Clone Information

BLAST Search Result

Clone Name	basd27d04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PRS7_ORYSA (Q9FXT9) 26S protease regulatory subunit 7 (26S prote...	338	9e-93
2	PRS7_PRUPE (O64982) 26S protease regulatory subunit 7 (26S prote...	323	3e-88
3	PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 (26S prote...	318	7e-87
4	PRS7_SPIOL (Q41365) 26S protease regulatory subunit 7 (26S prote...	316	3e-86
5	PRS7_RAT (Q63347) 26S protease regulatory subunit 7 (MSS1 protein)	244	1e-64
6	PRS7_MOUSE (P46471) 26S protease regulatory subunit 7 (MSS1 prot...	244	1e-64
7	PRS7_HUMAN (P35998) 26S protease regulatory subunit 7 (MSS1 prot...	244	1e-64
8	PRS7_XENLA (P46472) 26S protease regulatory subunit 7 (MSS1 prot...	243	2e-64
9	PRS7_CAEEL (Q18787) Probable 26S protease regulatory subunit 7	236	3e-62
10	PRS7_SCHPO (O42931) 26S protease regulatory subunit 7 homolog	226	5e-59
11	PRS7_YEAST (P33299) 26S protease regulatory subunit 7 homolog (C...	214	2e-55
12	PRS8_MANSE (P54814) 26S protease regulatory subunit 8 (18-56 pro...	58	2e-08
13	PRS8_NAEFO (Q25544) 26S protease regulatory subunit 8 homolog (T...	58	2e-08
14	PRS8_DROME (O18413) 26S protease regulatory subunit 8	57	3e-08
15	PRS8_DICDI (P34124) 26S protease regulatory subunit 8 (TAT-bindi...	55	1e-07
16	PRS8_RAT (P62198) 26S protease regulatory subunit 8 (Proteasome ...	55	2e-07
17	PRS8_PIG (P62197) 26S protease regulatory subunit 8 (Proteasome ...	55	2e-07
18	PRS8_MOUSE (P62196) 26S protease regulatory subunit 8 (Proteasom...	55	2e-07
19	PRS8_HUMAN (P62195) 26S protease regulatory subunit 8 (Proteasom...	55	2e-07
20	PRS8_BOVIN (P62194) 26S protease regulatory subunit 8 (Proteasom...	55	2e-07
21	PRS8_XENLA (P46470) 26S protease regulatory subunit 8 (SUG1 homo...	55	2e-07
22	PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteaso...	55	2e-07
23	PRS8_SCHPO (P41836) 26S protease regulatory subunit 8 homolog (P...	54	4e-07
24	PRS8_YEAST (Q01939) 26S protease regulatory subunit 8 homolog (S...	53	6e-07
25	PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteaso...	51	2e-06
26	PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteaso...	51	3e-06
27	PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog	49	1e-05
28	PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S1...	49	1e-05
29	PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteaso...	49	1e-05
30	PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteaso...	49	1e-05
31	PRS6A_BRACM (O23894) 26S protease regulatory subunit 6A homolog ...	49	1e-05
32	PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteaso...	47	3e-05
33	PRS10_SCHPO (O74445) Probable 26S protease subunit rpt4	47	3e-05
34	PRS6A_ARATH (O04019) 26S protease regulatory subunit 6A homolog ...	47	3e-05
35	PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteaso...	47	4e-05
36	PRS6A_ORYSA (P46465) 26S protease regulatory subunit 6A homolog ...	47	5e-05
37	PRS6A_YEAST (P33297) 26S protease regulatory subunit 6A (TAT-bin...	46	7e-05
38	PRS6A_LYCES (P54776) 26S protease regulatory subunit 6A homolog ...	46	9e-05
39	PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease sub...	45	1e-04
40	PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteaso...	45	1e-04
41	PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog	44	3e-04
42	PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Prote...	44	5e-04
43	PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Prote...	44	5e-04
44	PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Prote...	44	5e-04
45	PRS6B_YEAST (P33298) 26S protease regulatory subunit 6B homolog ...	44	5e-04
46	PRS6A_SCHPO (O14126) 26S protease regulatory subunit 6A	44	5e-04
47	PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteaso...	43	6e-04
48	PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteaso...	42	0.001
