ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27d19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 155 bits (78), Expect = 2e-34 Identities = 99/106 (93%) Strand = Plus / Minus Query: 2 cggaacctcaacacaatgattggcagagcagcccacatagaattcctggagactgacatc 61 |||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 3296170 cggaacctaaacaccatgattggcagagcagcgcacatagagttcctggagactgacatc 3296111 Query: 62 tacgccaagttcatcatgtggtccttccctgaactattccgatgac 107 ||||||||||| ||||||||||||||||||||||| || ||||||| Sbjct: 3296110 tacgccaagtttatcatgtggtccttccctgaactttttcgatgac 3296065 Score = 75.8 bits (38), Expect = 1e-10 Identities = 89/101 (88%), Gaps = 5/101 (4%) Strand = Plus / Minus Query: 228 ttcgtcaccaagatggatagcactgtaaagttgcctagcagtaac-attttgccagtttg 286 |||| ||||||||| | ||||||||||||||| |||||||||||| ||||| |||| || Sbjct: 3295968 ttcgacaccaagattggtagcactgtaaagtt-cctagcagtaacgatttttccagcctg 3295910 Query: 287 ttagatttgatttgtataaatagtc--gatttgttcatttc 325 |||||||||| |||||||||||||| ||||| |||||||| Sbjct: 3295909 ttagatttga-ttgtataaatagtcctgatttcttcatttc 3295870 Score = 42.1 bits (21), Expect = 1.7 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Minus Query: 431 gagcttatgtcaaa-taagcatgacatgtgttt 462 |||||||||||||| ||||||||| |||||||| Sbjct: 3295769 gagcttatgtcaaaataagcatgatatgtgttt 3295737
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 155 bits (78), Expect = 2e-34 Identities = 99/106 (93%) Strand = Plus / Minus Query: 2 cggaacctcaacacaatgattggcagagcagcccacatagaattcctggagactgacatc 61 |||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 3296115 cggaacctaaacaccatgattggcagagcagcgcacatagagttcctggagactgacatc 3296056 Query: 62 tacgccaagttcatcatgtggtccttccctgaactattccgatgac 107 ||||||||||| ||||||||||||||||||||||| || ||||||| Sbjct: 3296055 tacgccaagtttatcatgtggtccttccctgaactttttcgatgac 3296010 Score = 75.8 bits (38), Expect = 1e-10 Identities = 89/101 (88%), Gaps = 5/101 (4%) Strand = Plus / Minus Query: 228 ttcgtcaccaagatggatagcactgtaaagttgcctagcagtaac-attttgccagtttg 286 |||| ||||||||| | ||||||||||||||| |||||||||||| ||||| |||| || Sbjct: 3295913 ttcgacaccaagattggtagcactgtaaagtt-cctagcagtaacgatttttccagcctg 3295855 Query: 287 ttagatttgatttgtataaatagtc--gatttgttcatttc 325 |||||||||| |||||||||||||| ||||| |||||||| Sbjct: 3295854 ttagatttga-ttgtataaatagtcctgatttcttcatttc 3295815 Score = 42.1 bits (21), Expect = 1.7 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Minus Query: 431 gagcttatgtcaa-ataagcatgacatgtgttt 462 ||||||||||||| |||||||||| |||||||| Sbjct: 3295714 gagcttatgtcaaaataagcatgatatgtgttt 3295682
>emb|AL713936.4|CNS07YPH Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109081 Score = 155 bits (78), Expect = 2e-34 Identities = 99/106 (93%) Strand = Plus / Minus Query: 2 cggaacctcaacacaatgattggcagagcagcccacatagaattcctggagactgacatc 61 |||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 86556 cggaacctaaacaccatgattggcagagcagcgcacatagagttcctggagactgacatc 86497 Query: 62 tacgccaagttcatcatgtggtccttccctgaactattccgatgac 107 ||||||||||| ||||||||||||||||||||||| || ||||||| Sbjct: 86496 tacgccaagtttatcatgtggtccttccctgaactttttcgatgac 86451 Score = 75.8 bits (38), Expect = 1e-10 Identities = 89/101 (88%), Gaps = 5/101 (4%) Strand = Plus / Minus Query: 228 ttcgtcaccaagatggatagcactgtaaagttgcctagcagtaac-attttgccagtttg 286 |||| ||||||||| | ||||||||||||||| |||||||||||| ||||| |||| || Sbjct: 86354 ttcgacaccaagattggtagcactgtaaagtt-cctagcagtaacgatttttccagcctg 86296 Query: 287 ttagatttgatttgtataaatagtc--gatttgttcatttc 325 |||||||||| |||||||||||||| ||||| |||||||| Sbjct: 86295 ttagatttga-ttgtataaatagtcctgatttcttcatttc 86256 Score = 42.1 bits (21), Expect = 1.7 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Minus Query: 431 gagcttatgtcaaa-taagcatgacatgtgttt 462 |||||||||||||| ||||||||| |||||||| Sbjct: 86155 gagcttatgtcaaaataagcatgatatgtgttt 86123
