ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27d23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome... 357 2e-95
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 357 2e-95
3dbj|AK104093.1| Oryza sativa (japonica cultivar-group) cDNA clon... 357 2e-95
4dbj|AK099052.1| Oryza sativa (japonica cultivar-group) cDNA clon... 357 2e-95
5dbj|AK073468.1| Oryza sativa (japonica cultivar-group) cDNA clon... 357 2e-95
6gb|AY109827.1| Zea mays CL2592_1 mRNA sequence 248 1e-62
7gb|AY108140.1| Zea mays PCO079824 mRNA sequence 165 2e-37
8dbj|AK110353.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
9gb|BT014594.1| Lycopersicon esculentum clone 134066R, mRNA sequence 46 0.10
10emb|AL117172.1|CNS01DR0 Botrytis cinerea strain T4 cDNA library 46 0.10
11ref|NM_123799.2| Arabidopsis thaliana translation initiation fac... 44 0.41
12gb|BT008629.1| Arabidopsis thaliana clone RAFL09-94-B11 (R20081)... 44 0.41
13gb|BT008551.1| Arabidopsis thaliana clone U20081 putative eukary... 44 0.41
14dbj|AB011475.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.41
15gb|AC159381.10| Mus musculus 6 BAC RP24-460E4 (Roswell Park Canc... 42 1.6
16gb|AC112701.6| Mus musculus BAC clone RP23-171A11 from 13, compl... 42 1.6
17ref|XM_781128.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.6
18gb|AC090964.10| Papio anubis clone rp41-177g23, complete sequence 42 1.6
19gb|AC131790.4| Mus musculus BAC clone RP24-447L18 from 3, comple... 42 1.6
20ref|NM_186830.2| Oryza sativa (japonica cultivar-group), mRNA 40 6.4
21gb|BC072663.1| Mus musculus Rho guanine nucleotide exchange fact... 40 6.4
22gb|AC148022.2| Homo sapiens BAC clone RP11-1383G16 from 2, compl... 40 6.4
23gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome 40 6.4
24ref|XM_001005552.1| PREDICTED: Mus musculus similar to Rho guani... 40 6.4
25gb|AC140413.3| Mus musculus BAC clone RP23-138H4 from chromosome... 40 6.4
26gb|AC124367.4| Mus musculus BAC clone RP24-545D20 from chromosom... 40 6.4
27gb|AC122439.4| Mus musculus BAC clone RP24-222B4 from chromosome... 40 6.4
28emb|AL591506.24| Human DNA sequence from clone RP11-112N13 on ch... 40 6.4
29ref|NM_001003912.1| Mus musculus Rho guanine nucleotide exchange... 40 6.4
30gb|AY267640.1| Bigelowiella natans ribosomal protein rpL12 mRNA,... 40 6.4
31gb|AC159540.1| Homo sapiens BAC clone RP11-474M15 from 2, comple... 40 6.4
32emb|CR932800.1| Mus musculus chromosome 2, clone ResGen-169L23 s... 40 6.4
33gb|AC095047.2| Homo sapiens BAC clone RP11-219G14 from 4, comple... 40 6.4
34dbj|AK157225.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 6.4
35gb|AC161454.3| Mus musculus BAC clone RP23-332F10 from chromosom... 40 6.4
36gb|AC016657.5| Homo sapiens chromosome 5 clone RP1-6C3, complete... 40 6.4
37dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
38gb|AC092683.3| Homo sapiens BAC clone RP11-734K23 from 2, comple... 40 6.4
39gb|AC018892.8| Homo sapiens BAC clone RP11-499E14 from 2, comple... 40 6.4
40gb|AC148032.2| Homo sapiens BAC clone RP13-809J14 from 2, comple... 40 6.4
41dbj|AP003754.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
42dbj|AK109746.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
43emb|CT030660.14| Mouse DNA sequence from clone RP23-455F4 on chr... 40 6.4
44gb|BC079565.1| Mus musculus Rho guanine nucleotide exchange fact... 40 6.4
45emb|AL928877.6| Mouse DNA sequence from clone RP23-52D18 on chro... 40 6.4
46emb|AL954334.4| Mouse DNA sequence from clone RP24-93B5 on chrom... 40 6.4
47gb|AC154793.2| Mus musculus BAC clone RP23-88B6 from chromosome ... 40 6.4
48emb|AL606987.11| Mouse DNA sequence from clone RP23-383I4 on chr... 40 6.4
49emb|AL606910.14| Mouse DNA sequence from clone RP23-282C23 on ch... 40 6.4
50emb|AL606931.6| Mouse DNA sequence from clone RP23-162H3 on chro... 40 6.4 
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11,
             complete sequence
          Length = 204649

