| Clone Name | basd27d09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474399.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3465 Score = 626 bits (316), Expect = e-176 Identities = 442/484 (91%) Strand = Plus / Plus Query: 21 gaagctatgggaatggctgcggtaaaggcaatagctgctataactgccatcattgctgga 80 |||||||||||||||||||| ||||| ||||||||||||||||| ||||| || |||||| Sbjct: 2191 gaagctatgggaatggctgctgtaaaagcaatagctgctataacagccataatcgctgga 2250 Query: 81 ggtcgtttgtttcttcggccaatttacaggcaaattgctgaaaatcggaatgctgagata 140 |||||| |||| ||||| |||||||||| |||||||||||||||| |||| ||||||||| Sbjct: 2251 ggtcgtctgttgcttcgtccaatttacaagcaaattgctgaaaataggaacgctgagata 2310 Query: 141 ttttcagcaaatactctccttgttatatttgggacaagtcttcttactgctcgggctggc 200 |||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||| Sbjct: 2311 ttttcagcaaatactctccttgttatttttggaacaagtcttctcacagctcgggctgga 2370 Query: 201 ttatcgatggcactgggagcatttttggctggtttgttgttagcagaaacagagttctcc 260 || |||||||||||||||||||||||||||||| | ||| ||||||||||||| |||||| Sbjct: 2371 ttgtcgatggcactgggagcatttttggctggtctattgctagcagaaacagaattctcc 2430 Query: 261 ttacaggttgagtcggatattgctccttaccgtggccttctattaggtctattctttatg 320 ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 2431 ttacaggttgagtcggatattgctccttaccgtggtcttctgttaggtcttttctttatg 2490 Query: 321 acggttggaatgtccattgatccaaagctgtttctttcaaacttcccagcaatctctttg 380 |||||||||||||| ||||| || ||| || |||| ||||||||||||||||||||| || Sbjct: 2491 acggttggaatgtctattgaccccaagttgcttctgtcaaacttcccagcaatctctgtg 2550 Query: 381 atactaggtctcttaattatcggaaagacactgttagtaacatttattggtagagtattt 440 ||| ||||||| || ||||| ||||||||| |||| || ||||||||||||||||||||| Sbjct: 2551 atattaggtcttttgattattggaaagacaatgttggttacatttattggtagagtattt 2610 Query: 441 ggaatttccaccatatctgctgtccgggttggacttttgcttgcacctggtggggagttt 500 ||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 2611 ggaatttccaccatagctgctgttcgggttggtctgttgcttgcacctggtggggagttt 2670 Query: 501 gctt 504 |||| Sbjct: 2671 gctt 2674
>dbj|AK121846.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101J11, full insert sequence Length = 4264 Score = 626 bits (316), Expect = e-176 Identities = 442/484 (91%) Strand = Plus / Plus Query: 21 gaagctatgggaatggctgcggtaaaggcaatagctgctataactgccatcattgctgga 80 |||||||||||||||||||| ||||| ||||||||||||||||| ||||| || |||||| Sbjct: 2536 gaagctatgggaatggctgctgtaaaagcaatagctgctataacagccataatcgctgga 2595 Query: 81 ggtcgtttgtttcttcggccaatttacaggcaaattgctgaaaatcggaatgctgagata 140 |||||| |||| ||||| |||||||||| |||||||||||||||| |||| ||||||||| Sbjct: 2596 ggtcgtctgttgcttcgtccaatttacaagcaaattgctgaaaataggaacgctgagata 2655 Query: 141 ttttcagcaaatactctccttgttatatttgggacaagtcttcttactgctcgggctggc 200 |||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||| Sbjct: 2656 ttttcagcaaatactctccttgttatttttggaacaagtcttctcacagctcgggctgga 2715 Query: 201 ttatcgatggcactgggagcatttttggctggtttgttgttagcagaaacagagttctcc 260 || |||||||||||||||||||||||||||||| | ||| ||||||||||||| |||||| Sbjct: 2716 ttgtcgatggcactgggagcatttttggctggtctattgctagcagaaacagaattctcc 2775 Query: 261 ttacaggttgagtcggatattgctccttaccgtggccttctattaggtctattctttatg 320 ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 2776 ttacaggttgagtcggatattgctccttaccgtggtcttctgttaggtcttttctttatg 2835 Query: 321 acggttggaatgtccattgatccaaagctgtttctttcaaacttcccagcaatctctttg 380 |||||||||||||| ||||| || ||| || |||| ||||||||||||||||||||| || Sbjct: 2836 acggttggaatgtctattgaccccaagttgcttctgtcaaacttcccagcaatctctgtg 2895 Query: 381 atactaggtctcttaattatcggaaagacactgttagtaacatttattggtagagtattt 440 ||| ||||||| || ||||| ||||||||| |||| || ||||||||||||||||||||| Sbjct: 2896 atattaggtcttttgattattggaaagacaatgttggttacatttattggtagagtattt 2955 Query: 441 ggaatttccaccatatctgctgtccgggttggacttttgcttgcacctggtggggagttt 500 ||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 2956 ggaatttccaccatagctgctgttcgggttggtctgttgcttgcacctggtggggagttt 3015 Query: 501 gctt 504 |||| Sbjct: 3016 gctt 3019