>gb|AY106229.1| Zea mays PCO149655 mRNA sequence Length = 1170 Score = 131 bits (66), Expect = 2e-27 Identities = 96/106 (90%) Strand = Plus / Plus Query: 2 cggaacctcaacacaatgattggcagagcagcccacatagaattcctggagactgacatc 61 |||| ||| ||||| ||||||||||| ||||||||||| || ||||| ||||| |||||| Sbjct: 631 cggagcctgaacaccatgattggcagggcagcccacatcgagttccttgagaccgacatc 690 Query: 62 tacgccaagttcatcatgtggtccttccctgaactattccgatgac 107 |||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 691 tacgccaagttcatcatgtggtccttccctgacctgttccgatgac 736
>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence Length = 154441 Score = 79.8 bits (40), Expect = 8e-12 Identities = 79/92 (85%) Strand = Plus / Minus Query: 2 cggaacctcaacacaatgattggcagagcagcccacatagaattcctggagactgacatc 61 |||| ||||||||| ||||| || ||||| || ||||| || |||||||||| ||| | Sbjct: 73752 cggagcctcaacaccatgatcgggagagctgctcacatcgagttcctggagaatgatttg 73693 Query: 62 tacgccaagttcatcatgtggtccttccctga 93 ||||||| |||||||||||||||||||||||| Sbjct: 73692 tacgccaggttcatcatgtggtccttccctga 73661
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 79.8 bits (40), Expect = 8e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 2 cggaacctcaacacaatgattggcagagcagcccacatagaattcctggagactgacatc 61 |||| ||||||||| ||||| || ||||| || ||||| || |||||||||| ||| | Sbjct: 3241233 cggagcctcaacaccatgatcgggagagctgctcacatcgagttcctggagaatgatttg 3241292 Query: 62 tacgccaagttcatcatgtggtccttccctga 93 ||||||| |||||||||||||||||||||||| Sbjct: 3241293 tacgccaggttcatcatgtggtccttccctga 3241324
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 79.8 bits (40), Expect = 8e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 2 cggaacctcaacacaatgattggcagagcagcccacatagaattcctggagactgacatc 61 |||| ||||||||| ||||| || ||||| || ||||| || |||||||||| ||| | Sbjct: 3249938 cggagcctcaacaccatgatcgggagagctgctcacatcgagttcctggagaatgatttg 3249997 Query: 62 tacgccaagttcatcatgtggtccttccctga 93 ||||||| |||||||||||||||||||||||| Sbjct: 3249998 tacgccaggttcatcatgtggtccttccctga 3250029
>ref|XM_705137.1| Candida albicans SC5314 putative rRNA methyltransferase (CaO19.7727), mRNA Length = 2562 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Plus Query: 102 gatgacgatgaccatgaccatgac 125 |||||||||||||||||||||||| Sbjct: 880 gatgacgatgaccatgaccatgac 903
>gb|AY560019.1| Thlaspi goesingense metal tolerance protein 1 variant c (MTP1) gene, MTP1-c allele, complete cds Length = 1191 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 103 atgacgatgaccatgaccatgactatg 129 ||||| ||||||||||||||||||||| Sbjct: 570 atgaccatgaccatgaccatgactatg 544
>gb|AY560017.1| Thlaspi goesingense metal tolerance protein 1 variant a (MTP1) gene, MTP1-a allele, complete cds Length = 1173 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 103 atgacgatgaccatgaccatgactatg 129 ||||| ||||||||||||||||||||| Sbjct: 570 atgaccatgaccatgaccatgactatg 544
>gb|AC157815.9| Mus musculus chromosome 3, clone RP24-175G5, complete sequence Length = 170361 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 103 atgacgatgaccatgaccatgactatg 129 ||||||||||| ||||||||||||||| Sbjct: 132113 atgacgatgacgatgaccatgactatg 132139 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 101 cgatgacgatgaccatgaccatgac 125 ||||||||||||||||||| ||||| Sbjct: 132117 cgatgacgatgaccatgactatgac 132141
>gb|AY044453.2| Thlaspi goesingense putative vacuolar metal-ion transport protein MTP1t1 (MTP1) mRNA, complete cds Length = 1179 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 103 atgacgatgaccatgaccatgactatg 129 ||||| ||||||||||||||||||||| Sbjct: 570 atgaccatgaccatgaccatgactatg 544