 Score =  357 bits (180), Expect = 2e-95
 Identities = 330/380 (86%)
 Strand = Plus / Minus

                                                                         
Query: 6     caggctttactatctggcgcggacatgatgaagttgggttatgtgtctcgtgtgcacccc 65
             |||||||| ||  |||| || ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 62645 caggctttgcttgctggtgctgacatgatgaagttgggatatgtgtcacgtgtgcacccc 62586

                                                                         
Query: 66    cgcgaccacttcaaccactccatactcactgtcatgggctacaagccaagagattttgct 125
             || || |||| ||||||  ||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 62585 cgtgatcactacaaccatgccatactcactgttatgggatacaagccaagggattttgct 62526

                                                                         
Query: 126   acccagatcaacctcaacactgcaaacatgtggggaattgtcaagtcgattgtggacata 185
             || |||||||||||||||||  |||||||||||||||||||||||||||| |||||||| 
Sbjct: 62525 acacagatcaacctcaacacatcaaacatgtggggaattgtcaagtcgatcgtggacatc 62466

                                                                         
Query: 186   tgcatgaagtttgaagagggcaagtatgtgcttgtgaaagatcctgccaagccacagatg 245
             |||||||||||||| ||||| |||||||||||||| |||||||| || ||||||||  ||
Sbjct: 62465 tgcatgaagtttgaggagggaaagtatgtgcttgtaaaagatccagcgaagccacaagtg 62406

                                                                         
Query: 246   aggatctatcaggttcctaatgatgcgtttgagaacgattatgttgaagagccacttcca 305
             ||||||||| |||| |||  |||||| |||||||| || ||||| |||||||||||||| 
Sbjct: 62405 aggatctatgaggtgccttctgatgcatttgagaatgactatgtggaagagccacttccg 62346

                                                                         
Query: 306   gaggaggagcaggttcgcccggctacagatgatgtcgatgctactgcacaggagatggat 365
             |||||||| |||||||| ||| |  |||||||||| |||||||| ||  |||| ||||||
Sbjct: 62345 gaggaggaacaggttcggccgccatcagatgatgttgatgctaccgcggaggaaatggat 62286

                                 
Query: 366   gctgctgctgaggcagaggc 385
             || || || ||||| |||||
Sbjct: 62285 gcagcggcagaggctgaggc 62266
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  357 bits (180), Expect = 2e-95
 Identities = 330/380 (86%)
 Strand = Plus / Minus

                                                                            
Query: 6        caggctttactatctggcgcggacatgatgaagttgggttatgtgtctcgtgtgcacccc 65
                |||||||| ||  |||| || ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 27982480 caggctttgcttgctggtgctgacatgatgaagttgggatatgtgtcacgtgtgcacccc 27982421

                                                                            
Query: 66       cgcgaccacttcaaccactccatactcactgtcatgggctacaagccaagagattttgct 125
                || || |||| ||||||  ||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 27982420 cgtgatcactacaaccatgccatactcactgttatgggatacaagccaagggattttgct 27982361

                                                                            
Query: 126      acccagatcaacctcaacactgcaaacatgtggggaattgtcaagtcgattgtggacata 185
                || |||||||||||||||||  |||||||||||||||||||||||||||| |||||||| 
Sbjct: 27982360 acacagatcaacctcaacacatcaaacatgtggggaattgtcaagtcgatcgtggacatc 27982301

