>VTS1_KLULA (Q6CY29) Protein VTS1|
          Length = 459

 Score = 33.5 bits (75), Expect = 0.53
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
 Frame = +1

Query: 70  TSVQQSEVGRADLLDVTNNTE--YNLSSDYATPTAVQPEPTVQTYLQDNRQMQNISPLSN 243
           + V Q+E  +   LD   N +  Y   S     TA   +  +  YL D  + ++  P + 
Sbjct: 204 SQVHQAENPQPLNLDSVLNGDNIYRQWSPLPQNTASPMQQPMYDYLADIPRPRSADPYNA 263

Query: 244 FMQGNMANGLLPPAMPPFRELDPAFSLLLTNPPLATLVHGTPQSSVNNATVSSQPQENVN 423
           F +G +++G              A S L ++ P  T    +   S +N++ S+  ++N+N
Sbjct: 264 FKKGGLSSGNANNNS----NNGNAISNLNSSNPFGTNTVSSTNMSNSNSSSSATGRKNMN 319

Query: 424 QGGLSNPQLTHPQGSTGI 477
           Q    N  L  PQ  T I
Sbjct: 320 QNQHQNQYLNRPQSPTNI 337

>STB1_YEAST (P42845) Protein STB1 (SIN3-binding protein 1)|
          Length = 420

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 15/122 (12%)
 Frame = +1

Query: 100 ADLLDVTNNTEYNLSSDYATPTAVQPEPTVQTY---------------LQDNRQMQNISP 234
           ADLL     + YN SS + TP AV+   T ++Y                 D  +  +I P
Sbjct: 190 ADLLMYLATSPYNKSSHHGTPMAVRMPTTPRSYHYASQLSLNGNTASTSNDAVRFSHIKP 249

Query: 235 LSNFMQGNMANGLLPPAMPPFRELDPAFSLLLTNPPLATLVHGTPQSSVNNATVSSQPQE 414
            ++  Q    + LLP    P   L  + SL L+N   +     +PQ      T +  P  
Sbjct: 250 SASSPQSTFKSNLLPNF--PDESLMDSPSLYLSNNNGSVQATLSPQQRRKPTTNTLHPPS 307

Query: 415 NV 420
           NV
Sbjct: 308 NV 309

>IL3B2_MOUSE (P26954) Interleukin-3 receptor class 2 beta chain precursor|
            (Interleukin-3 receptor class II beta chain)
            (Colony-stimulating factor 2 receptor, beta 2 chain)
          Length = 878

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
 Frame = +1

Query: 139  LSSDYATP---TAVQPEPTVQTYLQDNRQMQNI-SP-----LSNFMQGNMANGLLPPAMP 291
            ++SDY TP       P   + T L  +  + +  SP     L     G+ A G  PP   
Sbjct: 706  MASDYVTPGDPVLTLPTGPLSTSLGPSLGLPSAQSPSLCLKLPRVPSGSPALG--PPGFE 763

Query: 292  PFRELDPAFSLLLTNPPLATLVHGTPQSSVNNATVSSQPQENVNQGGLSNPQLTHPQG 465
             + EL P+ S   T+PP     H  P  + +   +  +P+E V       P   HP+G
Sbjct: 764  DYVELPPSVSQAATSPP----GHPAPPVASSPTVIPGEPREEV------GPASPHPEG 811

>YBF1_YEAST (P34217) Hypothetical 73.8 kDa protein in SAS3-SEC17 intergenic|
           region
          Length = 668

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 18/160 (11%)
 Frame = +1

Query: 22  STLLLHQXSNAENPDITSVQQSEVG---RADLLDVTNNTEYNLSSDYATPTAVQPEPTVQ 192
           + ++++  S +  P I+S  Q  +     +  +++ ++++YN S+D       Q +  VQ
Sbjct: 437 NNVIINNNSASSTPKISSQGQFSMQPTLTSPKMNIHHSSQYN-SADQPQQPQPQTQQNVQ 495

Query: 193 TYLQDN----RQMQNISPLSNFMQGNMANGLLPPAMPPF---RELDPAFSLLLTN----- 336
           +  Q      RQ   ++P S    G  AN     ++ P     ++ P  S +  N     
Sbjct: 496 SAAQQQQSFLRQQATLTPSSRIPSGYSANHYQINSVNPLLRNSQISPPNSQIPINSQTLS 555

Query: 337 ---PPLATLVHGTPQSSVNNATVSSQPQENVNQGGLSNPQ 447
              PP  +        +  NA++SSQ   N+N    +N Q
Sbjct: 556 QAQPPAQSQTQQRVPVAYQNASLSSQQLYNLNGPSSANSQ 595

>PO2F2_PIG (Q29013) POU domain, class 2, transcription factor 2|
           (Octamer-binding transcription factor 2) (Oct-2) (OTF-2)
           (Lymphoid-restricted immunoglobulin octamer-binding
           protein NF-A2)
          Length = 478