>gb|AY044452.2| Thlaspi goesingense putative vacuolar metal-ion transport protein MTP1 (MTP1) gene, complete cds Length = 1179 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 103 atgacgatgaccatgaccatgactatg 129 ||||| ||||||||||||||||||||| Sbjct: 570 atgaccatgaccatgaccatgactatg 544
>gb|AY680385.1| Picea glauca homeobox transcription factor KN3 (Kn3) gene, exons 1, 2, 3 and partial cds Length = 1521 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 103 atgacgatgaccatgaccatgactat 128 ||||| |||||||||||||||||||| Sbjct: 272 atgaccatgaccatgaccatgactat 247
>dbj|AB228353.1| Aspergillus oryzae cDNA, contig sequence: AoEST5226 Length = 536 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 94 actattccgatgacgatgacca 115 |||||||||||||||||||||| Sbjct: 305 actattccgatgacgatgacca 326
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 Length = 2324132 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 94 actattccgatgacgatgacca 115 |||||||||||||||||||||| Sbjct: 888420 actattccgatgacgatgacca 888399
>dbj|AB076248.1| Mus musculus DNA, BAC clone:No.251,465 Length = 158570 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 105 gacgatgaccatgaccatgact 126 |||||||||||||||||||||| Sbjct: 2236 gacgatgaccatgaccatgact 2257
>emb|AL645531.10| Mouse DNA sequence from clone RP23-191E19 on chromosome 4, complete sequence Length = 97801 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 105 gacgatgaccatgaccatgact 126 |||||||||||||||||||||| Sbjct: 18327 gacgatgaccatgaccatgact 18348
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 109 atgaccatgaccatgactatg 129 ||||||||||||||||||||| Sbjct: 1267368 atgaccatgaccatgactatg 1267388
>gb|AY483144.1| Noccaea fendleri heavy metal transporter MTP1 mRNA, complete cds Length = 1179 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 atgaccatgaccatgactatg 129 ||||||||||||||||||||| Sbjct: 564 atgaccatgaccatgactatg 544
>gb|AY483146.1| Thlaspi caerulescens heavy metal transporter MTP1 mRNA, complete cds Length = 1191 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 atgaccatgaccatgactatg 129 ||||||||||||||||||||| Sbjct: 564 atgaccatgaccatgactatg 544
>gb|AY560018.1| Thlaspi goesingense metal tolerance protein 1 variant b (MTP1) gene, MTP1-b allele, complete cds Length = 1173 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 atgaccatgaccatgactatg 129 ||||||||||||||||||||| Sbjct: 564 atgaccatgaccatgactatg 544
>ref|XM_743057.1| Aspergillus fumigatus Af293 GPI anchored protein (Afu5g01920) partial mRNA Length = 618 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 101 cgatgacgatgaccatgaccatgac 125 |||||| |||||||||||||||||| Sbjct: 285 cgatgatgatgaccatgaccatgac 309
>emb|CR626905.5| Zebrafish DNA sequence from clone DKEY-85H21 in linkage group 15, complete sequence Length = 201465 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 cagtttgttagatttgatttg 300 ||||||||||||||||||||| Sbjct: 164509 cagtttgttagatttgatttg 164529
>emb|AJ704808.1| Arabidopsis lyrata subsp. petraea partial mRNA for putative zinc transport protein MTP1-2 Length = 256 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 atgaccatgaccatgactatg 129 ||||||||||||||||||||| Sbjct: 183 atgaccatgaccatgactatg 163
>ref|XM_572127.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 2676 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 atgaccatgaccatgactatg 129 ||||||||||||||||||||| Sbjct: 2241 atgaccatgaccatgactatg 2221
>gb|AF275750.1|AF275750 Thlaspi caerulescens zinc transporter (ZTP1) mRNA, complete cds Length = 1353 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 atgaccatgaccatgactatg 129 ||||||||||||||||||||| Sbjct: 614 atgaccatgaccatgactatg 594