                                                                            
Query: 186      tgcatgaagtttgaagagggcaagtatgtgcttgtgaaagatcctgccaagccacagatg 245
                |||||||||||||| ||||| |||||||||||||| |||||||| || ||||||||  ||
Sbjct: 27982300 tgcatgaagtttgaggagggaaagtatgtgcttgtaaaagatccagcgaagccacaagtg 27982241

                                                                            
Query: 246      aggatctatcaggttcctaatgatgcgtttgagaacgattatgttgaagagccacttcca 305
                ||||||||| |||| |||  |||||| |||||||| || ||||| |||||||||||||| 
Sbjct: 27982240 aggatctatgaggtgccttctgatgcatttgagaatgactatgtggaagagccacttccg 27982181

                                                                            
Query: 306      gaggaggagcaggttcgcccggctacagatgatgtcgatgctactgcacaggagatggat 365
                |||||||| |||||||| ||| |  |||||||||| |||||||| ||  |||| ||||||
Sbjct: 27982180 gaggaggaacaggttcggccgccatcagatgatgttgatgctaccgcggaggaaatggat 27982121

                                    
Query: 366      gctgctgctgaggcagaggc 385
                || || || ||||| |||||
Sbjct: 27982120 gcagcggcagaggctgaggc 27982101
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>dbj|AK104093.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-F02, full
            insert sequence
          Length = 1968

 Score =  357 bits (180), Expect = 2e-95
 Identities = 330/380 (86%)
 Strand = Plus / Plus

                                                                        
Query: 6    caggctttactatctggcgcggacatgatgaagttgggttatgtgtctcgtgtgcacccc 65
            |||||||| ||  |||| || ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1384 caggctttgcttgctggtgctgacatgatgaagttgggatatgtgtcacgtgtgcacccc 1443

                                                                        
Query: 66   cgcgaccacttcaaccactccatactcactgtcatgggctacaagccaagagattttgct 125
            || || |||| ||||||  ||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 1444 cgtgatcactacaaccatgccatactcactgttatgggatacaagccaagggattttgct 1503

                                                                        
Query: 126  acccagatcaacctcaacactgcaaacatgtggggaattgtcaagtcgattgtggacata 185
            || |||||||||||||||||  |||||||||||||||||||||||||||| |||||||| 
Sbjct: 1504 acacagatcaacctcaacacatcaaacatgtggggaattgtcaagtcgatcgtggacatc 1563

                                                                        
Query: 186  tgcatgaagtttgaagagggcaagtatgtgcttgtgaaagatcctgccaagccacagatg 245
            |||||||||||||| ||||| |||||||||||||| |||||||| || ||||||||  ||
Sbjct: 1564 tgcatgaagtttgaggagggaaagtatgtgcttgtaaaagatccagcgaagccacaagtg 1623

                                                                        
Query: 246  aggatctatcaggttcctaatgatgcgtttgagaacgattatgttgaagagccacttcca 305
            ||||||||| |||| |||  |||||| |||||||| || ||||| |||||||||||||| 
Sbjct: 1624 aggatctatgaggtgccttctgatgcatttgagaatgactatgtggaagagccacttccg 1683

                                                                        
Query: 306  gaggaggagcaggttcgcccggctacagatgatgtcgatgctactgcacaggagatggat 365
            |||||||| |||||||| ||| |  |||||||||| |||||||| ||  |||| ||||||
Sbjct: 1684 gaggaggaacaggttcggccgccatcagatgatgttgatgctaccgcggaggaaatggat 1743

                                
Query: 366  gctgctgctgaggcagaggc 385
            || || || ||||| |||||
Sbjct: 1744 gcagcggcagaggctgaggc 1763
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>dbj|AK099052.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145A19, full
            insert sequence
          Length = 2073

 Score =  357 bits (180), Expect = 2e-95
 Identities = 330/380 (86%)
 Strand = Plus / Plus

                                                                        
Query: 6    caggctttactatctggcgcggacatgatgaagttgggttatgtgtctcgtgtgcacccc 65
            |||||||| ||  |||| || ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1395 caggctttgcttgctggtgctgacatgatgaagttgggatatgtgtcacgtgtgcacccc 1454