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
 Frame = +1

Query: 160 PTAVQPEPT-VQTYLQDNRQMQNISPLSNFMQGNMANG--LLPPA---MPPFRELDPAFS 321
           P AVQ   + VQ  L   +   +I  +    Q  +  G  L PPA   +P  ++  P   
Sbjct: 80  PQAVQAHLSQVQLMLTGRQLAGDIQQILQLQQLVLVPGHHLQPPAQFLLPQAQQSQPG-- 137

Query: 322 LLLTNPPLATLVHGTPQSSVNNATVSSQPQENVNQGGLSNPQLTHPQ 462
            LL  P L  L   T  + + +   +  P + V +  LS+P L+HPQ
Sbjct: 138 -LLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLSDPHLSHPQ 183

>DCP2_ASHGO (Q75BK1) mRNA decapping enzyme 2 (EC 3.-.-.-)|
          Length = 880

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 10/154 (6%)
 Frame = +1

Query: 37   HQXSNAENPDITSVQQSEVGRADLLDVTNNTEYNLSSDYATPTAVQPEPTVQTYLQDNRQ 216
            H+ S+ E+    S    +    + L++    +    ++      + P P     +Q++  
Sbjct: 690  HRKSDDESSPRHSPVSQQARTHEFLNLLKRPQAKAENEELQSVLLTP-PANSGMVQNSST 748

Query: 217  MQNISPLSNFMQGNMANGLLPPAMPPFRELDPAFS------LLLTNPPLAT----LVHGT 366
            + NI P  N  Q   A  L P   P F++   A +      L +   P +     L   T
Sbjct: 749  LPNI-PYGNLHQDQAAALLFPQQPPQFQQPYAATNTNSKELLAILRKPASNQQKQLHEQT 807

Query: 367  PQSSVNNATVSSQPQENVNQGGLSNPQLTHPQGS 468
            P + V+  T  +  Q+N+ +  +SNP  +  QG+
Sbjct: 808  PANPVDQPTTLASEQQNLVKQQISNPSQSLQQGT 841

>ACM1_DROME (P16395) Muscarinic acetylcholine receptor DM1|
          Length = 805

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 31/116 (26%), Positives = 46/116 (39%)
 Frame = +1

Query: 94  GRADLLDVTNNTEYNLSSDYATPTAVQPEPTVQTYLQDNRQMQNISPLSNFMQGNMANGL 273
           GR D  D     E      YATP  +  E  +Q+ +     M  +    N+  G   +G+
Sbjct: 408 GREDSDDFAYEQEEPSDLGYATPVTI--ETPLQSSVSRCTSMNVMR--DNYSMGGSVSGV 463

Query: 274 LPPAMPPFRELDPAFSLLLTNPPLATLVHGTPQSSVNNATVSSQPQENVNQGGLSN 441
            PP++     L       L  PPLA++      S+V  +T +     NVN  G  N
Sbjct: 464 RPPSIL----LSDVSPTPLPRPPLASISQLQEMSAVTASTTA-----NVNTSGNGN 510

>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein|
          Length = 1509

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 37/150 (24%), Positives = 55/150 (36%), Gaps = 1/150 (0%)
 Frame = +1

Query: 31  LLHQXSNAENPDITSVQQSEVGRADLLDVTNNTEYNLSSDYATPTAVQPEPTVQTYLQDN 210
           +L   S A +  I S    +VG+  L  +  +         + PT  QP P         
Sbjct: 478 VLAPHSGAHSAHILSAAPIQVGQPALFQMPVSLAAG-----SLPTQSQPAPAGPAA---T 529

Query: 211 RQMQNIS-PLSNFMQGNMANGLLPPAMPPFRELDPAFSLLLTNPPLATLVHGTPQSSVNN 387
             +Q ++ P S     N  +GL+ PA P     + A  L +   P A     TP      
Sbjct: 530 TVLQGVTLPPSAVAMLNTPDGLVQPATPAAATGEAAPVLTVQPAPQAPPAVSTPLPLGLQ 589

Query: 388 ATVSSQPQENVNQGGLSNPQLTHPQGSTGI 477
              + QP +       + PQ T PQ S G+
Sbjct: 590 QPQAQQPPQAPTPQAAAPPQATTPQPSPGL 619

>GLGL3_SOLTU (P55243) Glucose-1-phosphate adenylyltransferase large subunit 3,|
           chloroplast precursor (EC 2.7.7.27) (ADP-glucose
           synthase) (ADP-glucose pyrophosphorylase) (AGPase S)
           (Alpha-D-glucose-1-phosphate adenyl transferase)
          Length = 483

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
 Frame = +1

Query: 19  TSTLLLHQXSNAENPDITSVQQSEVGRADLLDVTNNTEYNLSSDYATPT--AVQPEPTVQ 192
           T+ L L      E P I S+ +  V + D+L       +  ++D+ +    A   E  V+
Sbjct: 244 TTVLGLSPEEAKEKPYIASIGKVYVFKKDILLNLLRWRFPTANDFGSEIIPASTKEFCVK 303