>dbj|AK068406.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151M09, full insert sequence Length = 2581 Score = 626 bits (316), Expect = e-176 Identities = 442/484 (91%) Strand = Plus / Plus Query: 21 gaagctatgggaatggctgcggtaaaggcaatagctgctataactgccatcattgctgga 80 |||||||||||||||||||| ||||| ||||||||||||||||| ||||| || |||||| Sbjct: 825 gaagctatgggaatggctgctgtaaaagcaatagctgctataacagccataatcgctgga 884 Query: 81 ggtcgtttgtttcttcggccaatttacaggcaaattgctgaaaatcggaatgctgagata 140 |||||| |||| ||||| |||||||||| |||||||||||||||| |||| ||||||||| Sbjct: 885 ggtcgtctgttgcttcgtccaatttacaagcaaattgctgaaaataggaacgctgagata 944 Query: 141 ttttcagcaaatactctccttgttatatttgggacaagtcttcttactgctcgggctggc 200 |||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||| Sbjct: 945 ttttcagcaaatactctccttgttatttttggaacaagtcttctcacagctcgggctgga 1004 Query: 201 ttatcgatggcactgggagcatttttggctggtttgttgttagcagaaacagagttctcc 260 || |||||||||||||||||||||||||||||| | ||| ||||||||||||| |||||| Sbjct: 1005 ttgtcgatggcactgggagcatttttggctggtctattgctagcagaaacagaattctcc 1064 Query: 261 ttacaggttgagtcggatattgctccttaccgtggccttctattaggtctattctttatg 320 ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 1065 ttacaggttgagtcggatattgctccttaccgtggtcttctgttaggtcttttctttatg 1124 Query: 321 acggttggaatgtccattgatccaaagctgtttctttcaaacttcccagcaatctctttg 380 |||||||||||||| ||||| || ||| || |||| ||||||||||||||||||||| || Sbjct: 1125 acggttggaatgtctattgaccccaagttgcttctgtcaaacttcccagcaatctctgtg 1184 Query: 381 atactaggtctcttaattatcggaaagacactgttagtaacatttattggtagagtattt 440 ||| ||||||| || ||||| ||||||||| |||| || ||||||||||||||||||||| Sbjct: 1185 atattaggtcttttgattattggaaagacaatgttggttacatttattggtagagtattt 1244 Query: 441 ggaatttccaccatatctgctgtccgggttggacttttgcttgcacctggtggggagttt 500 ||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 1245 ggaatttccaccatagctgctgttcgggttggtctgttgcttgcacctggtggggagttt 1304 Query: 501 gctt 504 |||| Sbjct: 1305 gctt 1308
>dbj|AK103142.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033120G14, full insert sequence Length = 1306 Score = 618 bits (312), Expect = e-174 Identities = 441/484 (91%) Strand = Plus / Plus Query: 21 gaagctatgggaatggctgcggtaaaggcaatagctgctataactgccatcattgctgga 80 |||||||||||||||||||| ||||| ||||||||||||||||| ||||| || |||||| Sbjct: 277 gaagctatgggaatggctgctgtaaaagcaatagctgctataacagccataatcgctgga 336 Query: 81 ggtcgtttgtttcttcggccaatttacaggcaaattgctgaaaatcggaatgctgagata 140 |||||| |||| ||||| |||||||||| ||||||||||||| || |||| ||||||||| Sbjct: 337 ggtcgtctgttgcttcgtccaatttacaagcaaattgctgaagataggaacgctgagata 396 Query: 141 ttttcagcaaatactctccttgttatatttgggacaagtcttcttactgctcgggctggc 200 |||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||| Sbjct: 397 ttttcagcaaatactctccttgttatttttggaacaagtcttctcacagctcgggctgga 456 Query: 201 ttatcgatggcactgggagcatttttggctggtttgttgttagcagaaacagagttctcc 260 || |||||||||||||||||||||||||||||| | ||| ||||||||||||| |||||| Sbjct: 457 ttgtcgatggcactgggagcatttttggctggtctattgctagcagaaacagaattctcc 516 Query: 261 ttacaggttgagtcggatattgctccttaccgtggccttctattaggtctattctttatg 320 ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 517 ttacaggttgagtcggatattgctccttaccgtggtcttctgttaggtcttttctttatg 576 Query: 321 acggttggaatgtccattgatccaaagctgtttctttcaaacttcccagcaatctctttg 380 |||||||||||||| ||||| || ||| || |||| ||||||||||||||||||||| || Sbjct: 577 acggttggaatgtctattgaccccaagttgcttctgtcaaacttcccagcaatctctgtg 636 Query: 381 atactaggtctcttaattatcggaaagacactgttagtaacatttattggtagagtattt 440 ||| ||||||| || ||||| ||||||||| |||| || ||||||||||||||||||||| Sbjct: 637 atattaggtcttttgattattggaaagacaatgttggttacatttattggtagagtattt 696 Query: 441 ggaatttccaccatatctgctgtccgggttggacttttgcttgcacctggtggggagttt 500 ||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 697 ggaatttccaccatagctgctgttcgggttggtctgttgcttgcacctggtggggagttt 756 Query: 501 gctt 504 |||| Sbjct: 757 gctt 760