49	PRS6B_ARATH (Q9SEI4) 26S protease regulatory subunit 6B homolog ...	42	0.001
50	PRS6B_ENCCU (Q8SQI9) 26S protease regulatory subunit 6B homolog	42	0.001
51	PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog	42	0.002
52	PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteaso...	42	0.002
53	PR6AA_XENLA (O42587) 26S protease regulatory subunit 6A-A (TAT-b...	42	0.002
54	PR6AB_XENLA (O42586) 26S protease regulatory subunit 6A-B (TAT-b...	42	0.002
55	PRS6A_RAT (Q63569) 26S protease regulatory subunit 6A (TAT-bindi...	42	0.002
56	PRS6A_HUMAN (P17980) 26S protease regulatory subunit 6A (TAT-bin...	42	0.002
57	PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase ...	41	0.002
58	PRS6A_MOUSE (O88685) 26S protease regulatory subunit 6A (TAT-bin...	41	0.003
59	PRS6B_CAEEL (P46502) Probable 26S protease regulatory subunit 6B	40	0.005
60	PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-bindi...	39	0.009
61	PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)...	39	0.009
62	PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)...	39	0.015
63	PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)	38	0.025
64	PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4	37	0.043
65	PRS6B_DICDI (P34123) 26S protease regulatory subunit 6B homolog ...	36	0.073
66	PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Pro...	36	0.096
67	PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (P...	36	0.096
68	PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (P...	36	0.096
69	TXND2_MOUSE (Q6P902) Thioredoxin domain-containing protein 2 (Sp...	36	0.096
70	PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (T...	36	0.096
71	PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (T...	36	0.096
72	PSMR_SULTO (Q975U2) Proteasome-activating nucleotidase (Proteaso...	35	0.21
73	PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (P...	35	0.21
74	PSMR1_HALSA (Q9HNP9) Proteasome-activating nucleotidase 1 (Prote...	34	0.28
75	OPS5_DROME (P91657) Opsin Rh5	34	0.28
76	PSMR2_HALSA (Q9HRW6) Proteasome-activating nucleotidase 2 (Prote...	33	0.48
77	PRDM9_HUMAN (Q9NQV7) PR domain zinc finger protein 9 (PR domain-...	33	0.81
78	SRA6_CAEEL (Q09208) Serpentine receptor class alpha-6 (Protein s...	33	0.81
79	PRP16_HUMAN (Q92620) Pre-mRNA-splicing factor ATP-dependent RNA ...	32	1.8
80	IF3_SERMA (P33320) Translation initiation factor IF-3	31	3.1
81	FMNL_MOUSE (Q9JL26) Formin-like 1 protein (Formin-related protein)	31	3.1
82	KCNH7_MOUSE (Q9ER47) Potassium voltage-gated channel subfamily H...	30	4.0
83	PRP28_ASPOR (Q2UH00) Pre-mRNA splicing ATP-dependent RNA helicas...	30	4.0
84	Y830_STAAC (Q5HHQ3) UPF0042 protein SACOL0830	30	5.3
85	Y820_STAAR (Q6GIM6) UPF0042 protein SAR0820	30	5.3
86	Y765_STAAM (P67108) UPF0042 protein SAV0765	30	5.3
87	Y730_STAAS (Q6GB65) UPF0042 protein SAS0730	30	5.3
88	Y727_STAAW (P67110) UPF0042 protein MW0727	30	5.3
89	Y720_STAAN (P67109) UPF0042 protein SA0720	30	5.3
90	YLE5_CAEEL (P46941) Hypothetical protein C38D4.5 in chromosome III	30	5.3
91	HMCN1_HUMAN (Q96RW7) Hemicentin-1 precursor (Fibulin-6) (FIBL-6)	30	6.9
92	GATB_AQUAE (O66766) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe...	30	6.9
93	HRP_PLABE (Q08168) 58 kDa phosphoprotein (Heat shock-related pro...	30	6.9
94	RPA1_MOUSE (O35134) DNA-directed RNA polymerase I largest subuni...	29	9.0
95	RBL_MEDSA (P04991) Ribulose bisphosphate carboxylase large chain...	29	9.0
96	TIG_BUCAP (Q8K991) Trigger factor (TF)	29	9.0
97	AVIL_MOUSE (O88398) Advillin (p92) (Actin-binding protein DOC6)	29	9.0
98	VAT_THEAC (O05209) VCP-like ATPase	29	9.0
99	ATI_CAMPS (Q775Q2) A-type inclusion protein (ATI)	29	9.0
100	ATI_CAMPM (Q8V2M9) A-type inclusion protein (ATI)	29	9.0
101	ATI_CAMPC (Q05482) A-type inclusion protein (ATI)	29	9.0