Query: 193 TYLQDNRQMQNISPLSNFMQGNMANGLLPPAMPPFRELDPAFSLLLTNPPLATLVHGTPQ 372
            YL  N   ++I  + +F + N+A            E  P FS      P+ T     P 
Sbjct: 304 AYLF-NDYWEDIGTIRSFFRANLA----------LTEHPPRFSFYDATKPIYTSRRNLPP 352

Query: 373 SSVNNATV 396
           S+++N+ +
Sbjct: 353 SAIDNSKI 360

>NIF1_SCHPO (P87159) Mitosis inhibitor nif1 (Nim1-interacting factor 1)|
          Length = 681

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 23/85 (27%), Positives = 35/85 (41%)
 Frame = +1

Query: 85  SEVGRADLLDVTNNTEYNLSSDYATPTAVQPEPTVQTYLQDNRQMQNISPLSNFMQGNMA 264
           S  G  DL D T+  +Y     ++    V P     +Y  +N          +F   N  
Sbjct: 125 SVFGTPDLEDETDFFDY-----FSAAPDVHPNDIFDSYNSNNIA-------ESFDDDNYY 172

Query: 265 NGLLPPAMPPFRELDPAFSLLLTNP 339
           N LLPP  P + E++P  +   T+P
Sbjct: 173 NSLLPPNAPYYHEIEPPRTASNTSP 197

>AREA_EMENI (P17429) Nitrogen regulatory protein areA|
          Length = 876

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 16/107 (14%)
 Frame = +1

Query: 175 PEPTVQTY----LQDNRQMQNISPLSNFMQGNMANGL---------LPPAMPPFRE---L 306
           PE T+ T     LQ+    Q ++   N    NMA  L         + P+  P+++    
Sbjct: 302 PEYTLDTSHGLSLQNQMNAQQLANAQNHTSPNMAFALDTFNLGDDPILPSAGPYQQQFTF 361

Query: 307 DPAFSLLLTNPPLATLVHGTPQSSVNNATVSSQPQENVNQGGLSNPQ 447
            P+ S + +  P A L   TP +S  N+T    P  +  Q   S PQ
Sbjct: 362 SPSESPMTSGNPFANLYAQTPIASSLNSTDFFSPPPSGYQSTASTPQ 408

>PCX1_HUMAN (Q96RV3) Pecanex-like protein 1 (Pecanex homolog)|
          Length = 2341

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 382  NNATVSSQPQENVNQGGLSNP 444
            NNAT ++ P  NV QG + NP
Sbjct: 2061 NNATTANNPHSNVTQGSIGNP 2081

>VKGC_RAT (O88496) Vitamin K-dependent gamma-carboxylase (EC 6.4.-.-)|
           (Gamma-glutamyl carboxylase) (Vitamin K gamma glutamyl
           carboxylase)
          Length = 758

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
 Frame = +1

Query: 172 QPEPTVQTYLQDNRQMQNISPLSNFMQGNMANGLLPPAMPPFRELDPAFSLLLTNPPLAT 351
           +P P VQT+L+  R++Q I    N          +   +  FR      S L+T   L  
Sbjct: 651 EPTPLVQTFLRRQRKLQEIERRRNSPLHERFLRFVLRKLYVFRR-----SFLMTRISLRN 705

Query: 352 LVHGTP---QSSVNNATVSSQPQENVNQGGLSNPQLTHPQGS 468
           L+ G P   Q +      + +P E V++   SN   + P  S
Sbjct: 706 LLFGRPSLEQLAQEVTYANLRPFEPVDESSASNTDSSDPHPS 747

>M3K1_HUMAN (Q13233) Mitogen-activated protein kinase kinase kinase 1 (EC|
            2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1)
            (MEKK 1) (Fragment)
          Length = 1495

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 142  SSDYATPTAVQPEPTVQTYLQDNRQMQNISPLSNFMQ 252
            S+   T T  QP+P VQT  + + Q  N SPLS+  Q
Sbjct: 924  STTTTTTTTEQPKPMVQTKGRPHSQCLNSSPLSHHSQ 960

>PYGO2_HUMAN (Q9BRQ0) Pygopus homolog 2|
          Length = 406

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 12/94 (12%)
 Frame = +1

Query: 229 SPLSNFMQGNMANGLLPPAMPPFRELDPAF-------SLLLTNPPLATLV-----HGTPQ 372
           SPL    QG  +   LPP   PF   DP F            NPP +T        G+P 
Sbjct: 225 SPLQRPGQGLPS---LPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPA 281

Query: 373 SSVNNATVSSQPQENVNQGGLSNPQLTHPQGSTG 474
           ++VN    S  P  +   GG  +     P G  G
Sbjct: 282 AAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAG 315


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.310    0.129    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,895,061
Number of Sequences: 219361
Number of extensions: 2028547
Number of successful extensions: 4822
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4810
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)