>CHM1B_HUMAN (Q7LBR1) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b) (CHMP1.5)
           (Vacuolar protein sorting 46-2) (Vps46-2) (hVps46-2)
          Length = 199

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 30/69 (43%), Positives = 43/69 (62%)
 Frame = +3

Query: 108 MGNPEKLMAQIFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIR 287
           M N EK    +F+LKF +K L R A+KC             AI+KGN++ ARI+AENAIR
Sbjct: 1   MSNMEK---HLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57

Query: 288 KRTEHMNYL 314
           ++ + +N+L
Sbjct: 58  QKNQAVNFL 66

>CH1B2_MOUSE (Q9CQD4) Charged multivesicular body protein 1b-2|
           (Chromatin-modifying protein 1b-2) (CHMP1b-2)
          Length = 199

 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 30/69 (43%), Positives = 42/69 (60%)
 Frame = +3

Query: 108 MGNPEKLMAQIFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIR 287
           M N EK    +F+LKF +K L R A+KC             AI+KGN + ARI+AENAIR
Sbjct: 1   MSNMEK---HLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIR 57

Query: 288 KRTEHMNYL 314
           ++ + +N+L
Sbjct: 58  QKNQAINFL 66

>CHM1B_BOVIN (Q5E994) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score = 57.8 bits (138), Expect = 7e-09
 Identities = 30/69 (43%), Positives = 43/69 (62%)
 Frame = +3

Query: 108 MGNPEKLMAQIFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIR 287
           M N EK    +F+LKF +K L R A+KC             AI+KGN++ ARI+AENAIR
Sbjct: 1   MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57

Query: 288 KRTEHMNYL 314
           ++ + +N+L
Sbjct: 58  QKNQAVNFL 66

>CHM1B_BRARE (Q7ZVB1) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 26/59 (44%), Positives = 40/59 (67%)
 Frame = +3

Query: 138 IFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTEHMNYL 314
           +F+LKF +K LQR ++KC             AI+KGN++ ARI+AENAIR++ + +N+L
Sbjct: 8   LFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFL 66

>CH1B1_MOUSE (Q99LU0) Charged multivesicular body protein 1b-1|
           (Chromatin-modifying protein 1b-1) (CHMP1b-1)
          Length = 199

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 29/69 (42%), Positives = 43/69 (62%)
 Frame = +3

Query: 108 MGNPEKLMAQIFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIR 287
           M N EK    +F+LKF +K L R ++KC             AI+KGN++ ARI+AENAIR
Sbjct: 1   MSNMEK---HLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57

Query: 288 KRTEHMNYL 314
           ++ + +N+L
Sbjct: 58  QKNQGVNFL 66

>CHM1A_BRARE (Q6PHF0) Charged multivesicular body protein 1a|
           (Chromatin-modifying protein 1a) (CHMP1a)
          Length = 198

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 27/59 (45%), Positives = 38/59 (64%)
 Frame = +3

Query: 138 IFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTEHMNYL 314
           +F LKFTSK L+R A+K              A+++ NV+ AR+YAENAIRK+ E +N+L
Sbjct: 5   LFQLKFTSKQLERLAKKAEKDSKSEQAKVKKALQQKNVECARVYAENAIRKKNEGLNWL 63

>CHM1B_CHICK (Q5ZKX1) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 28/69 (40%), Positives = 43/69 (62%)
 Frame = +3

Query: 108 MGNPEKLMAQIFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIR 287
           M N EK    +F+LKF +K L R +++C             AI+KGN++ ARI+AENAIR
Sbjct: 1   MSNMEK---HLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57

Query: 288 KRTEHMNYL 314
           ++ + +N+L
Sbjct: 58  QKNQAINFL 66

>CHM1B_XENTR (Q6DF27) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 26/59 (44%), Positives = 38/59 (64%)
 Frame = +3

Query: 138 IFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTEHMNYL 314
           +F+LKF +K L R A+KC             AI+KGN + ARI+AENAIR++ + +N+L
Sbjct: 8   LFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFL 66

>CHM1B_XENLA (Q7SZB5) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 26/59 (44%), Positives = 38/59 (64%)
 Frame = +3

Query: 138 IFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTEHMNYL 314
           +F+LKF +K L R A+KC             AI+KGN + ARI+AENAIR++ + +N+L
Sbjct: 8   LFNLKFAAKELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFL 66

>CHM1A_XENLA (Q6NUD8) Charged multivesicular body protein 1a|
           (Chromatin-modifying protein 1a) (CHMP1a)
          Length = 196

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 25/59 (42%), Positives = 38/59 (64%)
 Frame = +3

Query: 138 IFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTEHMNYL 314
           +F LKFT+K L++ A+K              A+++ NV+ AR+YAENAIRK+ E +N+L
Sbjct: 5   LFQLKFTAKQLEKLAKKAEKDSNTEQAKVKKALQQKNVEVARVYAENAIRKKNEGLNWL 63

>CHM1A_MOUSE (Q921W0) Charged multivesicular body protein 1a|
           (Chromatin-modifying protein 1a) (CHMP1a)
          Length = 196

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 25/59 (42%), Positives = 38/59 (64%)
 Frame = +3

Query: 138 IFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTEHMNYL 314
           +F LKFT+K L++ A+K              A+++ NV+ AR+YAENAIRK+ E +N+L
Sbjct: 5   LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGVNWL 63

>CHM1A_PONPY (Q5R605) Charged multivesicular body protein 1a|
           (Chromatin-modifying protein 1a) (CHMP1a)
          Length = 196

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 25/59 (42%), Positives = 37/59 (62%)
 Frame = +3

Query: 138 IFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTEHMNYL 314
           +F LKFT+K L++ A+K              A+ + NV+ AR+YAENAIRK+ E +N+L
Sbjct: 5   LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWL 63

>CHM1A_HUMAN (Q9HD42) Charged multivesicular body protein 1a|
           (Chromatin-modifying protein 1a) (CHMP1a) (Vacuolar
           protein sorting 46-1) (Vps46-1) (hVps46-1)
          Length = 196

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 25/59 (42%), Positives = 37/59 (62%)
 Frame = +3

Query: 138 IFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTEHMNYL 314
           +F LKFT+K L++ A+K              A+ + NV+ AR+YAENAIRK+ E +N+L
Sbjct: 5   LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWL 63

>DID2_YEAST (P69771) Vacuolar protein sorting protein 46 (Charged|
           multivesicular body protein 1) (DOA4-independent
           degradation protein 2) (Fifty two inhibitor 1)
          Length = 204

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 26/59 (44%), Positives = 33/59 (55%)
 Frame = +3

Query: 138 IFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTEHMNYL 314
           +F LKFTSK LQ+QA K              A+ + N D +RIYA NAIRK+ E +  L
Sbjct: 13  LFQLKFTSKQLQKQANKASKEEKQETNKLKRALNE-NEDISRIYASNAIRKKNERLQLL 70


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.293    0.113    0.301 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,987,821
Number of Sequences: 219361
Number of extensions: 125643
Number of successful extensions: 119
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.7 bits)