ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27d23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF37_ARATH (P56820) Eukaryotic translation initiation factor 3 s... 194 8e-50
2IF37_HUMAN (O15371) Eukaryotic translation initiation factor 3 s... 117 2e-26
3IF37_MOUSE (O70194) Eukaryotic translation initiation factor 3 s... 115 6e-26
4IF37_SCHPO (O94236) Eukaryotic translation initiation factor 3 s... 112 6e-25
5IF37_CAEEL (P30642) Putative eukaryotic translation initiation f... 103 2e-22
6AKR1_GIBZE (Q4I8B6) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Anky... 32 0.85
7PFA4_NEUCR (Q7SCY6) Palmitoyltransferase PFA4 (EC 2.3.1.-) (Prot... 31 1.9
8AKR1_ASPOR (Q7Z8U2) Palmitoyltransferase akr1 (EC 2.3.1.-) (Anky... 30 2.5
9ZDH13_MOUSE (Q9CWU2) Probable palmitoyltransferase ZDHHC13 (EC 2... 30 2.5
10AKR1_NEUCR (Q7S3M5) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Anky... 30 2.5
11ZDH13_PONPY (Q5NVB9) Probable palmitoyltransferase ZDHHC13 (EC 2... 30 3.2
12ZDH13_MACFA (Q4R690) Probable palmitoyltransferase ZDHHC13 (EC 2... 30 3.2
13MUC13_RAT (P97881) Mucin-13 precursor 30 3.2
14JAK2_RAT (Q62689) Tyrosine-protein kinase JAK2 (EC 2.7.10.2) (Ja... 29 5.5
15JAK2_MOUSE (Q62120) Tyrosine-protein kinase JAK2 (EC 2.7.10.2) (... 29 5.5
16K0195_HUMAN (Q12767) Protein KIAA0195 (Transmembrane protein 94) 29 5.5
17ZDH13_HUMAN (Q8IUH4) Probable palmitoyltransferase ZDHHC13 (EC 2... 29 5.5
18ENGC_ERWCT (Q6D036) Probable GTPase engC (EC 3.6.1.-) 29 5.5
19SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precurs... 29 7.2
20FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor 29 7.2
21EFTS_MESFL (Q6F0Q5) Elongation factor Ts (EF-Ts) 29 7.2
22ACSA_SYNY3 (Q55404) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (A... 29 7.2
23AKR1_EMENI (Q5B0V6) Palmitoyltransferase akr1 (EC 2.3.1.-) (Anky... 28 9.4
24SYA_CHLAB (Q5L512) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 28 9.4
25BAZ2A_HUMAN (Q9UIF9) Bromodomain adjacent to zinc finger domain ... 28 9.4
26ADEC_METAC (Q8TNH5) Adenine deaminase (EC 3.5.4.2) (Adenase) (Ad... 28 9.4

>IF37_ARATH (P56820) Eukaryotic translation initiation factor 3 subunit 7|
           (eIF-3 zeta) (eIF3d) (p66)
          Length = 591

 Score =  194 bits (494), Expect = 8e-50
 Identities = 88/113 (77%), Positives = 104/113 (92%)
 Frame = +3

Query: 6   QALLSGADMMKLGYVSRVHPRDHFNHSILTVMGYKPRDFATQINLNTANMWGIVKSIVDI 185
           QALL+ ADMMK+G+VSRVHPRDHFNH IL+V+GYKP+DFA QINLNT+NMWGIVKSIVD+
Sbjct: 457 QALLANADMMKIGFVSRVHPRDHFNHVILSVLGYKPKDFAGQINLNTSNMWGIVKSIVDL 516

Query: 186 CMKFEEGKYVLVKDPAKPQMRIYQVPNDAFENDYVEEPLPEEEQVRPATDDVD 344
           CMK  EGKYVLVKDP+KPQ+RIY+VP DAFENDYVEEPLPE+EQV+P  ++ +
Sbjct: 517 CMKLSEGKYVLVKDPSKPQVRIYEVPPDAFENDYVEEPLPEDEQVQPTEENTE 569



to top

>IF37_HUMAN (O15371) Eukaryotic translation initiation factor 3 subunit 7|
           (eIF-3 zeta) (eIF3 p66) (eIF3d)
          Length = 548