>PRS7_ORYSA (Q9FXT9) 26S protease regulatory subunit 7 (26S proteasome subunit|
           7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory
           particle triple-A ATPase subunit 1)
          Length = 426

 Score =  338 bits (866), Expect = 9e-93
 Identities = 165/172 (95%), Positives = 169/172 (98%)
 Frame = +3

Query: 81  MAPEPEDDIMAEKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKELAKRINDLCGIKE 260
           MAPEPEDDIM EKNPRPLDEDDIALLKTYGLGPYSTSIK  EKEIKE+AK+INDLCGIKE
Sbjct: 1   MAPEPEDDIMNEKNPRPLDEDDIALLKTYGLGPYSTSIKKVEKEIKEMAKKINDLCGIKE 60

Query: 261 SDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGD 440
           SDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKII+PNTDDAKY+INVKQIAKFVVGLGD
Sbjct: 61  SDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIAKFVVGLGD 120

Query: 441 KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG
Sbjct: 121 KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 172

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>PRS7_PRUPE (O64982) 26S protease regulatory subunit 7 (26S proteasome subunit|
           7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory
           particle triple-A ATPase subunit 1)
          Length = 425

 Score =  323 bits (827), Expect = 3e-88
 Identities = 159/172 (92%), Positives = 166/172 (96%)
 Frame = +3

Query: 81  MAPEPEDDIMAEKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKELAKRINDLCGIKE 260
           MAPEPED I  EKNPRPLDEDDIALLKTYGLGPYST IK AEKE+K+LAK++NDLCGIKE
Sbjct: 1   MAPEPED-IKDEKNPRPLDEDDIALLKTYGLGPYSTHIKKAEKEVKDLAKKVNDLCGIKE 59

Query: 261 SDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGD 440
           SDTGLA PSQWDLVSDKQMMQEEQPLQVARCTKIINPN++DAKY+INVKQIAKFVVGLGD
Sbjct: 60  SDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGD 119

Query: 441 KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG
Sbjct: 120 KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 171

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>PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 (26S proteasome subunit|
           7) (26S proteasome AAA-ATPase subunit RPT1a) (Regulatory
           particle triple-A ATPase subunit 1a)
          Length = 426

 Score =  318 bits (815), Expect = 7e-87
 Identities = 156/172 (90%), Positives = 163/172 (94%)
 Frame = +3

Query: 81  MAPEPEDDIMAEKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKELAKRINDLCGIKE 260
           M  + ED+I  EKNPRPLDEDDIALLKTYGLGPYS  IK  EKEIK+LAK+INDLCGIKE
Sbjct: 1   MVRDIEDEIRDEKNPRPLDEDDIALLKTYGLGPYSAPIKKVEKEIKDLAKKINDLCGIKE 60

Query: 261 SDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGD 440
           SDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKII+PNT+DAKY+INVKQIAKFVVGLGD
Sbjct: 61  SDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIISPNTEDAKYVINVKQIAKFVVGLGD 120

Query: 441 KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG
Sbjct: 121 KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 172

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>PRS7_SPIOL (Q41365) 26S protease regulatory subunit 7 (26S proteasome subunit|
           7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory
           particle triple-A ATPase subunit 1)
          Length = 426

 Score =  316 bits (810), Expect = 3e-86
 Identities = 155/172 (90%), Positives = 163/172 (94%)
 Frame = +3

Query: 81  MAPEPEDDIMAEKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKELAKRINDLCGIKE 260
           MA E EDD+  EKNPRPLDEDDIALLKTYGLGPYS SIK  EKEIK+++K++NDL GIKE
Sbjct: 1   MAIEHEDDLKDEKNPRPLDEDDIALLKTYGLGPYSASIKKVEKEIKDMSKKVNDLIGIKE 60

Query: 261 SDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGD 440
           SDTGLA PSQWDLVSDKQMMQEEQPLQVARCTKIINPNT+DAKY+INVKQIAKFVVGLGD
Sbjct: 61  SDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTEDAKYVINVKQIAKFVVGLGD 120

Query: 441 KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG
Sbjct: 121 KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 172

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>PRS7_RAT (Q63347) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 432

 Score =  244 bits (624), Expect = 1e-64
 Identities = 124/184 (67%), Positives = 145/184 (78%)
 Frame = +3

Query: 45  PDTASARRREDAMAPEPEDDIMAEKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKEL 224
           PD   A +R+       ++D   +K  R LDE DIALLKTYG   YS  IK  E +I++L
Sbjct: 1   PDYLGADQRKT------KEDEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQL 54

Query: 225 AKRINDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINV 404
            K+IN+L GIKESDTGLAPP+ WDL +DKQ +Q EQPLQVARCTKIIN +++D KY+INV
Sbjct: 55  LKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINV 114

