||| |||| | ||| ||||| |||| |||||||| |||||||||||||||||| Sbjct: 392 cgcgacgaggtcgaccggtacccgtacgtcgccatggacacggagttcccgggcatcgtg 451 Query: 350 tgccgcccgctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggcc 409 |||||||| |||| | ||| ||| ||| ||||||| ||||||||||| |||| ||||| Sbjct: 452 tgccgccccgtcggcaacttccgcaccaccgacgagttcaactacgccaacctcgaggcc 511 Query: 410 aacgtcgacatgctgagcctcatccagcttggtctcactctctccgacgag 460 |||||| ||||||| | ||||||||||| || ||||| |||||||||||| Sbjct: 512 aacgtcaacatgctcaagctcatccagctcggcctcaccctctccgacgag 562 Score = 42.1 bits (21), Expect = 2.1 Identities = 51/61 (83%) Strand = Plus / Plus Query: 505 ctggcagttcaactttcggggcttcgatccgcgctcagaccccgccaacgccgactccat 564 ||||||||||||||| || || ||||| || || | ||||| |||||||||||||||| Sbjct: 607 ctggcagttcaacttccgcgggttcgacccccggaccgacccgtccaacgccgactccat 666 Query: 565 c 565 | Sbjct: 667 c 667
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 165 bits (83), Expect = 2e-37 Identities = 194/231 (83%) Strand = Plus / Plus Query: 230 gagggcgtagagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatc 289 |||||||| |||||||| |||||||||||| |||||| ||||||||| |||| | |||| Sbjct: 21411838 gagggcgtggagatccgggaggtatgggcggggaacctggaggcggagatcgcggcgatc 21411897 Query: 290 cgtgacgtcgtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtg 349 || |||| |||| | ||| ||||| |||| |||||||| |||||||||||||||||| Sbjct: 21411898 cgcgacgaggtcgaccggtacccgtacgtcgccatggacacggagttcccgggcatcgtg 21411957 Query: 350 tgccgcccgctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggcc 409 |||||||| |||| | ||| ||| ||| ||||||| ||||||||||| |||| ||||| Sbjct: 21411958 tgccgccccgtcggcaacttccgcaccaccgacgagttcaactacgccaacctcgaggcc 21412017 Query: 410 aacgtcgacatgctgagcctcatccagcttggtctcactctctccgacgag 460 |||||| ||||||| | ||||||||||| || ||||| |||||||||||| Sbjct: 21412018 aacgtcaacatgctcaagctcatccagctcggcctcaccctctccgacgag 21412068 Score = 42.1 bits (21), Expect = 2.1 Identities = 51/61 (83%) Strand = Plus / Plus Query: 505 ctggcagttcaactttcggggcttcgatccgcgctcagaccccgccaacgccgactccat 564 ||||||||||||||| || || ||||| || || | ||||| |||||||||||||||| Sbjct: 21412113 ctggcagttcaacttccgcgggttcgacccccggaccgacccgtccaacgccgactccat 21412172 Query: 565 c 565 | Sbjct: 21412173 c 21412173
>dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0528B09 Length = 156897 Score = 165 bits (83), Expect = 2e-37 Identities = 194/231 (83%) Strand = Plus / Plus Query: 230 gagggcgtagagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatc 289 |||||||| |||||||| |||||||||||| |||||| ||||||||| |||| | |||| Sbjct: 15833 gagggcgtggagatccgggaggtatgggcggggaacctggaggcggagatcgcggcgatc 15892 Query: 290 cgtgacgtcgtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtg 349 || |||| |||| | ||| ||||| |||| |||||||| |||||||||||||||||| Sbjct: 15893 cgcgacgaggtcgaccggtacccgtacgtcgccatggacacggagttcccgggcatcgtg 15952 Query: 350 tgccgcccgctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggcc 409 |||||||| |||| | ||| ||| ||| ||||||| ||||||||||| |||| ||||| Sbjct: 15953 tgccgccccgtcggcaacttccgcaccaccgacgagttcaactacgccaacctcgaggcc 16012 Query: 410 aacgtcgacatgctgagcctcatccagcttggtctcactctctccgacgag 460 |||||| ||||||| | ||||||||||| || ||||| |||||||||||| Sbjct: 16013 aacgtcaacatgctcaagctcatccagctcggcctcaccctctccgacgag 16063 Score = 42.1 bits (21), Expect = 2.1 Identities = 75/93 (80%) Strand = Plus / Plus Query: 505 ctggcagttcaactttcggggcttcgatccgcgctcagaccccgccaacgccgactccat 564 ||||||||||||||| || || ||||| || || | ||||| |||||||||||||||| Sbjct: 16108 ctggcagttcaacttccgcgggttcgacccccggaccgacccgtccaacgccgactccat 16167 Query: 565 cgacctgctacgcaacagtgggatcgacttcga 597 | | |||| |||| | | || ||||||||||| Sbjct: 16168 ccagatgctccgcacctgcggcatcgacttcga 16200
>dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0524F03 Length = 167696 Score = 165 bits (83), Expect = 2e-37 Identities = 194/231 (83%) Strand = Plus / Plus Query: 230 gagggcgtagagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatc 289 |||||||| |||||||| |||||||||||| |||||| ||||||||| |||| | |||| Sbjct: 111763 gagggcgtggagatccgggaggtatgggcggggaacctggaggcggagatcgcggcgatc 111822 Query: 290 cgtgacgtcgtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtg 349 || |||| |||| | ||| ||||| |||| |||||||| |||||||||||||||||| Sbjct: 111823 cgcgacgaggtcgaccggtacccgtacgtcgccatggacacggagttcccgggcatcgtg 111882 Query: 350 tgccgcccgctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggcc 409 |||||||| |||| | ||| ||| ||| ||||||| ||||||||||| |||| ||||| Sbjct: 111883 tgccgccccgtcggcaacttccgcaccaccgacgagttcaactacgccaacctcgaggcc 111942 Query: 410 aacgtcgacatgctgagcctcatccagcttggtctcactctctccgacgag 460 |||||| ||||||| | ||||||||||| || ||||| |||||||||||| Sbjct: 111943 aacgtcaacatgctcaagctcatccagctcggcctcaccctctccgacgag 111993 Score = 42.1 bits (21), Expect = 2.1 Identities = 51/61 (83%) Strand = Plus / Plus Query: 505 ctggcagttcaactttcggggcttcgatccgcgctcagaccccgccaacgccgactccat 564 ||||||||||||||| || || ||||| || || | ||||| |||||||||||||||| Sbjct: 112038 ctggcagttcaacttccgcgggttcgacccccggaccgacccgtccaacgccgactccat 112097 Query: 565 c 565 | Sbjct: 112098 c 112098