                                                                        
Query: 66   cgcgaccacttcaaccactccatactcactgtcatgggctacaagccaagagattttgct 125
            || || |||| ||||||  ||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 1455 cgtgatcactacaaccatgccatactcactgttatgggatacaagccaagggattttgct 1514

                                                                        
Query: 126  acccagatcaacctcaacactgcaaacatgtggggaattgtcaagtcgattgtggacata 185
            || |||||||||||||||||  |||||||||||||||||||||||||||| |||||||| 
Sbjct: 1515 acacagatcaacctcaacacatcaaacatgtggggaattgtcaagtcgatcgtggacatc 1574

                                                                        
Query: 186  tgcatgaagtttgaagagggcaagtatgtgcttgtgaaagatcctgccaagccacagatg 245
            |||||||||||||| ||||| |||||||||||||| |||||||| || ||||||||  ||
Sbjct: 1575 tgcatgaagtttgaggagggaaagtatgtgcttgtaaaagatccagcgaagccacaagtg 1634

                                                                        
Query: 246  aggatctatcaggttcctaatgatgcgtttgagaacgattatgttgaagagccacttcca 305
            ||||||||| |||| |||  |||||| |||||||| || ||||| |||||||||||||| 
Sbjct: 1635 aggatctatgaggtgccttctgatgcatttgagaatgactatgtggaagagccacttccg 1694

                                                                        
Query: 306  gaggaggagcaggttcgcccggctacagatgatgtcgatgctactgcacaggagatggat 365
            |||||||| |||||||| ||| |  |||||||||| |||||||| ||  |||| ||||||
Sbjct: 1695 gaggaggaacaggttcggccgccatcagatgatgttgatgctaccgcggaggaaatggat 1754

                                
Query: 366  gctgctgctgaggcagaggc 385
            || || || ||||| |||||
Sbjct: 1755 gcagcggcagaggctgaggc 1774
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>dbj|AK073468.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046G07, full
            insert sequence
          Length = 2002

 Score =  357 bits (180), Expect = 2e-95
 Identities = 330/380 (86%)
 Strand = Plus / Plus

                                                                        
Query: 6    caggctttactatctggcgcggacatgatgaagttgggttatgtgtctcgtgtgcacccc 65
            |||||||| ||  |||| || ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1423 caggctttgcttgctggtgctgacatgatgaagttgggatatgtgtcacgtgtgcacccc 1482

                                                                        
Query: 66   cgcgaccacttcaaccactccatactcactgtcatgggctacaagccaagagattttgct 125
            || || |||| ||||||  ||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 1483 cgtgatcactacaaccatgccatactcactgttatgggatacaagccaagggattttgct 1542

                                                                        
Query: 126  acccagatcaacctcaacactgcaaacatgtggggaattgtcaagtcgattgtggacata 185
            || |||||||||||||||||  |||||||||||||||||||||||||||| |||||||| 
Sbjct: 1543 acacagatcaacctcaacacatcaaacatgtggggaattgtcaagtcgatcgtggacatc 1602

                                                                        
Query: 186  tgcatgaagtttgaagagggcaagtatgtgcttgtgaaagatcctgccaagccacagatg 245
            |||||||||||||| ||||| |||||||||||||| |||||||| || ||||||||  ||
Sbjct: 1603 tgcatgaagtttgaggagggaaagtatgtgcttgtaaaagatccagcgaagccacaagtg 1662

                                                                        
Query: 246  aggatctatcaggttcctaatgatgcgtttgagaacgattatgttgaagagccacttcca 305
            ||||||||| |||| |||  |||||| |||||||| || ||||| |||||||||||||| 
Sbjct: 1663 aggatctatgaggtgccttctgatgcatttgagaatgactatgtggaagagccacttccg 1722

                                                                        
Query: 306  gaggaggagcaggttcgcccggctacagatgatgtcgatgctactgcacaggagatggat 365
            |||||||| |||||||| ||| |  |||||||||| |||||||| ||  |||| ||||||
Sbjct: 1723 gaggaggaacaggttcggccgccatcagatgatgttgatgctaccgcggaggaaatggat 1782