>emb|AL606641.3|OSJN00074 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032F06, complete sequence Length = 148023 Score = 218 bits (110), Expect = 1e-53 Identities = 164/182 (90%) Strand = Plus / Minus Query: 323 ggttggaatgtccattgatccaaagctgtttctttcaaacttcccagcaatctctttgat 382 |||||||||||| ||||| || ||| || |||| ||||||||||||||||||||| |||| Sbjct: 105032 ggttggaatgtctattgaccccaagttgcttctgtcaaacttcccagcaatctctgtgat 104973 Query: 383 actaggtctcttaattatcggaaagacactgttagtaacatttattggtagagtatttgg 442 | ||||||| || ||||| ||||||||| |||| || ||||||||||||||||||||||| Sbjct: 104972 attaggtcttttgattattggaaagacaatgttggttacatttattggtagagtatttgg 104913 Query: 443 aatttccaccatatctgctgtccgggttggacttttgcttgcacctggtggggagtttgc 502 ||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||||| Sbjct: 104912 aatttccaccatagctgctgttcgggttggtctgttgcttgcacctggtggggagtttgc 104853 Query: 503 tt 504 || Sbjct: 104852 tt 104851 Score = 190 bits (96), Expect = 3e-45 Identities = 123/132 (93%) Strand = Plus / Minus Query: 194 ggctggcttatcgatggcactgggagcatttttggctggtttgttgttagcagaaacaga 253 |||||| || |||||||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct: 105641 ggctggattgtcgatggcactgggagcatttttggctggtctattgctagcagaaacaga 105582 Query: 254 gttctccttacaggttgagtcggatattgctccttaccgtggccttctattaggtctatt 313 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || Sbjct: 105581 attctccttacaggttgagtcggatattgctccttaccgtggtcttctgttaggtctttt 105522 Query: 314 ctttatgacggt 325 |||||||||||| Sbjct: 105521 ctttatgacggt 105510 Score = 141 bits (71), Expect = 3e-30 Identities = 95/103 (92%) Strand = Plus / Minus Query: 93 cttcggccaatttacaggcaaattgctgaaaatcggaatgctgagatattttcagcaaat 152 ||||| |||||||||| |||||||||||||||| |||| ||||||||||||||||||||| Sbjct: 105830 cttcgtccaatttacaagcaaattgctgaaaataggaacgctgagatattttcagcaaat 105771 Query: 153 actctccttgttatatttgggacaagtcttcttactgctcggg 195 |||||||||||||| ||||| ||||||||||| || ||||||| Sbjct: 105770 actctccttgttatttttggaacaagtcttctcacagctcggg 105728 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Minus Query: 21 gaagctatgggaatggctgcggtaaaggcaatagctgctataactgccatcattgctgga 80 |||||||||||||||||||| ||||| ||||||||||||||||| ||||| || |||||| Sbjct: 106116 gaagctatgggaatggctgctgtaaaagcaatagctgctataacagccataatcgctgga 106057 Query: 81 ggtcgt 86 |||||| Sbjct: 106056 ggtcgt 106051
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 218 bits (110), Expect = 1e-53 Identities = 164/182 (90%) Strand = Plus / Minus Query: 323 ggttggaatgtccattgatccaaagctgtttctttcaaacttcccagcaatctctttgat 382 |||||||||||| ||||| || ||| || |||| ||||||||||||||||||||| |||| Sbjct: 34898919 ggttggaatgtctattgaccccaagttgcttctgtcaaacttcccagcaatctctgtgat 34898860 Query: 383 actaggtctcttaattatcggaaagacactgttagtaacatttattggtagagtatttgg 442 | ||||||| || ||||| ||||||||| |||| || ||||||||||||||||||||||| Sbjct: 34898859 attaggtcttttgattattggaaagacaatgttggttacatttattggtagagtatttgg 34898800 Query: 443 aatttccaccatatctgctgtccgggttggacttttgcttgcacctggtggggagtttgc 502 ||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||||| Sbjct: 34898799 aatttccaccatagctgctgttcgggttggtctgttgcttgcacctggtggggagtttgc 34898740 Query: 503 tt 504 || Sbjct: 34898739 tt 34898738 Score = 190 bits (96), Expect = 3e-45 Identities = 123/132 (93%) Strand = Plus / Minus Query: 194 ggctggcttatcgatggcactgggagcatttttggctggtttgttgttagcagaaacaga 253 |||||| || |||||||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct: 34899528 ggctggattgtcgatggcactgggagcatttttggctggtctattgctagcagaaacaga 34899469 Query: 254 gttctccttacaggttgagtcggatattgctccttaccgtggccttctattaggtctatt 313 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || Sbjct: 34899468 attctccttacaggttgagtcggatattgctccttaccgtggtcttctgttaggtctttt 34899409 Query: 314 ctttatgacggt 325 |||||||||||| Sbjct: 34899408 ctttatgacggt 34899397 Score = 141 bits (71), Expect = 3e-30 Identities = 95/103 (92%) Strand = Plus / Minus Query: 93 cttcggccaatttacaggcaaattgctgaaaatcggaatgctgagatattttcagcaaat 152 ||||| |||||||||| |||||||||||||||| |||| ||||||||||||||||||||| Sbjct: 