>dbj|AK109485.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H04, full insert sequence Length = 1198 Score = 165 bits (83), Expect = 2e-37 Identities = 194/231 (83%) Strand = Plus / Plus Query: 230 gagggcgtagagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatc 289 |||||||| |||||||| |||||||||||| |||||| ||||||||| |||| | |||| Sbjct: 311 gagggcgtggagatccgggaggtatgggcggggaacctggaggcggagatcgcggcgatc 370 Query: 290 cgtgacgtcgtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtg 349 || |||| |||| | ||| ||||| |||| |||||||| |||||||||||||||||| Sbjct: 371 cgcgacgaggtcgaccggtacccgtacgtcgccatggacacggagttcccgggcatcgtg 430 Query: 350 tgccgcccgctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggcc 409 |||||||| |||| | ||| ||| ||| ||||||| ||||||||||| |||| ||||| Sbjct: 431 tgccgccccgtcggcaacttccgcaccaccgacgagttcaactacgccaacctcgaggcc 490 Query: 410 aacgtcgacatgctgagcctcatccagcttggtctcactctctccgacgag 460 |||||| ||||||| | ||||||||||| || ||||| |||||||||||| Sbjct: 491 aacgtcaacatgctcaagctcatccagctcggcctcaccctctccgacgag 541 Score = 42.1 bits (21), Expect = 2.1 Identities = 51/61 (83%) Strand = Plus / Plus Query: 505 ctggcagttcaactttcggggcttcgatccgcgctcagaccccgccaacgccgactccat 564 ||||||||||||||| || || ||||| || || | ||||| |||||||||||||||| Sbjct: 586 ctggcagttcaacttccgcgggttcgacccccggaccgacccgtccaacgccgactccat 645 Query: 565 c 565 | Sbjct: 646 c 646
>dbj|AK105990.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G12, full insert sequence Length = 1257 Score = 165 bits (83), Expect = 2e-37 Identities = 194/231 (83%) Strand = Plus / Plus Query: 230 gagggcgtagagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatc 289 |||||||| |||||||| |||||||||||| |||||| ||||||||| |||| | |||| Sbjct: 219 gagggcgtggagatccgggaggtatgggcggggaacctggaggcggagatcgcggcgatc 278 Query: 290 cgtgacgtcgtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtg 349 || |||| |||| | ||| ||||| |||| |||||||| |||||||||||||||||| Sbjct: 279 cgcgacgaggtcgaccggtacccgtacgtcgccatggacacggagttcccgggcatcgtg 338 Query: 350 tgccgcccgctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggcc 409 |||||||| |||| | ||| ||| ||| ||||||| ||||||||||| |||| ||||| Sbjct: 339 tgccgccccgtcggcaacttccgcaccaccgacgagttcaactacgccaacctcgaggcc 398 Query: 410 aacgtcgacatgctgagcctcatccagcttggtctcactctctccgacgag 460 |||||| ||||||| | ||||||||||| || ||||| |||||||||||| Sbjct: 399 aacgtcaacatgctcaagctcatccagctcggcctcaccctctccgacgag 449 Score = 42.1 bits (21), Expect = 2.1 Identities = 51/61 (83%) Strand = Plus / Plus Query: 505 ctggcagttcaactttcggggcttcgatccgcgctcagaccccgccaacgccgactccat 564 ||||||||||||||| || || ||||| || || | ||||| |||||||||||||||| Sbjct: 494 ctggcagttcaacttccgcgggttcgacccccggaccgacccgtccaacgccgactccat 553 Query: 565 c 565 | Sbjct: 554 c 554
>dbj|AK103781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145G16, full insert sequence Length = 1224 Score = 165 bits (83), Expect = 2e-37 Identities = 194/231 (83%) Strand = Plus / Plus Query: 230 gagggcgtagagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatc 289 |||||||| |||||||| |||||||||||| |||||| ||||||||| |||| | |||| Sbjct: 334 gagggcgtggagatccgggaggtatgggcggggaacctggaggcggagatcgcggcgatc 393 Query: 290 cgtgacgtcgtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtg 349 || |||| |||| | ||| ||||| |||| |||||||| |||||||||||||||||| Sbjct: 394 cgcgacgaggtcgaccggtacccgtacgtcgccatggacacggagttcccgggcatcgtg 453 Query: 350 tgccgcccgctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggcc 409 |||||||| |||| | ||| ||| ||| ||||||| ||||||||||| |||| ||||| Sbjct: 454 tgccgccccgtcggcaacttccgcaccaccgacgagttcaactacgccaacctcgaggcc 513 Query: 410 aacgtcgacatgctgagcctcatccagcttggtctcactctctccgacgag 460 |||||| ||||||| | ||||||||||| || ||||| |||||||||||| Sbjct: 514 aacgtcaacatgctcaagctcatccagctcggcctcaccctctccgacgag 564 Score = 42.1 bits (21), Expect = 2.1 Identities = 51/61 (83%) Strand = Plus / Plus Query: 505 ctggcagttcaactttcggggcttcgatccgcgctcagaccccgccaacgccgactccat 564 ||||||||||||||| || || ||||| || || | ||||| |||||||||||||||| Sbjct: 609 ctggcagttcaacttccgcgggttcgacccccggaccgacccgtccaacgccgactccat 668 Query: 565 c 565 | Sbjct: 669 c 669