 Score =  117 bits (292), Expect = 2e-26
 Identities = 52/103 (50%), Positives = 74/103 (71%)
 Frame = +3

Query: 9   ALLSGADMMKLGYVSRVHPRDHFNHSILTVMGYKPRDFATQINLNTANMWGIVKSIVDIC 188
           ALL+G++ +KLGYVSR H +D   H IL    +KP +FA+QINL+  N WGI++ ++DIC
Sbjct: 439 ALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDIC 498

Query: 189 MKFEEGKYVLVKDPAKPQMRIYQVPNDAFENDYVEEPLPEEEQ 317
           MK EEGKY+++KDP K  +R+Y +P+  F +D  EE   EEE+
Sbjct: 499 MKLEEGKYLILKDPNKQVIRVYSLPDGTFSSDEDEEEEEEEEE 541



to top

>IF37_MOUSE (O70194) Eukaryotic translation initiation factor 3 subunit 7|
           (eIF-3 zeta) (eIF3 p66) (eIF3d)
          Length = 547

 Score =  115 bits (288), Expect = 6e-26
 Identities = 51/103 (49%), Positives = 74/103 (71%)
 Frame = +3

Query: 9   ALLSGADMMKLGYVSRVHPRDHFNHSILTVMGYKPRDFATQINLNTANMWGIVKSIVDIC 188
           ALL+G++ +KLGYVSR H +D   H IL    +KP +FA+QINL+  N WGI++ ++DIC
Sbjct: 438 ALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDIC 497

Query: 189 MKFEEGKYVLVKDPAKPQMRIYQVPNDAFENDYVEEPLPEEEQ 317
           MK EEGKY+++KDP K  +R+Y +P+  F ++  EE   EEE+
Sbjct: 498 MKLEEGKYLILKDPNKQVIRVYSLPDGTFSSEEDEEDEEEEEE 540



to top

>IF37_SCHPO (O94236) Eukaryotic translation initiation factor 3 subunit 7|
           homolog (Microtubule-destabilizing protein moe1)
          Length = 567

 Score =  112 bits (279), Expect = 6e-25
 Identities = 50/91 (54%), Positives = 70/91 (76%)
 Frame = +3

Query: 6   QALLSGADMMKLGYVSRVHPRDHFNHSILTVMGYKPRDFATQINLNTANMWGIVKSIVDI 185
           +ALL+G D MK+G+VSR + RD  +H IL V+ YKP D A+Q+NL+ +N WGIV++I D+
Sbjct: 464 EALLAGVDSMKVGFVSRSNARDAQHHGILGVVAYKPADLASQMNLSLSNGWGIVRTIADV 523

Query: 186 CMKFEEGKYVLVKDPAKPQMRIYQVPNDAFE 278
           C+K  +GKYVLVKDP +P +R+Y VP + FE
Sbjct: 524 CLKMPDGKYVLVKDPNRPILRLYSVPPNTFE 554



to top

>IF37_CAEEL (P30642) Putative eukaryotic translation initiation factor 3|
           subunit 7 (eIF-3 zeta) (eIF3d)
          Length = 570

 Score =  103 bits (257), Expect = 2e-22
 Identities = 48/93 (51%), Positives = 65/93 (69%)
 Frame = +3

Query: 6   QALLSGADMMKLGYVSRVHPRDHFNHSILTVMGYKPRDFATQINLNTANMWGIVKSIVDI 185
           QALL+G+D MKLGYVSR + R   NHSIL     KP +FA+ I LN  N WGI++ ++D 
Sbjct: 465 QALLAGSDTMKLGYVSRNNARSTQNHSILLTQYVKPTEFASNIALNMDNCWGILRCVIDS 524

Query: 186 CMKFEEGKYVLVKDPAKPQMRIYQVPNDAFEND 284
           CMK + GKY+L+KDP  P +R+Y +P   FE++
Sbjct: 525 CMKQKPGKYLLMKDPQSPVIRLYSLPEGTFESE 557



to top

>AKR1_GIBZE (Q4I8B6) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin|
           repeat-containing protein AKR1)
          Length = 702