34899717 cttcgtccaatttacaagcaaattgctgaaaataggaacgctgagatattttcagcaaat 34899658 Query: 153 actctccttgttatatttgggacaagtcttcttactgctcggg 195 |||||||||||||| ||||| ||||||||||| || ||||||| Sbjct: 34899657 actctccttgttatttttggaacaagtcttctcacagctcggg 34899615 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Minus Query: 21 gaagctatgggaatggctgcggtaaaggcaatagctgctataactgccatcattgctgga 80 |||||||||||||||||||| ||||| ||||||||||||||||| ||||| || |||||| Sbjct: 34900003 gaagctatgggaatggctgctgtaaaagcaatagctgctataacagccataatcgctgga 34899944 Query: 81 ggtcgt 86 |||||| Sbjct: 34899943 ggtcgt 34899938
>emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124B04, complete sequence Length = 115564 Score = 218 bits (110), Expect = 1e-53 Identities = 164/182 (90%) Strand = Plus / Minus Query: 323 ggttggaatgtccattgatccaaagctgtttctttcaaacttcccagcaatctctttgat 382 |||||||||||| ||||| || ||| || |||| ||||||||||||||||||||| |||| Sbjct: 78317 ggttggaatgtctattgaccccaagttgcttctgtcaaacttcccagcaatctctgtgat 78258 Query: 383 actaggtctcttaattatcggaaagacactgttagtaacatttattggtagagtatttgg 442 | ||||||| || ||||| ||||||||| |||| || ||||||||||||||||||||||| Sbjct: 78257 attaggtcttttgattattggaaagacaatgttggttacatttattggtagagtatttgg 78198 Query: 443 aatttccaccatatctgctgtccgggttggacttttgcttgcacctggtggggagtttgc 502 ||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||||| Sbjct: 78197 aatttccaccatagctgctgttcgggttggtctgttgcttgcacctggtggggagtttgc 78138 Query: 503 tt 504 || Sbjct: 78137 tt 78136 Score = 190 bits (96), Expect = 3e-45 Identities = 123/132 (93%) Strand = Plus / Minus Query: 194 ggctggcttatcgatggcactgggagcatttttggctggtttgttgttagcagaaacaga 253 |||||| || |||||||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct: 78926 ggctggattgtcgatggcactgggagcatttttggctggtctattgctagcagaaacaga 78867 Query: 254 gttctccttacaggttgagtcggatattgctccttaccgtggccttctattaggtctatt 313 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || Sbjct: 78866 attctccttacaggttgagtcggatattgctccttaccgtggtcttctgttaggtctttt 78807 Query: 314 ctttatgacggt 325 |||||||||||| Sbjct: 78806 ctttatgacggt 78795 Score = 141 bits (71), Expect = 3e-30 Identities = 95/103 (92%) Strand = Plus / Minus Query: 93 cttcggccaatttacaggcaaattgctgaaaatcggaatgctgagatattttcagcaaat 152 ||||| |||||||||| |||||||||||||||| |||| ||||||||||||||||||||| Sbjct: 79115 cttcgtccaatttacaagcaaattgctgaaaataggaacgctgagatattttcagcaaat 79056 Query: 153 actctccttgttatatttgggacaagtcttcttactgctcggg 195 |||||||||||||| ||||| ||||||||||| || ||||||| Sbjct: 79055 actctccttgttatttttggaacaagtcttctcacagctcggg 79013 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Minus Query: 21 gaagctatgggaatggctgcggtaaaggcaatagctgctataactgccatcattgctgga 80 |||||||||||||||||||| ||||| ||||||||||||||||| ||||| || |||||| Sbjct: 79401 gaagctatgggaatggctgctgtaaaagcaatagctgctataacagccataatcgctgga 79342 Query: 81 ggtcgt 86 |||||| Sbjct: 79341 ggtcgt 79336
>ref|NM_116288.2| Arabidopsis thaliana KEA2; potassium:hydrogen antiporter AT4G00630 (KEA2) mRNA, complete cds Length = 1884 Score = 101 bits (51), Expect = 2e-18 Identities = 231/291 (79%) Strand = Plus / Plus Query: 56 tgctataactgccatcattgctggaggtcgtttgtttcttcggccaatttacaggcaaat 115 |||||| |||| ||| |||||||| || ||| | |||| ||||| || |||| |||||| Sbjct: 642 tgctatcactggcataattgctggtggccgtctccttctgcggccgatatacaagcaaat 701 Query: 116 tgctgaaaatcggaatgctgagatattttcagcaaatactctccttgttatatttgggac 175 ||| ||||| || |||||||||||||| || || ||||| || || ||||| ||||||| Sbjct: 702 tgcagaaaaccgaaatgctgagatattctccgccaatacacttctggttattcttgggac 761 Query: 176 aagtcttcttactgctcgggctggcttatcgatggcactgggagcatttttggctggttt 235 ||| | ||||| ||| |||| || | || |||||| | ||||| |||||||||||| | Sbjct: 762 tagtttacttacagctagggcgggactttccatggcattaggagcgtttttggctggtct 821 Query: 236 gttgttagcagaaacagagttctccttacaggttgagtcggatattgctccttaccgtgg 295 | | ||||| || || || ||||| || ||||| || ||||| ||||| |||||||| Sbjct: 822 actacttgcagagactgaattttccttgcaagttgaatcagatatcgctccataccgtgg 881 Query: 296 ccttctattaggtctattctttatgacggttggaatgtccattgatccaaa 346 ||||| || || || ||||| |||||||| || ||||||||||||||||| Sbjct: 882 tcttctgttgggactcttcttcatgacggtgggcatgtccattgatccaaa 932