>ref|XM_468264.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1094 Score = 129 bits (65), Expect = 1e-26 Identities = 173/209 (82%) Strand = Plus / Plus Query: 239 gagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatccgtgacgtc 298 |||||||| ||||| |||||| |||||||||| ||||||||| ||||||| |||||| Sbjct: 194 gagatccgggaggtgtgggcggacaacctcgaggaggagttcgcgctgatccgcgacgtc 253 Query: 299 gtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtgtgccgcccg 358 |||| ||| | | | | | |||| |||||||| |||||||| ||||||||||||||||| Sbjct: 254 gtcgacgagttccccttcgtcgccatggacacggagttccctggcatcgtgtgccgcccc 313 Query: 359 ctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggccaacgtcgac 418 |||| ||| |||||| | ||| |||||||||||||| |||||||||||||||||| Sbjct: 314 gtcggcgccttccgctccccggccgactacaactacgccacgctcaaggccaacgtcgac 373 Query: 419 atgctgagcctcatccagcttggtctcac 447 ||||| |||||||||||| || ||||| Sbjct: 374 atgctccacctcatccagctcggcctcac 402
>ref|XM_507027.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1695_H09.27-1 mRNA Length = 1415 Score = 129 bits (65), Expect = 1e-26 Identities = 173/209 (82%) Strand = Plus / Plus Query: 239 gagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatccgtgacgtc 298 |||||||| ||||| |||||| |||||||||| ||||||||| ||||||| |||||| Sbjct: 201 gagatccgggaggtgtgggcggacaacctcgaggaggagttcgcgctgatccgcgacgtc 260 Query: 299 gtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtgtgccgcccg 358 |||| ||| | | | | | |||| |||||||| |||||||| ||||||||||||||||| Sbjct: 261 gtcgacgagttccccttcgtcgccatggacacggagttccctggcatcgtgtgccgcccc 320 Query: 359 ctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggccaacgtcgac 418 |||| ||| |||||| | ||| |||||||||||||| |||||||||||||||||| Sbjct: 321 gtcggcgccttccgctccccggccgactacaactacgccacgctcaaggccaacgtcgac 380 Query: 419 atgctgagcctcatccagcttggtctcac 447 ||||| |||||||||||| || ||||| Sbjct: 381 atgctccacctcatccagctcggcctcac 409
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 129 bits (65), Expect = 1e-26 Identities = 173/209 (82%) Strand = Plus / Plus Query: 239 gagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatccgtgacgtc 298 |||||||| ||||| |||||| |||||||||| ||||||||| ||||||| |||||| Sbjct: 33872929 gagatccgggaggtgtgggcggacaacctcgaggaggagttcgcgctgatccgcgacgtc 33872988 Query: 299 gtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtgtgccgcccg 358 |||| ||| | | | | | |||| |||||||| |||||||| ||||||||||||||||| Sbjct: 33872989 gtcgacgagttccccttcgtcgccatggacacggagttccctggcatcgtgtgccgcccc 33873048 Query: 359 ctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggccaacgtcgac 418 |||| ||| |||||| | ||| |||||||||||||| |||||||||||||||||| Sbjct: 33873049 gtcggcgccttccgctccccggccgactacaactacgccacgctcaaggccaacgtcgac 33873108 Query: 419 atgctgagcctcatccagcttggtctcac 447 ||||| |||||||||||| || ||||| Sbjct: 33873109 atgctccacctcatccagctcggcctcac 33873137
>dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1695_H09 Length = 114721 Score = 129 bits (65), Expect = 1e-26 Identities = 173/209 (82%) Strand = Plus / Plus Query: 239 gagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatccgtgacgtc 298 |||||||| ||||| |||||| |||||||||| ||||||||| ||||||| |||||| Sbjct: 89507 gagatccgggaggtgtgggcggacaacctcgaggaggagttcgcgctgatccgcgacgtc 89566 Query: 299 gtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtgtgccgcccg 358 |||| ||| | | | | | |||| |||||||| |||||||| ||||||||||||||||| Sbjct: 89567 gtcgacgagttccccttcgtcgccatggacacggagttccctggcatcgtgtgccgcccc 89626 Query: 359 ctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggccaacgtcgac 418 |||| ||| |||||| | ||| |||||||||||||| |||||||||||||||||| Sbjct: 89627 gtcggcgccttccgctccccggccgactacaactacgccacgctcaaggccaacgtcgac 89686 Query: 419 atgctgagcctcatccagcttggtctcac 447 ||||| |||||||||||| || ||||| Sbjct: 89687 atgctccacctcatccagctcggcctcac 89715
>dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_E04 Length = 133621 Score = 129 bits (65), Expect = 1e-26 Identities = 173/209 (82%) Strand = Plus / Plus Query: 239 gagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatccgtgacgtc 298 |||||||| ||||| |||||| |||||||||| ||||||||| ||||||| |||||| Sbjct: 31892 gagatccgggaggtgtgggcggacaacctcgaggaggagttcgcgctgatccgcgacgtc 31951 Query: 299 gtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtgtgccgcccg 358 |||| ||| | | | | | |||| |||||||| |||||||| ||||||||||||||||| Sbjct: 31952 gtcgacgagttccccttcgtcgccatggacacggagttccctggcatcgtgtgccgcccc 32011 Query: 359 ctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggccaacgtcgac 418 |||| ||| |||||| | ||| |||||||||||||| |||||||||||||||||| Sbjct: 32012 gtcggcgccttccgctccccggccgactacaactacgccacgctcaaggccaacgtcgac 32071 Query: 419 atgctgagcctcatccagcttggtctcac 447 ||||| |||||||||||| || ||||| Sbjct: 32072 atgctccacctcatccagctcggcctcac 32100