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 103 atgacgatgaccatgaccatgacta 127 ||||| ||||||||||||||||||| Sbjct: 22761993 atgaccatgaccatgaccatgacta 22761969
>dbj|AB117520.1| Filobasidiella neoformans Cnfkh1 mRNA for fork head domain protein, complete cds Length = 3055 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 atgaccatgaccatgactatg 129 ||||||||||||||||||||| Sbjct: 2580 atgaccatgaccatgactatg 2560
>dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0633E08 Length = 136471 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 103 atgacgatgaccatgaccatgacta 127 ||||| ||||||||||||||||||| Sbjct: 48944 atgaccatgaccatgaccatgacta 48920
>gb|AY311490.1| Thlaspi caerulescens cation-efflux transporter (CET1) mRNA, complete cds Length = 1191 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 atgaccatgaccatgactatg 129 ||||||||||||||||||||| Sbjct: 564 atgaccatgaccatgactatg 544
>gb|L03382.1|RATPHOLA02 Rat phospholamban gene exon 2, complete cds Length = 1786 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 101 cgatgacgatgaccatgaccatgac 125 ||||||||||||||||||| ||||| Sbjct: 1461 cgatgacgatgaccatgacgatgac 1485
>ref|NM_110992.1| Arabidopsis thaliana aldose 1-epimerase AT3G01260 mRNA, complete cds Length = 1205 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 101 cgatgacgatgaccatgaccatga 124 ||||||||||||||||||| |||| Sbjct: 156 cgatgacgatgaccatgacgatga 179
>ref|XM_635835.1| Dictyostelium discoideum hypothetical protein (DDB0204126), partial mRNA Length = 8193 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 gatgacgatgaccatgaccatgac 125 |||||| ||||||||||||||||| Sbjct: 2083 gatgaccatgaccatgaccatgac 2060
>ref|XM_705132.1| Candida albicans SC5314 putative rRNA methyltransferase (CaO19.76), mRNA Length = 2538 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 gatgacgatgaccatgacca 121 |||||||||||||||||||| Sbjct: 880 gatgacgatgaccatgacca 899
>gb|AC008261.5|ATAC008261 Arabidopsis thaliana chromosome III BAC T4P13 genomic sequence, complete sequence Length = 93735 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 101 cgatgacgatgaccatgaccatga 124 ||||||||||||||||||| |||| Sbjct: 15369 cgatgacgatgaccatgacgatga 15392
>gb|AC010676.6|ATAC010676 Arabidopsis thaliana chromosome III BAC T22N4 genomic sequence, complete sequence Length = 58448 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 101 cgatgacgatgaccatgaccatga 124 ||||||||||||||||||| |||| Sbjct: 57015 cgatgacgatgaccatgacgatga 57038
>gb|AC101797.5| Mus musculus chromosome 1, clone RP24-211O21, complete sequence Length = 169292 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 tgcctagcagtaacattttg 278 |||||||||||||||||||| Sbjct: 95687 tgcctagcagtaacattttg 95668
>emb|CR812472.9| Zebrafish DNA sequence from clone DKEY-110G7 in linkage group 3, complete sequence Length = 194804 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tggtgtggtgtattttaggg 396 |||||||||||||||||||| Sbjct: 178773 tggtgtggtgtattttaggg 178792
>emb|AL662920.14| Mouse DNA sequence from clone RP23-98M4 on chromosome 1 Contains part of the gene for ortholog of human amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 19 (ALS2CR19) and a novel gene, complete sequence Length = 146582 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 tgcctagcagtaacattttg 278 |||||||||||||||||||| Sbjct: 113017 tgcctagcagtaacattttg 113036
>gb|AF452375.2| Rhodococcus aetherivorans strain I24 cosmid 3H1, partial sequence Length = 6437 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 gatgacgatgaccatgaccatgac 125 |||||| ||||||||||||||||| Sbjct: 1037 gatgaccatgaccatgaccatgac 1014
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 atgaccatgaccatgactatgctc 132 ||||||||||||||||| |||||| Sbjct: 110414 atgaccatgaccatgaccatgctc 110437