>gb|AC123899.15| Medicago truncatula clone mth2-33n6, complete sequence Length = 127126 Score = 93.7 bits (47), Expect = 5e-16 Identities = 101/119 (84%) Strand = Plus / Plus Query: 207 atggcactgggagcatttttggctggtttgttgttagcagaaacagagttctccttacag 266 |||||| ||||||||||||| |||||||| | | |||||||| || || ||||||||| Sbjct: 110340 atggcattgggagcatttttagctggtttactactggcagaaactgaattttccttacag 110399 Query: 267 gttgagtcggatattgctccttaccgtggccttctattaggtctattctttatgacggt 325 ||||| || ||||||||||| || ||||||||||| || || || |||||||||||||| Sbjct: 110400 gttgaatctgatattgctccatatcgtggccttcttttggggctcttctttatgacggt 110458 Score = 60.0 bits (30), Expect = 7e-06 Identities = 75/90 (83%) Strand = Plus / Plus Query: 93 cttcggccaatttacaggcaaattgctgaaaatcggaatgctgagatattttcagcaaat 152 ||||||||||| |||| |||| | || ||||||| |||||||| ||||| ||||| ||| Sbjct: 109542 cttcggccaatatacaagcaagtcgcagaaaatcaaaatgctgaaatattctcagccaat 109601 Query: 153 actctccttgttatatttgggacaagtctt 182 || || |||||||| ||||||| |||||| Sbjct: 109602 acacttcttgttattcttgggaccagtctt 109631 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 323 ggttggaatgtccattgatccaaagctgtttctttcaaacttcccag 369 |||||||||||| || |||||||| || ||| ||||||||||||||| Sbjct: 111852 ggttggaatgtcaatcgatccaaaactttttgtttcaaacttcccag 111898
>gb|AC148817.3| Medicago truncatula chromosome 7 BAC clone mth2-22c10, complete sequence Length = 123020 Score = 93.7 bits (47), Expect = 5e-16 Identities = 101/119 (84%) Strand = Plus / Plus Query: 207 atggcactgggagcatttttggctggtttgttgttagcagaaacagagttctccttacag 266 |||||| ||||||||||||| |||||||| | | |||||||| || || ||||||||| Sbjct: 2537 atggcattgggagcatttttagctggtttactactggcagaaactgaattttccttacag 2596 Query: 267 gttgagtcggatattgctccttaccgtggccttctattaggtctattctttatgacggt 325 ||||| || ||||||||||| || ||||||||||| || || || |||||||||||||| Sbjct: 2597 gttgaatctgatattgctccatatcgtggccttcttttggggctcttctttatgacggt 2655 Score = 60.0 bits (30), Expect = 7e-06 Identities = 75/90 (83%) Strand = Plus / Plus Query: 93 cttcggccaatttacaggcaaattgctgaaaatcggaatgctgagatattttcagcaaat 152 ||||||||||| |||| |||| | || ||||||| |||||||| ||||| ||||| ||| Sbjct: 1739 cttcggccaatatacaagcaagtcgcagaaaatcaaaatgctgaaatattctcagccaat 1798 Query: 153 actctccttgttatatttgggacaagtctt 182 || || |||||||| ||||||| |||||| Sbjct: 1799 acacttcttgttattcttgggaccagtctt 1828 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 323 ggttggaatgtccattgatccaaagctgtttctttcaaacttcccag 369 |||||||||||| || |||||||| || ||| ||||||||||||||| Sbjct: 4049 ggttggaatgtcaatcgatccaaaactttttgtttcaaacttcccag 4095
>ref|NM_100062.2| Arabidopsis thaliana KEA1 (K EFFLUX ANTIPORTER 1); potassium:hydrogen antiporter AT1G01790 (KEA1) mRNA, complete cds Length = 2385 Score = 85.7 bits (43), Expect = 1e-13 Identities = 226/287 (78%) Strand = Plus / Plus Query: 57 gctataactgccatcattgctggaggtcgtttgtttcttcggccaatttacaggcaaatt 116 ||||| ||||| || |||||||| || ||| | ||||||| ||||| |||| ||||||| Sbjct: 927 gctattactgcaataattgctggtggccgtctacttcttcgaccaatctacaagcaaatt 986 Query: 117 gctgaaaatcggaatgctgagatattttcagcaaatactctccttgttatatttgggaca 176 || |||||||| || || |||||||| || || || || || || ||||| ||||||| Sbjct: 987 gcagaaaatcgaaacgccgagatattctctgccaacacgcttctcgttattcttgggact 1046 Query: 177 agtcttcttactgctcgggctggcttatcgatggcactgggagcatttttggctggtttg 236 ||| | || || ||| ||||||| | || |||||| | ||||| |||||||||||| | Sbjct: 1047 agtttactgacagctagggctggactttccatggcattaggagcgtttttggctggtcta 1106 Query: 237 ttgttagcagaaacagagttctccttacaggttgagtcggatattgctccttaccgtggc 296 | | ||||| ||||| || || || || || || || ||||||||||| || ||||| Sbjct: 1107 ctccttgcagagacagaattttcgttgcaagtagaatcagatattgctccatatcgtggt 1166 Query: 297 cttctattaggtctattctttatgacggttggaatgtccattgatcc 343 ||||| || || || ||||| ||||||||||||||||| |||||||| Sbjct: 1167 cttctgttgggactcttcttcatgacggttggaatgtcaattgatcc 1213