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = +2

Query: 20  WRGHDEVGLCVSCAPPRPLQPLHTHCHGLQAKRFCYPDQPQHCKHVGNCQVDCGHMH 190
           W+ +DE   CV+C    PL+    HC   Q    C      HC  V NC     H H
Sbjct: 422 WK-YDETNFCVTCMIQTPLR--SKHCRRCQR---CVAKHDHHCPWVYNCVGINNHRH 472



to top

>PFA4_NEUCR (Q7SCY6) Palmitoyltransferase PFA4 (EC 2.3.1.-) (Protein fatty|
           acyltransferase 4)
          Length = 486

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/48 (33%), Positives = 18/48 (37%)
 Frame = +2

Query: 23  RGHDEVGLCVSCAPPRPLQPLHTHCHGLQAKRFCYPDQPQHCKHVGNC 166
           RG  +   C  C  P+P  P   HC        C P    HC   GNC
Sbjct: 96  RGPQKAKWCKKCDAPKP--PRAHHCRHCAR---CIPRMDHHCPWTGNC 138



to top

>AKR1_ASPOR (Q7Z8U2) Palmitoyltransferase akr1 (EC 2.3.1.-) (Ankyrin|
           repeat-containing protein akr1)
          Length = 737

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = +2

Query: 11  FTIWRGHDEVGLCVSCAPPRPLQPLHTHCHGLQAKRFCYPDQPQHCKHVGNC 166
           F  W+  DE   CVSC   RPL+    HC        C      HC  + NC
Sbjct: 446 FEQWK-FDEENFCVSCMVRRPLR--SKHCKRCAR---CVAKHDHHCPWIDNC 491



to top

>ZDH13_MOUSE (Q9CWU2) Probable palmitoyltransferase ZDHHC13 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 13) (DHHC-13)
           (Huntingtin-interacting protein 14-related protein)
           (HIP14-related protein)
          Length = 622

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +2

Query: 47  CVSCAPPRPLQPLHTHCHGLQAKRFCYPDQPQHCKHVGNCQVDCGHMHEV 196
           C SC   +PL+ LH H       RF      QHC   G C     H H +
Sbjct: 428 CTSCLIRKPLRSLHCHVCNSCVARF-----DQHCFWTGRCIGFGNHHHYI 472



to top

>AKR1_NEUCR (Q7S3M5) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin|
           repeat-containing protein AKR1)
          Length = 729

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = +2

Query: 14  TIWRGHDEVGLCVSCAPPRPLQPLHTHCHGLQAKRFCYPDQPQHCKHVGNCQVDCGHMH 190
           ++W+  DE   CV+C    PL+    HC   Q    C      HC  V NC     H H
Sbjct: 432 SLWK-FDESNFCVTCMIRTPLR--SKHCRRCQR---CVAKHDHHCPWVYNCIGVNNHRH 484



to top

>ZDH13_PONPY (Q5NVB9) Probable palmitoyltransferase ZDHHC13 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 13) (DHHC-13)
          Length = 622

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 47  CVSCAPPRPLQPLHTH-CHGLQAKRFCYPDQPQHCKHVGNCQVDCGHMH 190
           C SC   +PL+ LH H C+       C     QHC   G C +  G+ H
Sbjct: 428 CTSCLIRKPLRSLHCHVCNS------CVARYDQHCLWTGRC-IGFGNHH 469



to top

>ZDH13_MACFA (Q4R690) Probable palmitoyltransferase ZDHHC13 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 13) (DHHC-13)
          Length = 622

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 47  CVSCAPPRPLQPLHTH-CHGLQAKRFCYPDQPQHCKHVGNCQVDCGHMH 190
           C SC   +PL+ LH H C+       C     QHC   G C +  G+ H
Sbjct: 428 CTSCLIRKPLRSLHCHVCNS------CVARYDQHCLWTGRC-IGFGNHH 469



to top

>MUC13_RAT (P97881) Mucin-13 precursor|
          Length = 547

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +1

Query: 61  TPATTSTTPYSLSWATSQEILLPRSTSTLQT 153
           TP TT+T P S S+ T     LP STST  T
Sbjct: 91  TPTTTATQPTSTSFQTPGTTQLPSSTSTPTT 121



to top

>JAK2_RAT (Q62689) Tyrosine-protein kinase JAK2 (EC 2.7.10.2) (Janus kinase|
           2) (JAK-2)
          Length = 1132