                                
Query: 366  gctgctgctgaggcagaggc 385
            || || || ||||| |||||
Sbjct: 1783 gcagcggcagaggctgaggc 1802
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>gb|AY109827.1| Zea mays CL2592_1 mRNA sequence
          Length = 889

 Score =  248 bits (125), Expect = 1e-62
 Identities = 167/181 (92%)
 Strand = Plus / Minus

                                                                       
Query: 146 tgcaaacatgtggggaattgtcaagtcgattgtggacatatgcatgaagtttgaagaggg 205
           |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 530 tgcaaacatgtggggaatcgtcaagtcaattgtggacatctgcatgaagtttgaagaggg 471

                                                                       
Query: 206 caagtatgtgcttgtgaaagatcctgccaagccacagatgaggatctatcaggttcctaa 265
           |||||||||| |||| |||||||| || ||||||||| ||||||||||| |||| ||   
Sbjct: 470 caagtatgtgtttgtcaaagatccagcaaagccacagttgaggatctatgaggtaccatc 411

                                                                       
Query: 266 tgatgcgtttgagaacgattatgttgaagagccacttccagaggaggagcaggttcgccc 325
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgatgcgtttgagaatgattatgttgaagagccacttccagaggaggagcaggttcgccc 351

            
Query: 326 g 326
           |
Sbjct: 350 g 350



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 6   caggctttactatctggcgcggacatgatgaagttgggttatgtgtc 52
           |||||||| ||  |||| || ||||||||||||||||| ||||||||
Sbjct: 670 caggctttgcttgctggtgctgacatgatgaagttgggctatgtgtc 624
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>gb|AY108140.1| Zea mays PCO079824 mRNA sequence
          Length = 986

 Score =  165 bits (83), Expect = 2e-37
 Identities = 173/203 (85%)
 Strand = Plus / Plus

                                                                       
Query: 21  ggcgcggacatgatgaagttgggttatgtgtctcgtgtgcacccccgcgaccacttcaac 80
           ||||| |||||||||||||||||||||||||| ||  ||||||| |||||||| | ||||
Sbjct: 270 ggcgcagacatgatgaagttgggttatgtgtcacggctgcacccacgcgaccagtacaac 329

                                                                       
Query: 81  cactccatactcactgtcatgggctacaagccaagagattttgctacccagatcaacctc 140
           || ||||| |||| ||| || || ||||||||||| ||||| ||| | |||||||| |||
Sbjct: 330 cattccattctcagtgtgatcgggtacaagccaagggatttcgctgcacagatcaatctc 389

                                                                       
Query: 141 aacactgcaaacatgtggggaattgtcaagtcgattgtggacatatgcatgaagtttgaa 200
           ||||| ||||| |||||||| || || ||||| ||||||||  | ||||||||| ||| |
Sbjct: 390 aacaccgcaaatatgtgggggatcgtgaagtctattgtggatgtctgcatgaagcttgga 449

                                  
Query: 201 gagggcaagtatgtgcttgtgaa 223
           ||||| |||||||||||||||||
Sbjct: 450 gaggggaagtatgtgcttgtgaa 472
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>dbj|AK110353.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-164-H09, full
           insert sequence
          Length = 3907

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 361 tggatgctgctgctgaggcagaggc 385
           |||||||||||||||||||||||||
Sbjct: 282 tggatgctgctgctgaggcagaggc 306
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>gb|BT014594.1| Lycopersicon esculentum clone 134066R, mRNA sequence
          Length = 2028

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                   
Query: 267  gatgcgtttgagaacgattatgttgaagagccacttccagaggaggagcaggttc 321
            |||||||||||||| || |||||||| |||||| | ||||| || || |||||||
Sbjct: 1670 gatgcgtttgagaatgactatgttgaggagccattgccagaagatgaacaggttc 1724



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 30   atgatgaagttgggttatgt 49
            ||||||||||||||||||||
Sbjct: 1433 atgatgaagttgggttatgt 1452
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>emb|AL117172.1|CNS01DR0 Botrytis cinerea strain T4 cDNA library
          Length = 580