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 gatgacgatgaccatgaccatgac 125 |||||| ||||||||||||||||| Sbjct: 375244 gatgaccatgaccatgaccatgac 375267
>gb|AE012054.1| Xanthomonas axonopodis pv. citri str. 306, section 432 of 469 of the complete genome Length = 14572 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 gatgacgatgaccatgaccatgac 125 |||||| ||||||||||||||||| Sbjct: 8786 gatgaccatgaccatgaccatgac 8763 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 atgacgatgaccatgaccatgact 126 ||||| |||||||||||||||||| Sbjct: 8749 atgaccatgaccatgaccatgact 8726
>ref|XM_627337.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_4510), partial mRNA Length = 3237 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 103 atgacgatgaccatgaccatgactatgc 130 ||||| ||||||||||||||||| |||| Sbjct: 738 atgaccatgaccatgaccatgaccatgc 711
>gb|AC007836.5|AC007836 Drosophila melanogaster, chromosome 2R, region 50F-51C, BAC clone BACR06D02, complete sequence Length = 172791 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 gatgacgatgaccatgacca 121 |||||||||||||||||||| Sbjct: 33264 gatgacgatgaccatgacca 33283
>gb|AC026480.6|AC026480 Arabidopsis thaliana chromosome 1 BAC F15E12 genomic sequence, complete sequence Length = 90248 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 101 cgatgacgatgaccatgaccatgactat 128 ||||||||||||| ||||| |||||||| Sbjct: 79901 cgatgacgatgacgatgacgatgactat 79928
>gb|AC079776.5| Homo sapiens BAC clone RP11-315H12 from 2, complete sequence Length = 198961 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 103 atgacgatgaccatgaccatgactatgc 130 ||||| ||||||||||||||||| |||| Sbjct: 69111 atgaccatgaccatgaccatgaccatgc 69138
>gb|AE003814.3| Drosophila melanogaster chromosome 2R, section 36 of 73 of the complete sequence Length = 254438 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 gatgacgatgaccatgacca 121 |||||||||||||||||||| Sbjct: 69120 gatgacgatgaccatgacca 69139
>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence Length = 2906179 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 gatgacgatgaccatgaccatgac 125 |||||| ||||||||||||||||| Sbjct: 338705 gatgaccatgaccatgaccatgac 338682
>emb|BX005367.10| Zebrafish DNA sequence from clone DKEY-97L20 in linkage group 22, complete sequence Length = 243709 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 ttcgatttatagtcctgtag 342 |||||||||||||||||||| Sbjct: 238250 ttcgatttatagtcctgtag 238269
>emb|AL837515.9| Zebrafish DNA sequence from clone CH211-261F22 in linkage group 5, complete sequence Length = 153980 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 tggtgtggtgtattttaggg 396 |||||||||||||||||||| Sbjct: 32932 tggtgtggtgtattttaggg 32913
>gb|AC134445.3| Mus musculus BAC clone RP24-170M15 from 6, complete sequence Length = 165568 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 atgacgatgaccatgaccatgact 126 ||||| |||||||||||||||||| Sbjct: 126869 atgaccatgaccatgaccatgact 126846
>gb|AC004045.1|AC004045 Homo sapiens chromosome 4 clone B139M23 map 4q25, complete sequence Length = 106346 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 aacattttgccagtttgtta 289 |||||||||||||||||||| Sbjct: 3994 aacattttgccagtttgtta 4013 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,036,061 Number of Sequences: 3902068 Number of extensions: 4036061 Number of successful extensions: 73934 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73583 Number of HSP's gapped (non-prelim): 321 length of query: 505 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 483 effective length of database: 17,147,199,772 effective search space: 8282097489876 effective search space used: 8282097489876 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