Query: 405 KQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYN 584
           KQ AKFVV L D+V+PTDIEEGMRVGVDRNKYQI IPLPPKIDP+VTMM VEEKPDVTY+
Sbjct: 115 KQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYS 174

Query: 585 DVGG 596
           DVGG
Sbjct: 175 DVGG 178

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>PRS7_MOUSE (P46471) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 432

 Score =  244 bits (624), Expect = 1e-64
 Identities = 126/184 (68%), Positives = 145/184 (78%)
 Frame = +3

Query: 45  PDTASARRREDAMAPEPEDDIMAEKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKEL 224
           PD   A +R+     E E D   +K  R LDE DIALLKTYG   YS  IK  E +I++L
Sbjct: 1   PDYLGADQRK---TKEEEKD---DKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQL 54

Query: 225 AKRINDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINV 404
            K+IN+L GIKESDTGLAPP+ WDL +DKQ +Q EQPLQVARCTKIIN +++D KY+INV
Sbjct: 55  LKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINV 114

Query: 405 KQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYN 584
           KQ AKFVV L D+V+PTDIEEGMRVGVDRNKYQI IPLPPKIDP+VTMM VEEKPDVTY+
Sbjct: 115 KQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYS 174

Query: 585 DVGG 596
           DVGG
Sbjct: 175 DVGG 178

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>PRS7_HUMAN (P35998) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 432

 Score =  244 bits (624), Expect = 1e-64
 Identities = 124/184 (67%), Positives = 145/184 (78%)
 Frame = +3

Query: 45  PDTASARRREDAMAPEPEDDIMAEKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKEL 224
           PD   A +R+       ++D   +K  R LDE DIALLKTYG   YS  IK  E +I++L
Sbjct: 1   PDYLGADQRKT------KEDEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQL 54

Query: 225 AKRINDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINV 404
            K+IN+L GIKESDTGLAPP+ WDL +DKQ +Q EQPLQVARCTKIIN +++D KY+INV
Sbjct: 55  LKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINV 114

Query: 405 KQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYN 584
           KQ AKFVV L D+V+PTDIEEGMRVGVDRNKYQI IPLPPKIDP+VTMM VEEKPDVTY+
Sbjct: 115 KQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYS 174

Query: 585 DVGG 596
           DVGG
Sbjct: 175 DVGG 178

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>PRS7_XENLA (P46472) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 433

 Score =  243 bits (621), Expect = 2e-64
 Identities = 123/184 (66%), Positives = 145/184 (78%)
 Frame = +3

Query: 45  PDTASARRREDAMAPEPEDDIMAEKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKEL 224
           PD   A +R+       +++   +K  R LDE DIALLKTYG   YS  IK  E +I++L
Sbjct: 2   PDYLGADQRKT------KEEEKEDKPIRSLDEGDIALLKTYGQSTYSRQIKQVEDDIQQL 55

Query: 225 AKRINDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINV 404
            K+IN+L GIKESDTGLAPP+ WDL +DKQ +Q EQPLQVARCTKIIN +++D KY+INV
Sbjct: 56  LKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINV 115

Query: 405 KQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYN 584
           KQ AKFVV L D+V+PTDIEEGMRVGVDRNKYQI IPLPPKIDP+VTMM VEEKPDVTY+
Sbjct: 116 KQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYS 175

Query: 585 DVGG 596
           DVGG
Sbjct: 176 DVGG 179

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>PRS7_CAEEL (Q18787) Probable 26S protease regulatory subunit 7|
          Length = 435

 Score =  236 bits (603), Expect = 3e-62
 Identities = 113/175 (64%), Positives = 138/175 (78%)
 Frame = +3

Query: 72  EDAMAPEPEDDIMAEKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKELAKRINDLCG 251
           +D    + +D    EKN + LDE DIA+LK YG GPY+  +KT + +I+   K++N+L G
Sbjct: 7   DDMRKTKKDDTKEEEKNFQALDEGDIAVLKRYGQGPYAEQLKTLDADIENCLKKVNELSG 66

Query: 252 IKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVG 431
           +KESDTGLAPP+ WD+ +DKQ MQ+EQPLQVARCTKII  +  D +Y+INVKQ AKFVV 
Sbjct: 67  VKESDTGLAPPALWDIAADKQAMQQEQPLQVARCTKIITSDKHDPRYLINVKQFAKFVVD 126

Query: 432 LGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           L D V+PTDIEEGMRVGVDRNKYQI +PLP KIDP+VTMM VEEKPDVTY+DVGG
Sbjct: 127 LADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEKPDVTYSDVGG 181