>dbj|AK119386.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-B12, full insert sequence Length = 2885 Score = 129 bits (65), Expect = 1e-26 Identities = 173/209 (82%) Strand = Plus / Plus Query: 239 gagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatccgtgacgtc 298 |||||||| ||||| |||||| |||||||||| ||||||||| ||||||| |||||| Sbjct: 274 gagatccgggaggtgtgggcggacaacctcgaggaggagttcgcgctgatccgcgacgtc 333 Query: 299 gtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtgtgccgcccg 358 |||| ||| | | | | | |||| |||||||| |||||||| ||||||||||||||||| Sbjct: 334 gtcgacgagttccccttcgtcgccatggacacggagttccctggcatcgtgtgccgcccc 393 Query: 359 ctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggccaacgtcgac 418 |||| ||| |||||| | ||| |||||||||||||| |||||||||||||||||| Sbjct: 394 gtcggcgccttccgctccccggccgactacaactacgccacgctcaaggccaacgtcgac 453 Query: 419 atgctgagcctcatccagcttggtctcac 447 ||||| |||||||||||| || ||||| Sbjct: 454 atgctccacctcatccagctcggcctcac 482
>dbj|AK073025.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149N08, full insert sequence Length = 1415 Score = 129 bits (65), Expect = 1e-26 Identities = 173/209 (82%) Strand = Plus / Plus Query: 239 gagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatccgtgacgtc 298 |||||||| ||||| |||||| |||||||||| ||||||||| ||||||| |||||| Sbjct: 201 gagatccgggaggtgtgggcggacaacctcgaggaggagttcgcgctgatccgcgacgtc 260 Query: 299 gtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtgtgccgcccg 358 |||| ||| | | | | | |||| |||||||| |||||||| ||||||||||||||||| Sbjct: 261 gtcgacgagttccccttcgtcgccatggacacggagttccctggcatcgtgtgccgcccc 320 Query: 359 ctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggccaacgtcgac 418 |||| ||| |||||| | ||| |||||||||||||| |||||||||||||||||| Sbjct: 321 gtcggcgccttccgctccccggccgactacaactacgccacgctcaaggccaacgtcgac 380 Query: 419 atgctgagcctcatccagcttggtctcac 447 ||||| |||||||||||| || ||||| Sbjct: 381 atgctccacctcatccagctcggcctcac 409
>dbj|AK061820.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B10, full insert sequence Length = 1094 Score = 129 bits (65), Expect = 1e-26 Identities = 173/209 (82%) Strand = Plus / Plus Query: 239 gagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatccgtgacgtc 298 |||||||| ||||| |||||| |||||||||| ||||||||| ||||||| |||||| Sbjct: 194 gagatccgggaggtgtgggcggacaacctcgaggaggagttcgcgctgatccgcgacgtc 253 Query: 299 gtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtgtgccgcccg 358 |||| ||| | | | | | |||| |||||||| |||||||| ||||||||||||||||| Sbjct: 254 gtcgacgagttccccttcgtcgccatggacacggagttccctggcatcgtgtgccgcccc 313 Query: 359 ctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggccaacgtcgac 418 |||| ||| |||||| | ||| |||||||||||||| |||||||||||||||||| Sbjct: 314 gtcggcgccttccgctccccggccgactacaactacgccacgctcaaggccaacgtcgac 373 Query: 419 atgctgagcctcatccagcttggtctcac 447 ||||| |||||||||||| || ||||| Sbjct: 374 atgctccacctcatccagctcggcctcac 402
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 95.6 bits (48), Expect = 2e-16 Identities = 165/204 (80%) Strand = Plus / Plus Query: 239 gagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatccgtgacgtc 298 |||||||||||||| |||| | ||||||||||| |||||||| ||||| || || || Sbjct: 14874775 gagatccgcgaggtgtgggaggacaacctcgaggccgagttcgcggtgattcgggagatc 14874834 Query: 299 gtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtgtgccgcccg 358 || | ||| | | ||||| |||| |||||||| |||||||||||| |||| ||| | ||| Sbjct: 14874835 gttgacgacttcccgtacgtcgcgatggacacggagttcccgggcgtcgtctgcaggccg 14874894 Query: 359 ctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggccaacgtcgac 418 ||||||| || ||||| | ||| | ||||||||| || ||||| |||||||||||| Sbjct: 14874895 ctcgggacgttcaagtccaacgccgatttcaactacgcaacgctcaaagccaacgtcgac 14874954 Query: 419 atgctgagcctcatccagcttggt 442 ||||||| || |||||||||||| Sbjct: 14874955 atgctgaagcttatccagcttggt 14874978 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 506 tggcagttcaactttcggggcttcgatcc 534 ||||||||||||||||| ||||||||||| Sbjct: 14875042 tggcagttcaactttcgtggcttcgatcc 14875070
>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0707C02 Length = 163609 Score = 95.6 bits (48), Expect = 2e-16 Identities = 165/204 (80%) Strand = Plus / Plus Query: 239 gagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatccgtgacgtc 298 |||||||||||||| |||| | ||||||||||| |||||||| ||||| || || || Sbjct: 160164 gagatccgcgaggtgtgggaggacaacctcgaggccgagttcgcggtgattcgggagatc 160223 Query: 299 gtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtgtgccgcccg 358 || | ||| | | ||||| |||| |||||||| |||||||||||| |||| ||| | ||| Sbjct: 160224 gttgacgacttcccgtacgtcgcgatggacacggagttcccgggcgtcgtctgcaggccg 160283 Query: 359 ctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggccaacgtcgac 418 ||||||| || ||||| | ||| | ||||||||| || ||||| |||||||||||| Sbjct: 160284 ctcgggacgttcaagtccaacgccgatttcaactacgcaacgctcaaagccaacgtcgac 160343 Query: 419 atgctgagcctcatccagcttggt 442 ||||||| || |||||||||||| Sbjct: 160344 atgctgaagcttatccagcttggt 160367 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 506 tggcagttcaactttcggggcttcgatcc 534 ||||||||||||||||| ||||||||||| Sbjct: 160431 tggcagttcaactttcgtggcttcgatcc 160459
>dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0014G10 Length = 164147 Score = 95.6 bits (48), Expect = 2e-16 Identities = 165/204 (80%) Strand = Plus / Plus Query: 239 gagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatccgtgacgtc 298 |||||||||||||| |||| | ||||||||||| |||||||| ||||| || || || Sbjct: 83114 gagatccgcgaggtgtgggaggacaacctcgaggccgagttcgcggtgattcgggagatc 83173 Query: 299 gtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtgtgccgcccg 358 || | ||| | | ||||| |||| |||||||| |||||||||||| |||| ||| | ||| Sbjct: 83174 gttgacgacttcccgtacgtcgcgatggacacggagttcccgggcgtcgtctgcaggccg 83233 Query: 359 ctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggccaacgtcgac 418 ||||||| || ||||| | ||| | ||||||||| || ||||| |||||||||||| Sbjct: 83234 ctcgggacgttcaagtccaacgccgatttcaactacgcaacgctcaaagccaacgtcgac 83293 Query: 419 atgctgagcctcatccagcttggt 442 ||||||| || |||||||||||| Sbjct: 83294 atgctgaagcttatccagcttggt 83317 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 506 tggcagttcaactttcggggcttcgatcc 534 ||||||||||||||||| ||||||||||| Sbjct: 83381 tggcagttcaactttcgtggcttcgatcc 83409
>dbj|AK099984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129L05, full insert sequence Length = 1114 Score = 95.6 bits (48), Expect = 2e-16 Identities = 165/204 (80%) Strand = Plus / Plus Query: 239 gagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatccgtgacgtc 298 |||||||||||||| |||| | ||||||||||| |||||||| ||||| || || || Sbjct: 271 gagatccgcgaggtgtgggaggacaacctcgaggccgagttcgcggtgattcgggagatc 330 Query: 299 gtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtgtgccgcccg 358 || | ||| | | ||||| |||| |||||||| |||||||||||| |||| ||| | ||| Sbjct: 331 gttgacgacttcccgtacgtcgcgatggacacggagttcccgggcgtcgtctgcaggccg 390 Query: 359 ctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggccaacgtcgac 418 ||||||| || ||||| | ||| | ||||||||| || ||||| |||||||||||| Sbjct: 391 ctcgggacgttcaagtccaacgccgatttcaactacgcaacgctcaaagccaacgtcgac 450 Query: 419 atgctgagcctcatccagcttggt 442 ||||||| || |||||||||||| Sbjct: 451 atgctgaagcttatccagcttggt 474 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 506 tggcagttcaactttcggggcttcgatcc 534 ||||||||||||||||| ||||||||||| Sbjct: 538 tggcagttcaactttcgtggcttcgatcc 566
>dbj|AK065377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021M02, full insert sequence Length = 3225 Score = 95.6 bits (48), Expect = 2e-16 Identities = 165/204 (80%) Strand = Plus / Plus Query: 239 gagatccgcgaggtatgggcgacgaacctcgaggcggagttcgccgtgatccgtgacgtc 298 |||||||||||||| |||| | ||||||||||| |||||||| ||||| || || || Sbjct: 254 gagatccgcgaggtgtgggaggacaacctcgaggccgagttcgcggtgattcgggagatc 313 Query: 299 gtcggcgattactcgtacatcgctatggacaccgagttcccgggcatcgtgtgccgcccg 358 || | ||| | | ||||| |||| |||||||| |||||||||||| |||| ||| | ||| Sbjct: 314 gttgacgacttcccgtacgtcgcgatggacacggagttcccgggcgtcgtctgcaggccg 373 Query: 359 ctcgggagctttcgctccaatgacgagtacaactacgccaccctcaaggccaacgtcgac 418 ||||||| || ||||| | ||| | ||||||||| || ||||| |||||||||||| Sbjct: 374 ctcgggacgttcaagtccaacgccgatttcaactacgcaacgctcaaagccaacgtcgac 433 Query: 419 atgctgagcctcatccagcttggt 442 ||||||| || |||||||||||| Sbjct: 434 atgctgaagcttatccagcttggt 457 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 506 tggcagttcaactttcggggcttcgatcc 534 ||||||||||||||||| ||||||||||| Sbjct: 521 tggcagttcaactttcgtggcttcgatcc 549
>gb|AY112022.1| Zea mays CL704_1 mRNA sequence Length = 1244 Score = 91.7 bits (46), Expect = 2e-15 Identities = 139/170 (81%) Strand = Plus / Plus Query: 269 gaggcggagttcgccgtgatccgtgacgtcgtcggcgattactcgtacatcgctatggac 328 |||| ||||||||| ||||||| ||| |||||| ||| ||| | | | |||| |||||| Sbjct: 185 gaggaggagttcgcgctgatccgcgacatcgtcgacgagtacccattcgtcgcgatggac 244 Query: 329 accgagttcccgggcatcgtgtgccgcccgctcgggagctttcgctccaatgacgagtac 388 || ||||||||||||||||| ||||| || | || ||| ||||| | ||| ||| Sbjct: 245 acggagttcccgggcatcgtctgccggcccgttggcgccttccgctctcccgccgactac 304 Query: 389 aactacgccaccctcaaggccaacgtcgacatgctgagcctcatccagct 438 |||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct: 305 aactacgccaccctcaaggccaacgtggacatgctgcacctcatccagct 354
>gb|BT009163.1| Triticum aestivum clone wl1n.pk0094.h5:fis, full insert mRNA sequence Length = 739 Score = 60.0 bits (30), Expect = 9e-06 Identities = 78/94 (82%) Strand = Plus / Plus Query: 505 ctggcagttcaactttcggggcttcgatccgcgctcagaccccgccaacgccgactccat 564 |||||||||||| || ||||||||| | |||| | ||||||| || | |||||||||| Sbjct: 76 ctggcagttcaatttccggggcttcaacccgcacacagacccttacagccccgactccat 135 Query: 565 cgacctgctacgcaacagtgggatcgacttcgac 598 ||||||||| ||| ||| || |||||||||||| Sbjct: 136 cgacctgctccgccgcagcggcatcgacttcgac 169