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 44  LCVSCAPPRPLQPLHTHCHG 103
           LC   APP  L+ +H++CHG
Sbjct: 383 LCKEVAPPAVLENIHSNCHG 402



to top

>JAK2_MOUSE (Q62120) Tyrosine-protein kinase JAK2 (EC 2.7.10.2) (Janus kinase|
           2) (JAK-2)
          Length = 1129

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 44  LCVSCAPPRPLQPLHTHCHG 103
           LC   APP  L+ +H++CHG
Sbjct: 383 LCKEVAPPAVLENIHSNCHG 402



to top

>K0195_HUMAN (Q12767) Protein KIAA0195 (Transmembrane protein 94)|
          Length = 1356

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 23/98 (23%), Positives = 40/98 (40%)
 Frame = -2

Query: 311  LLWKWLFNIIVLKRIIRNLIDPHLWLGRIFHKHILALFKLHAYVHNRLDNSPHVCSVEVD 132
            L W     +++L ++++  +D  LW  R  H            VH  L++ P        
Sbjct: 1267 LWWAVTVPVVLLGQVVQTAVDLQLWTHRDSH------------VHFGLEDVP-------- 1306

Query: 131  LGSKISWLVAHDSEYGVVEVVAGVHTRHITQLHHVRAR 18
                ++WL+      G + +V  V T  I +LH +R R
Sbjct: 1307 ---LLTWLL------GCLSLVLVVVTNEIVKLHEIRVR 1335



to top

>ZDH13_HUMAN (Q8IUH4) Probable palmitoyltransferase ZDHHC13 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 13) (DHHC-13)
           (Huntingtin-interacting protein 14-related protein)
           (HIP14-related protein) (Huntingtin-interacting protein
           HIP3RP) (Putativ
          Length = 622

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +2

Query: 47  CVSCAPPRPLQPLHTHCHGLQAKRFCYPDQPQHCKHVGNCQVDCGHMH 190
           C SC   +PL+ LH H         C     QHC   G C +  G+ H
Sbjct: 428 CTSCLIRKPLRSLHCH-----VCNCCVARYDQHCLWTGRC-IGFGNHH 469



to top

>ENGC_ERWCT (Q6D036) Probable GTPase engC (EC 3.6.1.-)|
          Length = 349

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = -2

Query: 212 ILALFKLHAYVHNRLDNSPHVCSVEVDL-----GSKISWLVAHDSEYGVVEVVAGVHTRH 48
           I++ F +HA V    D     C++   +     G ++ W   H+S  G+  +V  VH RH
Sbjct: 44  IISRFGMHADVE-ATDGVVRRCNIRRTISSLVTGDRVVWRPGHESLAGISGIVEAVHPRH 102



to top

>SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precursor (Acetyl LDL|
           receptor) (Scavenger receptor class F member 1)
          Length = 830

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
 Frame = +2

Query: 35  EVGLCVSCAPPRPLQPLHTHCHGLQAKRFCYP--------DQPQHCKHVGNCQVDCGHMH 190
           + G C SC P           +G Q ++ C P         Q  HC+H   C+ D GH  
Sbjct: 277 DTGSCESCEPG---------WNGTQCQQPCLPGTFGESCEQQCPHCRHGEACEPDTGHCQ 327

Query: 191 EV*RGQV-CACERSC 232
               G +   CE  C
Sbjct: 328 RCDPGWLGPRCEDPC 342



to top

>FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor|
          Length = 4010

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 23/78 (29%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
 Frame = +2

Query: 47   CVSCAPPRPLQPLHT--HCHGLQAKRFCYPDQPQHCK---------HVGNCQVDCGHMHE 193
            CV   PP   +   T   CH   + R C    P  C          H+G C   C   H 
Sbjct: 841  CVPECPPGHYKERGTCKTCHS--SCRSCQNGGPFSCSSCDTGLVLTHIGTCSTACFPGHY 898