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 197 tgaagagggcaagtatgtgcttgtgaaagatcctgccaagcca 239
           ||||||||||||||| || ||||| |||||||||  |||||||
Sbjct: 298 tgaagagggcaagtacgtacttgtcaaagatcctaacaagcca 340
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>ref|NM_123799.2| Arabidopsis thaliana translation initiation factor AT5G44320 mRNA,
            complete cds
          Length = 2092

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 153  atgtggggaattgtcaagtcgattgt 178
            |||||||||||||| |||||||||||
Sbjct: 1514 atgtggggaattgtgaagtcgattgt 1539
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>gb|BT008629.1| Arabidopsis thaliana clone RAFL09-94-B11 (R20081) putative eukaryotic
            translation initiation factor 3 subunit 7 (At5g44320)
            mRNA, complete cds
          Length = 1904

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 153  atgtggggaattgtcaagtcgattgt 178
            |||||||||||||| |||||||||||
Sbjct: 1505 atgtggggaattgtgaagtcgattgt 1530
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>gb|BT008551.1| Arabidopsis thaliana clone U20081 putative eukaryotic translation
            initiation factor 3 subunit 7 (At5g44320) mRNA, complete
            cds
          Length = 1798

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 153  atgtggggaattgtcaagtcgattgt 178
            |||||||||||||| |||||||||||
Sbjct: 1501 atgtggggaattgtgaagtcgattgt 1526
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>dbj|AB011475.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9L2
          Length = 60583

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 153   atgtggggaattgtcaagtcgattgt 178
             |||||||||||||| |||||||||||
Sbjct: 29195 atgtggggaattgtgaagtcgattgt 29170
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>gb|AC159381.10| Mus musculus 6 BAC RP24-460E4 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 211463

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 354    caggagatggatgctgctgct 374
              |||||||||||||||||||||
Sbjct: 105498 caggagatggatgctgctgct 105518
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>gb|AC112701.6| Mus musculus BAC clone RP23-171A11 from 13, complete sequence
          Length = 184506

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 412   acggtgagaagactgcagatgctgc 436
             ||||||| |||||||||||||||||
Sbjct: 72457 acggtgataagactgcagatgctgc 72481
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>ref|XM_781128.1| PREDICTED: Strongylocentrotus purpuratus similar to CG16779-PA
            (LOC581111), mRNA
          Length = 5388

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 365  tgctgctgctgaggcagaggc 385
            |||||||||||||||||||||
Sbjct: 3888 tgctgctgctgaggcagaggc 3868
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>gb|AC090964.10| Papio anubis clone rp41-177g23, complete sequence
          Length = 182747

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 354    caggagatggatgctgctgct 374
              |||||||||||||||||||||
Sbjct: 168904 caggagatggatgctgctgct 168884
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>gb|AC131790.4| Mus musculus BAC clone RP24-447L18 from 3, complete sequence
          Length = 170634

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 143  cactgcaaacatgtggggaat 163
            |||||||||||||||||||||
Sbjct: 4706 cactgcaaacatgtggggaat 4726
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>ref|NM_186830.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1739

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  agaggaggagcaggttcgcc 324
            ||||||||||||||||||||
Sbjct: 1175 agaggaggagcaggttcgcc 1156
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>gb|BC072663.1| Mus musculus Rho guanine nucleotide exchange factor (GEF) 11, mRNA
            (cDNA clone IMAGE:30543430), partial cds
          Length = 6149

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  atggatgctgctgctgaggc 379
            ||||||||||||||||||||
Sbjct: 2538 atggatgctgctgctgaggc 2557
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>gb|AC148022.2| Homo sapiens BAC clone RP11-1383G16 from 2, complete sequence
          Length = 181750

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 299   acttccagaggaggagcagg 318
             ||||||||||||||||||||
Sbjct: 14276 acttccagaggaggagcagg 14295
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>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome
          Length = 1545895

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 239     acagatgaggatctatcagg 258
               ||||||||||||||||||||
Sbjct: 1105289 acagatgaggatctatcagg 1105308
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>ref|XM_001005552.1| PREDICTED: Mus musculus similar to Rho guanine nucleotide exchange
           factor (GEF) 11 (LOC673422), mRNA
          Length = 1660