>gb|BT017748.1| Zea mays clone EL01N0450A11.c mRNA sequence Length = 1240 Score = 54.0 bits (27), Expect = 5e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 388 caactacgccaccctcaaggccaacgtcgacatgctgagcctcatccagcttggtctcac 447 |||||||||| ||||| ||| ||||||| || |||| | |||||||||||||| ||||| Sbjct: 465 caactacgccgccctcgagggcaacgtcaacgtgctcaagctcatccagcttggcctcac 524 Query: 448 tctctcc 454 |||||| Sbjct: 525 cctctcc 531 Score = 44.1 bits (22), Expect = 0.52 Identities = 76/94 (80%) Strand = Plus / Plus Query: 505 ctggcagttcaactttcggggcttcgatccgcgctcagaccccgccaacgccgactccat 564 ||||||||| ||||| ||||||||||| |||| | | ||||| | | | ||||||||| Sbjct: 582 ctggcagtttaacttccggggcttcgacccgcacaccgacccttctagcagcgactccat 641 Query: 565 cgacctgctacgcaacagtgggatcgacttcgac 598 ||| ||||| ||| ||| || |||||||||||| Sbjct: 642 cgatctgctccgccgcagcggcatcgacttcgac 675
>gb|AY109688.1| Zea mays CL339_1 mRNA sequence Length = 1928 Score = 54.0 bits (27), Expect = 5e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 388 caactacgccaccctcaaggccaacgtcgacatgctgagcctcatccagcttggtctcac 447 |||||||||| ||||| ||| ||||||| || |||| | |||||||||||||| ||||| Sbjct: 458 caactacgccgccctcgagggcaacgtcaacgtgctcaagctcatccagcttggcctcac 517 Query: 448 tctctcc 454 |||||| Sbjct: 518 cctctcc 524 Score = 44.1 bits (22), Expect = 0.52 Identities = 76/94 (80%) Strand = Plus / Plus Query: 505 ctggcagttcaactttcggggcttcgatccgcgctcagaccccgccaacgccgactccat 564 ||||||||| ||||| ||||||||||| |||| | | ||||| | | | ||||||||| Sbjct: 575 ctggcagtttaacttccggggcttcgacccgcacaccgacccttctagcagcgactccat 634 Query: 565 cgacctgctacgcaacagtgggatcgacttcgac 598 ||| ||||| ||| ||| || |||||||||||| Sbjct: 635 cgatctgctccgccgcagcggcatcgacttcgac 668
>ref|XM_469696.1| Oryza sativa (japonica cultivar-group), mRNA Length = 411 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Plus Query: 263 aacctcgaggcggagttcgccgtgatccgtgacgtcgtcggcgattactcgtacatcgct 322 ||||| |||| |||| |||| ||||||| |||||||||| ||| | | | | | |||| Sbjct: 196 aaccttgaggtggagctcgcgttgatccgcgacgtcgtcgacgagttccccttcgtcgcc 255 Query: 323 atggacaccgagttcccgggcatcgtgtgc 352 |||||||| |||||||| |||||||||||| Sbjct: 256 atggacacagagttccctggcatcgtgtgc 285
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 263 aacctcgaggcggagttcgccgtgatccgtgacgtcgtcggcgattactcgtacatcgct 322 ||||| |||| |||| |||| ||||||| |||||||||| ||| | | | | | |||| Sbjct: 30265943 aaccttgaggtggagctcgcgttgatccgcgacgtcgtcgacgagttccccttcgtcgcc 30265884 Query: 323 atggacaccgagttcccgggcatcgtgtgc 352 |||||||| |||||||| |||||||||||| Sbjct: 30265883 atggacacagagttccctggcatcgtgtgc 30265854
>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete sequence Length = 130359 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 263 aacctcgaggcggagttcgccgtgatccgtgacgtcgtcggcgattactcgtacatcgct 322 ||||| |||| |||| |||| ||||||| |||||||||| ||| | | | | | |||| Sbjct: 57623 aaccttgaggtggagctcgcgttgatccgcgacgtcgtcgacgagttccccttcgtcgcc 57564 Query: 323 atggacaccgagttcccgggcatcgtgtgc 352 |||||||| |||||||| |||||||||||| Sbjct: 57563 atggacacagagttccctggcatcgtgtgc 57534
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 263 aacctcgaggcggagttcgccgtgatccgtgacgtcgtcggcgattactcgtacatcgct 322 ||||| |||| |||| |||| ||||||| |||||||||| ||| | | | | | |||| Sbjct: 30357365 aaccttgaggtggagctcgcgttgatccgcgacgtcgtcgacgagttccccttcgtcgcc 30357306 Query: 323 atggacaccgagttcccgggcatcgtgtgc 352 |||||||| |||||||| |||||||||||| Sbjct: 30357305 atggacacagagttccctggcatcgtgtgc 30357276
>dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT18I21, TM1144, complete sequence Length = 135217 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 402 tcaaggccaacgtcgacatgctgagcctcatccagcttggtctcactctctccgacg 458 ||||||||||||| ||| |||| | |||||| || |||||||||| |||||||||| Sbjct: 13155 tcaaggccaacgttgacgtgctcaacctcattcaagttggtctcaccctctccgacg 13211
>gb|AC090885.1|AC090885 Homo sapiens chromosome 3 clone RP11-270I6 map 3p, complete sequence Length = 193264 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 50 ctcctgttattactttccccac 71 |||||||||||||||||||||| Sbjct: 138001 ctcctgttattactttccccac 138022
>gb|AC066589.3|AC066589 Homo sapiens chromosome 3 clone RP11-309M10 map 3p, complete sequence Length = 182171 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 50 ctcctgttattactttccccac 71 |||||||||||||||||||||| Sbjct: 114814 ctcctgttattactttccccac 114793
>gb|AC069246.6| Homo sapiens chromosome 3 clone RP11-221A8 map 3p, complete sequence Length = 175121 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 50 ctcctgttattactttccccac 71 |||||||||||||||||||||| Sbjct: 60717 ctcctgttattactttccccac 60696
>ref|XM_465099.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1822 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 agcccgtcgacgaggagggcg 236 ||||||||||||||||||||| Sbjct: 351 agcccgtcgacgaggagggcg 371