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>PRS7_SCHPO (O42931) 26S protease regulatory subunit 7 homolog|
          Length = 438

 Score =  226 bits (575), Expect = 5e-59
 Identities = 112/163 (68%), Positives = 129/163 (79%), Gaps = 2/163 (1%)
 Frame = +3

Query: 114 EKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKELAKRINDLCGIKESDTGLAPPSQW 293
           +KNP PLDE DI LLK+Y  GPY+  +   +++ + + KRIND  GIKESDTGLAP S W
Sbjct: 21  DKNPPPLDEGDIELLKSYATGPYARELAAIKEDTEAVLKRINDTVGIKESDTGLAPISFW 80

Query: 294 DLVSDKQMMQEEQPLQVARCTKIINPNTDDAK--YMINVKQIAKFVVGLGDKVSPTDIEE 467
           D+ +D+Q M EEQPLQVARCTKII       K  Y+IN+KQIAKFVV LG++VSPTDIEE
Sbjct: 81  DVAADRQRMSEEQPLQVARCTKIIENEQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEE 140

Query: 468 GMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           GMRVG DRNKY IQ+PLPPKIDPSVTMM VEEKPDVTY DVGG
Sbjct: 141 GMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGG 183

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>PRS7_YEAST (P33299) 26S protease regulatory subunit 7 homolog (CIM5 protein)|
           (TAT-binding homolog 3)
          Length = 467

 Score =  214 bits (545), Expect = 2e-55
 Identities = 109/199 (54%), Positives = 136/199 (68%), Gaps = 30/199 (15%)
 Frame = +3

Query: 90  EPEDDIMAEKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKELAKRINDLCGIKESDT 269
           +P+DD +      PL E DI +LK+YG  PY+  +K  E ++K++  RI +  G+KESDT
Sbjct: 20  KPDDDKIV-----PLTEGDIQVLKSYGAAPYAAKLKQTENDLKDIEARIKEKAGVKESDT 74

Query: 270 GLAPPSQWDLVSDKQMMQEEQPLQVARCTKIINPN------------------------- 374
           GLAP   WD++ D+Q + EE PLQVARCTKII  N                         
Sbjct: 75  GLAPSHLWDIMGDRQRLGEEHPLQVARCTKIIKGNGESDETTTDNNNSGNSNSNSNQQST 134

Query: 375 -----TDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPS 539
                 +DAKY+IN+KQIAKFVVGLG++VSPTDIEEGMRVGVDR+KY I++PLPP+IDPS
Sbjct: 135 DADEDDEDAKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPS 194

Query: 540 VTMMTVEEKPDVTYNDVGG 596
           VTMMTVEEKPDVTY+DVGG
Sbjct: 195 VTMMTVEEKPDVTYSDVGG 213

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>PRS8_MANSE (P54814) 26S protease regulatory subunit 8 (18-56 protein)|
          Length = 402

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
 Frame = +3

Query: 294 DLVSDKQMMQEEQPL---QVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIE 464
           +L +  +M++EE  L   Q +   +++ P  D  K ++ V    KFVV L   V   D+ 
Sbjct: 47  ELNAKVRMLREELQLLQEQGSYVGEVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVT 105

Query: 465 EGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
              RV +    Y +   LP K+DP V++M VE+ PD TY  VGG
Sbjct: 106 ANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG 149

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>PRS8_NAEFO (Q25544) 26S protease regulatory subunit 8 homolog (TAT-binding|
           protein homolog)
          Length = 414

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 27/70 (38%), Positives = 41/70 (58%)
 Frame = +3

Query: 387 KYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEK 566
           K +I + Q  K++V +   +   D+  G+RV +  + Y +   LP KIDP V++M VE+ 
Sbjct: 91  KVLIKISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLMKVEKV 150

Query: 567 PDVTYNDVGG 596
           PD TY  VGG
Sbjct: 151 PDATYEMVGG 160

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>PRS8_DROME (O18413) 26S protease regulatory subunit 8|
          Length = 405

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
 Frame = +3

Query: 294 DLVSDKQMMQEEQPL---QVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIE 464
           +L +  +M++EE  L   Q +   +++ P  D  K ++ V    KFVV L   +   D+ 
Sbjct: 50  ELNAKVRMLREELQLLQEQGSYVGEVVKP-MDKKKVLVKVHPEGKFVVDLDKNIDINDVT 108

Query: 465 EGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
              RV +    Y +   LP K+DP V++M VE+ PD TY  VGG
Sbjct: 109 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG 152