Query: 194  V*RGQVC-ACERSCQATD 244
            +   QVC  C R C++ D
Sbjct: 899  LDDNQVCQPCNRHCRSCD 916



to top

>EFTS_MESFL (Q6F0Q5) Elongation factor Ts (EF-Ts)|
          Length = 297

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +3

Query: 69  DHFNHSILTVMGYKPRDFATQ---INLNTANMWGIVKSIVDICMKFEEGKYVLVKDPAKP 239
           +H N  +   + +K    +T    + ++ A M    KSI +I  +F+E ++ ++K  AK 
Sbjct: 156 NHANKRVSVALNFKGTLDSTDAYNLAMHVAAMSPQYKSIDEIPAEFKESEFSIIKAEAKE 215

Query: 240 QMRIYQVPNDAFEN 281
             ++   P +  EN
Sbjct: 216 DPKLQGKPENVLEN 229



to top

>ACSA_SYNY3 (Q55404) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA|
           ligase) (Acyl-activating enzyme)
          Length = 653

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 159 GIVKSIVDIC---MKFEEGKYVLVKDPAKPQMRIYQVPNDAFENDYVEEPLPEEEQ 317
           GIV  IVD+    ++ ++G ++++K P    +R      D F + Y E   P+E Q
Sbjct: 448 GIVAEIVDLDGNPVESDQGGFLVIKQPWPSMIRDVYGDTDRFRHTYWEHIQPKEGQ 503



to top

>AKR1_EMENI (Q5B0V6) Palmitoyltransferase akr1 (EC 2.3.1.-) (Ankyrin|
           repeat-containing protein akr1)
          Length = 737

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +2

Query: 11  FTIWRGHDEVGLCVSCAPPRPLQPLHTHCHGLQAKRFCYPDQPQHCKHVGNC 166
           F  W+  DE   CV C   RPL+    HC        C      HC  + NC
Sbjct: 447 FEEWK-FDEENFCVYCMIRRPLR--SKHCRRCSR---CVAKHDHHCPWIDNC 492



to top

>SYA_CHLAB (Q5L512) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 875

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/68 (19%), Positives = 28/68 (41%)
 Frame = +3

Query: 63  PRDHFNHSILTVMGYKPRDFATQINLNTANMWGIVKSIVDICMKFEEGKYVLVKDPAKPQ 242
           PRD   + +  ++  K        +L    ++ ++  ++D C + E+  Y +   P    
Sbjct: 721 PRDQILNKLQNILDEKKEQTKLISDLENKLIYSLLDKVIDRCQQIEDVSYFIYHLPESES 780

Query: 243 MRIYQVPN 266
            R+ Q  N
Sbjct: 781 HRLQQYAN 788



to top

>BAZ2A_HUMAN (Q9UIF9) Bromodomain adjacent to zinc finger domain 2A (Transcription|
            termination factor I-interacting protein 5)
            (TTF-I-interacting protein 5) (Tip5) (hWALp3)
          Length = 1878

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
 Frame = -1

Query: 327  PGEPAPPLEVALQHNRS------------QTHH*EPDRSSSVAWQDLSQAHTCPLQTSCI 184
            P +P P L++ LQ ++             Q+ H +  +S+ ++W   +Q+H+  L +S +
Sbjct: 1203 PAQPQPQLQLQLQSHKGFLEQEGSPLSLGQSQH-DLSQSAFLSWLSQTQSHSSLLSSSVL 1261

Query: 183  CPQST 169
             P S+
Sbjct: 1262 TPDSS 1266



to top

>ADEC_METAC (Q8TNH5) Adenine deaminase (EC 3.5.4.2) (Adenase) (Adenine aminase)|
          Length = 553

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
 Frame = +3

Query: 3   RQALLSGADMMKLGYVSRVHPRDHFNHSILTVMGYKPRDFATQINLNTANMWGIVKSIVD 182
           R+    G D+  L   + ++P +H+  ++  +    P DF T  +L + N   ++ + +D
Sbjct: 262 RRGQEKGLDIFNLIRAAVINPVEHYGLNVGLLREGDPADFITVDDLKSFN---VLSTFID 318

Query: 183 ICMKFEEGK--YVLVKDPAKPQMRIYQVPNDA 272
               +E GK  + + K PAK      ++  DA
Sbjct: 319 GECVYENGKVLFPMKKVPAKNVFNRNKISIDA 350


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,176,408
Number of Sequences: 219361
Number of extensions: 1224346
Number of successful extensions: 3936
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3934
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top