>emb|AL035422.12|HS164F3 Human DNA sequence from clone RP1-164F3 on chromosome Xq21.33-23 Contains a ribosomal protein L21 (RPL21) pseudogene, the TIMM8A gene for translocase of inner mitochondrial membrane 8 homolog A (yeast), the BTK gene for Bruton agammaglobulinemia tyrosine kinase, the RPL36A gene for ribosomal protein L36a, the GLA gene for alpha galactosidase, the HNRPH2 gene for heterogeneous nuclear ribonucleoprotein H2 (H'), the gene for a novel protein, a peptidylprolyl isomerase A (cyclophilin A) (PPIA) pseudogene and two CpG islands, complete sequence Length = 136693 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 178 tgccccaccgccccccgcctcgtcc 202 |||||| |||||||||||||||||| Sbjct: 97931 tgcccccccgccccccgcctcgtcc 97955
>gb|AE012493.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 401 of 460 of the complete genome Length = 10907 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 448 tctctccgacgagaacggcgc 468 ||||||||||||||||||||| Sbjct: 6078 tctctccgacgagaacggcgc 6058
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 448 tctctccgacgagaacggcgc 468 ||||||||||||||||||||| Sbjct: 4489531 tctctccgacgagaacggcgc 4489511
>dbj|AK066972.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089I06, full insert sequence Length = 1821 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 agcccgtcgacgaggagggcg 236 ||||||||||||||||||||| Sbjct: 350 agcccgtcgacgaggagggcg 370
>gb|AC122315.5| Mus musculus BAC clone RP23-302P6 from 10, complete sequence Length = 197288 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 28 cccctgctcccgcctccctgtcctc 52 ||||||||||||||||||| ||||| Sbjct: 52666 cccctgctcccgcctccctctcctc 52690
>gb|U78027.1|HSU78027 Homo sapiens Bruton's tyrosine kinase (BTK), alpha-D-galactosidase A (GLA), L44-like ribosomal protein (L44L) and FTP3 (FTP3) genes, complete cds Length = 99014 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 tgccccaccgccccccgcctcgtcc 202 |||||| |||||||||||||||||| Sbjct: 7242 tgcccccccgccccccgcctcgtcc 7218
>gb|DQ141111.1| Drosophila yakuba Dscam gene, partial sequence Length = 56981 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 tcgacgaggagggcgtagagatcc 245 |||||||||||||||| ||||||| Sbjct: 14561 tcgacgaggagggcgtggagatcc 14584
>gb|DQ141109.1| Drosophila simulans Dscam gene, partial sequence Length = 45053 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 tcgacgaggagggcgtagagatcc 245 |||||||||||||||| ||||||| Sbjct: 5159 tcgacgaggagggcgtggagatcc 5182
>gb|DQ141105.1| Drosophila erecta Dscam gene, partial sequence Length = 36265 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 tcgacgaggagggcgtagagatcc 245 |||||||||||||||| ||||||| Sbjct: 5404 tcgacgaggagggcgtggagatcc 5427
>ref|NM_183930.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 975 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 acgtcgtcggcgattactcgtaca 317 ||||||||||||| |||||||||| Sbjct: 830 acgtcgtcggcgactactcgtaca 853
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 ccctcaaggccaacgtcgac 418 |||||||||||||||||||| Sbjct: 4850747 ccctcaaggccaacgtcgac 4850728
>gb|AC009739.4| Drosophila melanogaster clone BACR26B18, complete sequence Length = 173641 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 tcgacgaggagggcgtagagatcc 245 |||||||||||||||| ||||||| Sbjct: 116550 tcgacgaggagggcgtggagatcc 116527
>gb|AC146440.5| Pan troglodytes BAC clone RP43-11P11 from 7, complete sequence Length = 181369 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 ctgccccaccgccccccgcc 196 |||||||||||||||||||| Sbjct: 61416 ctgccccaccgccccccgcc 61435
>emb|AL591166.12| Human DNA sequence from clone RP11-315O13 on chromosome 1, complete sequence Length = 23352 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 cccctgctcccgcctccctg 47 |||||||||||||||||||| Sbjct: 19268 cccctgctcccgcctccctg 19249
>emb|BX883045.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 4/11 Length = 346406 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ggatgcaccagctccgatgt 176 |||||||||||||||||||| Sbjct: 309716 ggatgcaccagctccgatgt 309697
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 agcccgtcgacgaggagggcgtag 239 ||||||||| |||||||||||||| Sbjct: 253851 agcccgtcgccgaggagggcgtag 253828
>gb|DQ317106.1| Drosophila yakuba Dscam gene, exons 3 through 24 Length = 60717 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 tcgacgaggagggcgtagagatcc 245 |||||||||||||||| ||||||| Sbjct: 15143 tcgacgaggagggcgtggagatcc 15166
>gb|AF385930.1|AF385930 Drosophila yakuba DSCAM splice variants gene, exons 3, 4 and 5 and partial cds, alternatively spliced Length = 6995 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 tcgacgaggagggcgtagagatcc 245 |||||||||||||||| ||||||| Sbjct: 5148 tcgacgaggagggcgtggagatcc 5171
>gb|DQ357063.1| Phytophthora sojae cell 5A endo-1,4-betaglucanase (EGL-V.4) mRNA, complete cds Length = 1326 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ctcaaggccaacgtcgacat 420 |||||||||||||||||||| Sbjct: 940 ctcaaggccaacgtcgacat 959