>gb|AF003382.1|AF003382 Arabidopsis thaliana K efflux antiporter KEA1 mRNA, complete cds Length = 2350 Score = 85.7 bits (43), Expect = 1e-13 Identities = 226/287 (78%) Strand = Plus / Plus Query: 57 gctataactgccatcattgctggaggtcgtttgtttcttcggccaatttacaggcaaatt 116 ||||| ||||| || |||||||| || ||| | ||||||| ||||| |||| ||||||| Sbjct: 927 gctattactgcaataattgctggtggccgtctacttcttcgaccaatctacaagcaaatt 986 Query: 117 gctgaaaatcggaatgctgagatattttcagcaaatactctccttgttatatttgggaca 176 || |||||||| || || |||||||| || || || || || || ||||| ||||||| Sbjct: 987 gcagaaaatcgaaacgccgagatattctctgccaacacgcttctcgttattcttgggact 1046 Query: 177 agtcttcttactgctcgggctggcttatcgatggcactgggagcatttttggctggtttg 236 ||| | || || ||| ||||||| | || |||||| | ||||| |||||||||||| | Sbjct: 1047 agtttactgacagctagggctggactttccatggcattaggagcgtttttggctggtcta 1106 Query: 237 ttgttagcagaaacagagttctccttacaggttgagtcggatattgctccttaccgtggc 296 | | ||||| ||||| || || || || || || || ||||||||||| || ||||| Sbjct: 1107 ctccttgcagagacagaattttcgttgcaagtagaatcagatattgctccatatcgtggt 1166 Query: 297 cttctattaggtctattctttatgacggttggaatgtccattgatcc 343 ||||| || || || ||||| ||||||||||||||||| |||||||| Sbjct: 1167 cttctgttgggactcttcttcatgacggttggaatgtcaattgatcc 1213
>dbj|AP006402.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT34J23, TM0284, complete sequence Length = 92675 Score = 77.8 bits (39), Expect = 3e-11 Identities = 99/119 (83%) Strand = Plus / Minus Query: 207 atggcactgggagcatttttggctggtttgttgttagcagaaacagagttctccttacag 266 |||||| |||||||||||||||||||||| | | |||||||| || || ||||| || Sbjct: 60132 atggcattgggagcatttttggctggtttactactggcagaaactgaattttccttgcaa 60073 Query: 267 gttgagtcggatattgctccttaccgtggccttctattaggtctattctttatgacggt 325 ||||| || ||||||||||| || ||||| ||||| || || || |||||||||||||| Sbjct: 60072 gttgaatctgatattgctccatatcgtggtcttcttttggggctgttctttatgacggt 60014 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 99 ccaatttacaggcaaattgctgaaaatcggaatgctgagatattttcagcaaatactctc 158 ||||| |||| |||| |||| ||||||| ||||| || ||||||||||| ||||| ||| Sbjct: 60988 ccaatatacaagcaagttgcagaaaatcaaaatgcagaaatattttcagccaatacgctc 60929 Query: 159 cttgttatatttgggacaagtcttcttac 187 |||||||| ||||||| ||||||||||| Sbjct: 60928 cttgttattcttgggactagtcttcttac 60900 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 323 ggttggaatgtccattgatccaaagctgtttctttcaaacttcccag 369 |||||||||||| ||||||||||| || || ||||||||||||||| Sbjct: 59585 ggttggaatgtctattgatccaaaacttcttgtttcaaacttcccag 59539
>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2 Length = 197975 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 91 ttcttcggccaatttacaggcaaattgctgaaaatcggaatgctgagatattttcagcaa 150 |||| ||||| || |||| ||||||||| ||||| || |||||||||||||| || || | Sbjct: 70872 ttctgcggccgatatacaagcaaattgcagaaaaccgaaatgctgagatattctccgcca 70813 Query: 151 atactctccttgttatatttgggac 175 |||| || || ||||| ||||||| Sbjct: 70812 atacacttctggttattcttgggac 70788
>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 Length = 91849 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 91 ttcttcggccaatttacaggcaaattgctgaaaatcggaatgctgagatattttcagcaa 150 |||| ||||| || |||| ||||||||| ||||| || |||||||||||||| || || | Sbjct: 51998 ttctgcggccgatatacaagcaaattgcagaaaaccgaaatgctgagatattctccgcca 51939 Query: 151 atactctccttgttatatttgggac 175 |||| || || ||||| ||||||| Sbjct: 51938 atacacttctggttattcttgggac 51914
>gb|AC154394.6| Mus musculus chromosome 18, clone RP23-315M1, complete sequence Length = 246033 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 237 ttgttagcagaaacagagttctcctt 262 ||||| |||||||||||||||||||| Sbjct: 72368 ttgttggcagaaacagagttctcctt 72393
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 gcaaatactctccttgttatatttg 171 ||||||||||||||| ||||||||| Sbjct: 2920049 gcaaatactctcctttttatatttg 2920073
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 gcaaatactctccttgttatatttg 171 ||||||||||||||| ||||||||| Sbjct: 2855455 gcaaatactctcctttttatatttg 2855479