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>PRS8_DICDI (P34124) 26S protease regulatory subunit 8 (TAT-binding protein|
           homolog 10) (Fragment)
          Length = 389

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 6/135 (4%)
 Frame = +3

Query: 210 EIKELAKRINDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPL------QVARCTKIINP 371
           +I+EL  ++N+    K  D       + +L +  +M++EE  L       VA   K++  
Sbjct: 9   KIEELEIKVNE----KAQDLRRLEAQRNELNNRVRMLKEELQLLTNPGSHVAEVVKLMGK 64

Query: 372 NTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMM 551
           N    K ++ V    KFVV +   V    +    R  +    Y +   LP KIDP V++M
Sbjct: 65  N----KVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPNKIDPLVSLM 120

Query: 552 TVEEKPDVTYNDVGG 596
            VE+ PD TY+ VGG
Sbjct: 121 KVEKIPDSTYDMVGG 135

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>PRS8_RAT (P62198) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid
           hormone receptor-interacting protein 1) (TRIP1)
          Length = 406

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 30/100 (30%), Positives = 50/100 (50%)
 Frame = +3

Query: 297 LVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMR 476
           L+ ++  + +EQ   V    + +    D  K ++ V    KFVV +   +   D+    R
Sbjct: 58  LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCR 113

Query: 477 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           V +  + Y +   LP K+DP V++M VE+ PD TY  +GG
Sbjct: 114 VALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGG 153

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>PRS8_PIG (P62197) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (TAT-binding
           protein homolog 10) (TBP10)
          Length = 406

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 30/100 (30%), Positives = 50/100 (50%)
 Frame = +3

Query: 297 LVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMR 476
           L+ ++  + +EQ   V    + +    D  K ++ V    KFVV +   +   D+    R
Sbjct: 58  LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCR 113

Query: 477 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           V +  + Y +   LP K+DP V++M VE+ PD TY  +GG
Sbjct: 114 VALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGG 153

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>PRS8_MOUSE (P62196) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (mSUG1)
          Length = 406

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 30/100 (30%), Positives = 50/100 (50%)
 Frame = +3

Query: 297 LVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMR 476
           L+ ++  + +EQ   V    + +    D  K ++ V    KFVV +   +   D+    R
Sbjct: 58  LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCR 113

Query: 477 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           V +  + Y +   LP K+DP V++M VE+ PD TY  +GG
Sbjct: 114 VALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGG 153

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>PRS8_HUMAN (P62195) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid
           hormone receptor-interacting protein 1) (TRIP1)
          Length = 406

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 30/100 (30%), Positives = 50/100 (50%)
 Frame = +3

Query: 297 LVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMR 476
           L+ ++  + +EQ   V    + +    D  K ++ V    KFVV +   +   D+    R
Sbjct: 58  LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCR 113

Query: 477 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           V +  + Y +   LP K+DP V++M VE+ PD TY  +GG
Sbjct: 114 VALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGG 153

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>PRS8_BOVIN (P62194) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5)
          Length = 406

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 30/100 (30%), Positives = 50/100 (50%)
 Frame = +3

Query: 297 LVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMR 476
           L+ ++  + +EQ   V    + +    D  K ++ V    KFVV +   +   D+    R
Sbjct: 58  LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCR 113

Query: 477 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           V +  + Y +   LP K+DP V++M VE+ PD TY  +GG
Sbjct: 114 VALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGG 153

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>PRS8_XENLA (P46470) 26S protease regulatory subunit 8 (SUG1 homolog) (xSUG1)|
          Length = 461

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 30/100 (30%), Positives = 50/100 (50%)
 Frame = +3

Query: 297 LVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMR 476
           L+ ++  + +EQ   V    + +    D  K ++ V    KFVV +   +   D+    R
Sbjct: 53  LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCR 108

Query: 477 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           V +  + Y +   LP K+DP V++M VE+ PD TY  +GG
Sbjct: 109 VALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGG 148

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>PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 410

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 30/88 (34%), Positives = 46/88 (52%)
 Frame = +3

Query: 333 PLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 512
           PL +A  T+++    DD +  +       FV+     +    +E G RV +++  + I  
Sbjct: 72  PLVIATVTEVL----DDHRVAVKSTTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVD 127

Query: 513 PLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
            LP + DP VT M VEEKPDV+Y  +GG
Sbjct: 128 VLPSEKDPVVTGMEVEEKPDVSYEQIGG 155

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>PRS8_SCHPO (P41836) 26S protease regulatory subunit 8 homolog (Protein let1)|
          Length = 403