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 360 atggatgctgctgctgaggc 379
           ||||||||||||||||||||
Sbjct: 173 atggatgctgctgctgaggc 192
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>gb|AC140413.3| Mus musculus BAC clone RP23-138H4 from chromosome 19, complete sequence
          Length = 202504

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 364    atgctgctgctgaggcagag 383
              ||||||||||||||||||||
Sbjct: 125596 atgctgctgctgaggcagag 125577
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>gb|AC124367.4| Mus musculus BAC clone RP24-545D20 from chromosome 18, complete
             sequence
          Length = 169912

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 353   acaggagatggatgctgctg 372
             ||||||||||||||||||||
Sbjct: 73804 acaggagatggatgctgctg 73785
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>gb|AC122439.4| Mus musculus BAC clone RP24-222B4 from chromosome 3, complete sequence
          Length = 159703

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 360    atggatgctgctgctgaggc 379
              ||||||||||||||||||||
Sbjct: 134580 atggatgctgctgctgaggc 134561
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>emb|AL591506.24| Human DNA sequence from clone RP11-112N13 on chromosome 9 Contains a
             pseudogene similar to reverse transcriptase proteins,
             complete sequence
          Length = 175831

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 414   ggtgagaagactgcagatgc 433
             ||||||||||||||||||||
Sbjct: 92508 ggtgagaagactgcagatgc 92527
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>ref|NM_001003912.1| Mus musculus Rho guanine nucleotide exchange factor (GEF) 11
            (Arhgef11), mRNA
          Length = 5617

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  atggatgctgctgctgaggc 379
            ||||||||||||||||||||
Sbjct: 2015 atggatgctgctgctgaggc 2034
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>gb|AY267640.1| Bigelowiella natans ribosomal protein rpL12 mRNA, partial cds;
           nuclear gene for plastid product
          Length = 593

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 365 tgctgctgctgaggcagaggctaa 388
           |||||||||||||| |||||||||
Sbjct: 217 tgctgctgctgaggaagaggctaa 240
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>gb|AC159540.1| Homo sapiens BAC clone RP11-474M15 from 2, complete sequence
          Length = 173191

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    acttccagaggaggagcagg 318
              ||||||||||||||||||||
Sbjct: 141698 acttccagaggaggagcagg 141717



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    acttccagaggaggagcagg 318
              ||||||||||||||||||||
Sbjct: 110992 acttccagaggaggagcagg 110973
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>emb|CR932800.1| Mus musculus chromosome 2, clone ResGen-169L23 strain 129/Sv, complete
             sequence
          Length = 124093

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   ctgctgctgaggcagaggct 386
             ||||||||||||||||||||
Sbjct: 75597 ctgctgctgaggcagaggct 75578
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>gb|AC095047.2| Homo sapiens BAC clone RP11-219G14 from 4, complete sequence
          Length = 72660

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    tgaagttgggttatgtgtct 53
             ||||||||||||||||||||
Sbjct: 45280 tgaagttgggttatgtgtct 45299
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>dbj|AK157225.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830207D02 product:Rho guanine nucleotide
            exchange factor (GEF) 11, full insert sequence
          Length = 5618

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  atggatgctgctgctgaggc 379
            ||||||||||||||||||||
Sbjct: 3109 atggatgctgctgctgaggc 3128
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>gb|AC161454.3| Mus musculus BAC clone RP23-332F10 from chromosome 3, complete sequence
          Length = 228486

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 360    atggatgctgctgctgaggc 379
              ||||||||||||||||||||
Sbjct: 150199 atggatgctgctgctgaggc 150180
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>gb|AC016657.5| Homo sapiens chromosome 5 clone RP1-6C3, complete sequence
          Length = 128447

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 363    gatgctgctgctgaggcaga 382
              ||||||||||||||||||||
Sbjct: 118712 gatgctgctgctgaggcaga 118693
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 305     agaggaggagcaggttcgcc 324
               ||||||||||||||||||||
Sbjct: 8065457 agaggaggagcaggttcgcc 8065476
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>gb|AC092683.3| Homo sapiens BAC clone RP11-734K23 from 2, complete sequence
          Length = 174105