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 gcaaatactctccttgttatatttg 171 ||||||||||||||| ||||||||| Sbjct: 2855794 gcaaatactctcctttttatatttg 2855818
>gb|AC126681.4| Mus musculus BAC clone RP24-362M8 from chromosome 5, complete sequence Length = 153715 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 476 tttgcttgcacctggtggggagttt 500 |||||||||||||| |||||||||| Sbjct: 83204 tttgcttgcacctgctggggagttt 83228
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 gcaaatactctccttgttatatttg 171 ||||||||||||||| ||||||||| Sbjct: 2930220 gcaaatactctcctttttatatttg 2930244
>emb|BX640477.6| Zebrafish DNA sequence from clone DKEY-43N16 in linkage group 10, complete sequence Length = 258048 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 tgagatattttcagcaaatac 154 ||||||||||||||||||||| Sbjct: 4865 tgagatattttcagcaaatac 4845
>gb|AC025470.5| Homo sapiens chromosome 5 clone CTD-2516K3, complete sequence Length = 201687 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 agacactgttagtaacattta 426 ||||||||||||||||||||| Sbjct: 575 agacactgttagtaacattta 595
>gb|AC008780.7| Homo sapiens chromosome 5 clone CTD-2023N9, complete sequence Length = 178203 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 agacactgttagtaacattta 426 ||||||||||||||||||||| Sbjct: 174855 agacactgttagtaacattta 174875
>dbj|AB179683.1| Uncultured bacterium gene for 16S rRNA, partial sequence, clone: KNA6-EB03 Length = 1414 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 478 tgcttgcacctggtggggagt 498 ||||||||||||||||||||| Sbjct: 31 tgcttgcacctggtggggagt 51
>gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxygenase 1 (Z576C20.3), anthocyanin biosynthesis regulatory protein Pl1_B73 (Z576C20.4), putative growth-regulating factor 1 (Z576C20.6), and putative aminoalcoholphosphotransferase (Z576C20.14) genes, complete cds; and putative receptor protein kinase (Z576C20.21) gene, partial cds Length = 155173 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 ggagcatttttggctggtttg 236 ||||||||||||||||||||| Sbjct: 628 ggagcatttttggctggtttg 648
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 gcaaatactctccttgttatatttg 171 ||||||||||||||| ||||||||| Sbjct: 2855327 gcaaatactctcctttttatatttg 2855351
>gb|AC127565.5| Mus musculus BAC clone RP24-292K9 from chromosome 7, complete sequence Length = 188650 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 cgatggcactgggagcattt 224 |||||||||||||||||||| Sbjct: 99142 cgatggcactgggagcattt 99161
>emb|AL603904.5| Human DNA sequence from clone RP11-244A13 on chromosome 6, complete sequence Length = 99479 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 taaaggcaatagctgctata 62 |||||||||||||||||||| Sbjct: 88856 taaaggcaatagctgctata 88837
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 gagggcaatattggaagcta 27 |||||||||||||||||||| Sbjct: 1682494 gagggcaatattggaagcta 1682513
>emb|AL359259.18| Human DNA sequence from clone RP11-182B22 on chromosome 1 Contains the 3' end of the MTR gene for 5-methyltetrahydrofolate-homocysteine methyltransferase, a novel gene (LOC149448), a ribosomal protein L35 (RPL35) pseudogene, and a novel gene similar to metallothionein 1H (MT1H), complete sequence Length = 172753 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 acactgttagtaacatttat 427 |||||||||||||||||||| Sbjct: 54515 acactgttagtaacatttat 54534
>emb|AL034561.5|HS692C8 Human DNA sequence from clone RP4-692C8 on chromosome 20p11.22-12.2 Contains GSSs and STSs, complete sequence Length = 125698 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 attgatccaaagctgtttct 355 |||||||||||||||||||| Sbjct: 70272 attgatccaaagctgtttct 70253
>emb|AJ239004.1|SPN239004 Streptococcus pneumoniae type 8 capsular gene cluster Length = 14730 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 ggcaatattggaagctatgg 30 |||||||||||||||||||| Sbjct: 8917 ggcaatattggaagctatgg 8936