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 31/100 (31%), Positives = 52/100 (52%)
 Frame = +3

Query: 297 LVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMR 476
           L+ ++  + +E    V    K +  N    K ++ V    K+VV +   +   +I+  +R
Sbjct: 54  LLREEIQLLQEPGSYVGEVIKTMGKN----KVLVKVHPEGKYVVDISPDIDIKEIKPNIR 109

Query: 477 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           V +  + YQ+   LP K+DP V++M VE+ PD TY  VGG
Sbjct: 110 VALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGG 149

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>PRS8_YEAST (Q01939) 26S protease regulatory subunit 8 homolog (SUG1 protein)|
           (CIM3 protein) (TAT-binding protein TBY1)
          Length = 405

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 29/99 (29%), Positives = 52/99 (52%)
 Frame = +3

Query: 300 VSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRV 479
           + D+  + +E    V    KI++    D K ++ V+   K++V +   ++  D++   RV
Sbjct: 58  IKDELRLLQEPGSYVGEVIKIVS----DKKVLVKVQPEGKYIVDVAKDINVKDLKASQRV 113

Query: 480 GVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
            +  + Y +   L  K DP V++M VE+ PD TY+ VGG
Sbjct: 114 CLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGG 152

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>PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 436

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 32/100 (32%), Positives = 51/100 (51%)
 Frame = +3

Query: 297 LVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMR 476
           L SD Q M++  PL V    +I+    DD + ++      KFV  +   V   ++E G  
Sbjct: 89  LRSDLQRMKKP-PLIVGTVEEIL----DDGRVIVKSSTGPKFVSNVSPTVDRNELEPGAN 143

Query: 477 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           V +++    +   LP + D  V  M V+E PDV+Y+D+GG
Sbjct: 144 VALNQQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGG 183

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>PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 398

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 36/129 (27%), Positives = 63/129 (48%)
 Frame = +3

Query: 210 EIKELAKRINDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTDDAK 389
           +++EL +R+ D     ES+          L S+ + ++   PL V   + I+    +D +
Sbjct: 22  KLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSP-PLLVGVVSDIL----EDGR 76

Query: 390 YMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKP 569
            ++      KFVV     ++  +++ G RV +++    I   LP   DP V    VEEKP
Sbjct: 77  VVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKP 136

Query: 570 DVTYNDVGG 596
           +V+Y D+GG
Sbjct: 137 EVSYEDIGG 145

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>PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog|
          Length = 413

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 20/40 (50%), Positives = 30/40 (75%)
 Frame = +3

Query: 477 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           VG+DR+   +   LPP+ D S+++++  EKPDVTYND+GG
Sbjct: 125 VGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGG 164

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>PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S10B (Proteasome|
           regulatory particle ATPase-like protein 4)
          Length = 406

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 21/72 (29%), Positives = 42/72 (58%)
 Frame = +3

Query: 381 DAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE 560
           + K+++      ++VVG    ++  ++++G RV +D     I   LP ++DP V  M+ E
Sbjct: 83  EEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHE 142

Query: 561 EKPDVTYNDVGG 596
           +  +++Y+DVGG
Sbjct: 143 DPGNISYSDVGG 154

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>PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 397

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 26/73 (35%), Positives = 39/73 (53%)
 Frame = +3

Query: 378 DDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTV 557
           DD + ++      +FVV +   +    ++ G RV +D+    I   LP + DPSV    V
Sbjct: 70  DDERAIVQNYNGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEV 129

Query: 558 EEKPDVTYNDVGG 596
            E+P VTYND+GG
Sbjct: 130 IERPKVTYNDIGG 142

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>PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 396

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
 Frame = +3

Query: 297 LVSDKQMMQEEQPLQVARCTKIINPNT---------DDAKYMINVKQIAKFVVGLGDKVS 449
           L +DK+ ++ E     +  +++  P           DD + ++      +FVV +   + 
Sbjct: 33  LEADKERLERELSRLRSEMSRLRQPPAFAGSVIEVLDDDRAIVQNYNGPRFVVRIAPWID 92

Query: 450 PTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
            + +  G RV +D+    I   LP   DP+V    V E+P+VTYND+GG
Sbjct: 93  KSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGG 141

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>PRS6A_BRACM (O23894) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1)
          Length = 424

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 25/179 (13%)
 Frame = +3

Query: 135 DEDDIALLKTYGLGPYSTSIKTAEKEIKELAKRINDLCG-----IKESDTGLAPPSQWDL 299
           +ED +A + T  +   +  ++   + +KE A+R N  C      IKE+            
Sbjct: 13  EEDQLASMSTEDIVRATRLLENEIRILKEDAQRTNLECDSYKEKIKENQ----------- 61