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    acttccagaggaggagcagg 318
              ||||||||||||||||||||
Sbjct: 100719 acttccagaggaggagcagg 100738



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   acttccagaggaggagcagg 318
             ||||||||||||||||||||
Sbjct: 70013 acttccagaggaggagcagg 69994
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>gb|AC018892.8| Homo sapiens BAC clone RP11-499E14 from 2, complete sequence
          Length = 191055

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 299   acttccagaggaggagcagg 318
             ||||||||||||||||||||
Sbjct: 18361 acttccagaggaggagcagg 18380
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>gb|AC148032.2| Homo sapiens BAC clone RP13-809J14 from 2, complete sequence
          Length = 155256

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    acttccagaggaggagcagg 318
              ||||||||||||||||||||
Sbjct: 153514 acttccagaggaggagcagg 153495
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>dbj|AP003754.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1341_A08
          Length = 128955

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 305    agaggaggagcaggttcgcc 324
              ||||||||||||||||||||
Sbjct: 103654 agaggaggagcaggttcgcc 103673
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>dbj|AK109746.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-F02, full
            insert sequence
          Length = 1739

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  agaggaggagcaggttcgcc 324
            ||||||||||||||||||||
Sbjct: 1175 agaggaggagcaggttcgcc 1156
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>emb|CT030660.14| Mouse DNA sequence from clone RP23-455F4 on chromosome 13, complete
             sequence
          Length = 174127

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   atgctactgcacaggagatg 362
             ||||||||||||||||||||
Sbjct: 92099 atgctactgcacaggagatg 92118
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>gb|BC079565.1| Mus musculus Rho guanine nucleotide exchange factor (GEF) 11, mRNA
            (cDNA clone MGC:90827 IMAGE:30536257), complete cds
          Length = 5617

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  atggatgctgctgctgaggc 379
            ||||||||||||||||||||
Sbjct: 2015 atggatgctgctgctgaggc 2034
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>emb|AL928877.6| Mouse DNA sequence from clone RP23-52D18 on chromosome 2, complete
              sequence
          Length = 201120

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 367    ctgctgctgaggcagaggct 386
              ||||||||||||||||||||
Sbjct: 162255 ctgctgctgaggcagaggct 162236
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>emb|AL954334.4| Mouse DNA sequence from clone RP24-93B5 on chromosome 4, complete
             sequence
          Length = 125201

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   tgtgcttgtgaaagatcctg 231
             ||||||||||||||||||||
Sbjct: 74936 tgtgcttgtgaaagatcctg 74917
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>gb|AC154793.2| Mus musculus BAC clone RP23-88B6 from chromosome 13, complete sequence
          Length = 182356

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 343    atgctactgcacaggagatg 362
              ||||||||||||||||||||
Sbjct: 142753 atgctactgcacaggagatg 142734
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>emb|AL606987.11| Mouse DNA sequence from clone RP23-383I4 on chromosome 4, complete
              sequence
          Length = 212647

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    tgtgcttgtgaaagatcctg 231
              ||||||||||||||||||||
Sbjct: 146820 tgtgcttgtgaaagatcctg 146839
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>emb|AL606910.14| Mouse DNA sequence from clone RP23-282C23 on chromosome 4, complete
             sequence
          Length = 185210

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   tgtgcttgtgaaagatcctg 231
             ||||||||||||||||||||
Sbjct: 76780 tgtgcttgtgaaagatcctg 76799
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>emb|AL606931.6| Mouse DNA sequence from clone RP23-162H3 on chromosome 4, complete
             sequence
          Length = 108136

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   tgtgcttgtgaaagatcctg 231
             ||||||||||||||||||||
Sbjct: 64277 tgtgcttgtgaaagatcctg 64258


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,814,972
Number of Sequences: 3902068
Number of extensions: 4814972
Number of successful extensions: 81305
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81177
Number of HSP's gapped (non-prelim): 128
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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