>emb|AL117038.1|CNS01DNA Botrytis cinerea strain T4 cDNA library Length = 480 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccctcaaggccaacgtcgac 418 |||||||||||||||||||| Sbjct: 87 ccctcaaggccaacgtcgac 106
>emb|AL117035.1|CNS01DN7 Botrytis cinerea strain T4 cDNA library Length = 480 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccctcaaggccaacgtcgac 418 |||||||||||||||||||| Sbjct: 87 ccctcaaggccaacgtcgac 106
>emb|AL116748.1|CNS01DF8 Botrytis cinerea strain T4 cDNA library Length = 636 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccctcaaggccaacgtcgac 418 |||||||||||||||||||| Sbjct: 346 ccctcaaggccaacgtcgac 365
>emb|AL116694.1|CNS01DDQ Botrytis cinerea strain T4 cDNA library Length = 660 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccctcaaggccaacgtcgac 418 |||||||||||||||||||| Sbjct: 334 ccctcaaggccaacgtcgac 353
>emb|AL114101.1|CNS01BDP Botrytis cinerea strain T4 cDNA library Length = 636 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccctcaaggccaacgtcgac 418 |||||||||||||||||||| Sbjct: 229 ccctcaaggccaacgtcgac 248
>emb|AL112985.1|CNS01AIP Botrytis cinerea strain T4 cDNA library Length = 540 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccctcaaggccaacgtcgac 418 |||||||||||||||||||| Sbjct: 146 ccctcaaggccaacgtcgac 165
>emb|AL111926.1|CNS019PA Botrytis cinerea strain T4 cDNA library Length = 780 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccctcaaggccaacgtcgac 418 |||||||||||||||||||| Sbjct: 340 ccctcaaggccaacgtcgac 359
>emb|AL111623.1|CNS019GV Botrytis cinerea strain T4 cDNA library Length = 480 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccctcaaggccaacgtcgac 418 |||||||||||||||||||| Sbjct: 78 ccctcaaggccaacgtcgac 97
>emb|AL111776.1|CNS019L4 Botrytis cinerea strain T4 cDNA library Length = 480 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ccctcaaggccaacgtcgac 418 |||||||||||||||||||| Sbjct: 36 ccctcaaggccaacgtcgac 55
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 tcgcaaaccctaaccctagc 113 |||||||||||||||||||| Sbjct: 7452601 tcgcaaaccctaaccctagc 7452620
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 acgtcgtcggcgattactcgtaca 317 ||||||||||||| |||||||||| Sbjct: 13350444 acgtcgtcggcgactactcgtaca 13350467
>gb|AY787762.1| Streptomyces filamentosus strain NRRL 11379 daptomycin biosynthetic gene cluster, partial sequence Length = 127559 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 tcgtgtgccgcccgctcggg 364 |||||||||||||||||||| Sbjct: 51869 tcgtgtgccgcccgctcggg 51850
>gb|AC006343.3| Homo sapiens PAC clone RP4-548K24 from 7q34-q36, complete sequence Length = 124877 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 ctgccccaccgccccccgcc 196 |||||||||||||||||||| Sbjct: 5755 ctgccccaccgccccccgcc 5736
>gb|AF260530.1| Drosophila melanogaster Dscam gene, complete cds Length = 69145 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 tcgacgaggagggcgtagagatcc 245 |||||||||||||||| ||||||| Sbjct: 18519 tcgacgaggagggcgtggagatcc 18542
>dbj|AP003331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088D01 Length = 146144 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 acgtcgtcggcgattactcgtaca 317 ||||||||||||| |||||||||| Sbjct: 90802 acgtcgtcggcgactactcgtaca 90825
>dbj|AP005246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0061L20 Length = 138926 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 tcgcaaaccctaaccctagc 113 |||||||||||||||||||| Sbjct: 30915 tcgcaaaccctaaccctagc 30934
>dbj|AK098873.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C18, full insert sequence Length = 1778 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 tgccgcccgctcgggagctt 369 |||||||||||||||||||| Sbjct: 230 tgccgcccgctcgggagctt 211
>gb|AE003841.5| Drosophila melanogaster chromosome 2R, section 9 of 73 of the complete sequence Length = 266427 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 tcgacgaggagggcgtagagatcc 245 |||||||||||||||| ||||||| Sbjct: 113603 tcgacgaggagggcgtggagatcc 113580
>gb|AC005452.1|AC005452 Drosophila melanogaster, chromosome 2R, region 43B2-43C2, P1 clone DS07185, complete sequence Length = 79333 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 tcgacgaggagggcgtagagatcc 245 |||||||||||||||| ||||||| Sbjct: 78963 tcgacgaggagggcgtggagatcc 78986 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,192,041 Number of Sequences: 3902068 Number of extensions: 3192041 Number of successful extensions: 70149 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69606 Number of HSP's gapped (non-prelim): 525 length of query: 598 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 575 effective length of database: 17,143,297,704 effective search space: 9857396179800 effective search space used: 9857396179800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