>emb|BX640499.5| Zebrafish DNA sequence from clone DKEYP-67D2 in linkage group 9, complete sequence Length = 184606 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 atattttcagcaaatactct 157 |||||||||||||||||||| Sbjct: 37627 atattttcagcaaatactct 37646
>gb|AC025031.30| Homo sapiens 12 BAC RP11-474P2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 223675 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 418 taacatttattggtagagtatttg 441 ||||||||||||||||||| |||| Sbjct: 104388 taacatttattggtagagtttttg 104411
>emb|AL929168.3| Zebrafish DNA sequence from clone DKEYP-97C5 in linkage group 4 Contains the 5' end of the gene for a novel protein similar to vertebrate KCND2 and two CpG islands, complete sequence Length = 50304 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 caaagctgtttctttcaaac 362 |||||||||||||||||||| Sbjct: 15421 caaagctgtttctttcaaac 15402
>gb|AC011509.8| Homo sapiens chromosome 19 clone CTD-2189E23, complete sequence Length = 111998 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 gcaaattgctgaaaatcgga 129 |||||||||||||||||||| Sbjct: 108177 gcaaattgctgaaaatcgga 108158
>ref|XM_678900.1| PREDICTED: Danio rerio similar to titin isoform N2-B (LOC556163), mRNA Length = 26100 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 atattttcagcaaatactct 157 |||||||||||||||||||| Sbjct: 2927 atattttcagcaaatactct 2908
>gb|AC008569.7| Homo sapiens chromosome 19 clone CTC-548K16, complete sequence Length = 227245 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 gcaaattgctgaaaatcgga 129 |||||||||||||||||||| Sbjct: 11792 gcaaattgctgaaaatcgga 11773
>gb|AF316641.1|AF316641 Streptococcus pneumoniae serotype 8 capsular polysaccharide gene cluster, complete sequence Length = 13746 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 ggcaatattggaagctatgg 30 |||||||||||||||||||| Sbjct: 8289 ggcaatattggaagctatgg 8308
>gb|AC094011.2| Gallus gallus clone WAG-50C6, complete sequence Length = 118914 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 146 agcaaatactctccttgttatatt 169 |||||||||||| ||||||||||| Sbjct: 19891 agcaaatactctgcttgttatatt 19868
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome Length = 1584804 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 caatctctttgatactaggt 389 |||||||||||||||||||| Sbjct: 615285 caatctctttgatactaggt 615304
>emb|AL772356.2| Zebrafish DNA sequence from clone BUSM1-258D18 in linkage group 9, complete sequence Length = 80182 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 atattttcagcaaatactct 157 |||||||||||||||||||| Sbjct: 19667 atattttcagcaaatactct 19648
>emb|CR931644.1| Streptococcus pneumoniae strain 573/62 (serotype 8) Length = 13844 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 ggcaatattggaagctatgg 30 |||||||||||||||||||| Sbjct: 8296 ggcaatattggaagctatgg 8315
>dbj|AK116550.1| Ciona intestinalis cDNA, clone:citb034m03, full insert sequence Length = 2214 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 gaagctatgggaatggctgc 40 |||||||||||||||||||| Sbjct: 1510 gaagctatgggaatggctgc 1529
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 ctgtttctttcaaacttccc 367 |||||||||||||||||||| Sbjct: 1217609 ctgtttctttcaaacttccc 1217590
>emb|BX548043.5| Zebrafish DNA sequence from clone DKEY-81J8 in linkage group 10, complete sequence Length = 156034 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 tgagatattttcagcaaata 153 |||||||||||||||||||| Sbjct: 125954 tgagatattttcagcaaata 125973 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,478,925 Number of Sequences: 3902068 Number of extensions: 4478925 Number of successful extensions: 78637 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78323 Number of HSP's gapped (non-prelim): 311 length of query: 504 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 482 effective length of database: 17,147,199,772 effective search space: 8264950290104 effective search space used: 8264950290104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)