Query: 300 VSDKQMMQEEQPLQVARCTKIINPNTDD------AKYMINVKQIAKFVV----------- 428
             +K  + ++ P  V    +I+  N +D      A   ++ ++  K VV           
Sbjct: 62  --EKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFL 119

Query: 429 ---GLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
              GL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG
Sbjct: 120 PVVGL---VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGG 175

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>PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 407

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 9/148 (6%)
 Frame = +3

Query: 180 YSTSIKTAEKEIKELAKRINDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTK 359
           YST I+  + ++KE  ++        ES          D+  +   +++E  +      K
Sbjct: 7   YSTDIEKNKMDLKEFKEKTQ--IAELESKVLRLELKNKDINRENVQIKKENEILKRELDK 64

Query: 360 IINP---------NTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 512
           +  P           ++ K ++       F+V L   V P DI  G RV +++    I  
Sbjct: 65  LRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVE 124

Query: 513 PLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
            LP + D     M +EEKPD+++ D+GG
Sbjct: 125 VLPKEKDYRAMAMEIEEKPDISFEDIGG 152

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>PRS10_SCHPO (O74445) Probable 26S protease subunit rpt4|
          Length = 388

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 21/73 (28%), Positives = 41/73 (56%)
 Frame = +3

Query: 378 DDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTV 557
           D  ++++      ++VVG  + V  + + +G+RV +D     I   LP ++DP V  M++
Sbjct: 64  DSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSI 123

Query: 558 EEKPDVTYNDVGG 596
           E+  D+++  VGG
Sbjct: 124 EDPGDISFAGVGG 136

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>PRS6A_ARATH (O04019) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1)
          Length = 419

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
 Frame = +3

Query: 141 DDIALLKTYGLGPYSTSIKTAEKEIKELAKRIN-DLCGIKESDTGLAPPSQWDLVSDKQM 317
           D +A + T  +G  S  +    + +KE ++R N DL  +KE        +Q  +  +KQ+
Sbjct: 10  DQLASMTTDDIGRASRLLANEIRILKEESQRTNLDLESVKEK----IKENQEKIKLNKQL 65

Query: 318 MQEEQPLQVARCTKIINPNTDD------AKYMINVKQIAKFVV--------------GLG 437
                P  V    +I+  + +D      A   ++ ++  K VV              GL 
Sbjct: 66  -----PYLVGNIVEILEMSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGL- 119

Query: 438 DKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
             V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG
Sbjct: 120 --VDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGG 170

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>PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
 Frame = +3

Query: 297 LVSDKQMMQEEQPLQVARCTKIINPNT---------DDAKYMINVKQIAKFVVGLGDKVS 449
           L +DK+ ++ E     +  +++  P           DD + ++      +FVV +   + 
Sbjct: 36  LEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIE 95

Query: 450 PTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
              +  G RV +D+    I   LP   DP+V    V E+P+VTYND+GG
Sbjct: 96  RDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYNDIGG 144

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>PRS6A_ORYSA (P46465) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1)
          Length = 429

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 25/58 (43%), Positives = 34/58 (58%)
 Frame = +3

Query: 423 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           V+GL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG
Sbjct: 126 VIGL---VDPEKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGG 180

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>PRS6A_YEAST (P33297) 26S protease regulatory subunit 6A (TAT-binding protein|
           homolog 1) (TBP-1)
          Length = 434

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 24/53 (45%), Positives = 32/53 (60%)
 Frame = +3

Query: 438 DKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           DK+ P D+     VGV+++ Y I   LP + D  V  M V+EKP  TY+DVGG
Sbjct: 138 DKLKPNDL-----VGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGG 185

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>PRS6A_LYCES (P54776) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1) (Mg(2+)-dependent ATPase 1)
           (LEMA-1)
          Length = 423

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 25/58 (43%), Positives = 35/58 (60%)
 Frame = +3

Query: 423 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           VVGL   V P +++ G  VGV+++ Y I   LP + D  V  M V+EKP   Y+D+GG
Sbjct: 120 VVGL---VDPDNLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYHDIGG 174

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>PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease subunit SUG2)|
           (Proteasomal cap subunit)
          Length = 437

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 21/72 (29%), Positives = 42/72 (58%)
 Frame = +3

Query: 381 DAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE 560
           + KY++      +++VG+ + V  + +++G+RV +D     I   LP + DP V  MT  
Sbjct: 114 EEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSF 173

Query: 561 EKPDVTYNDVGG 596
           E+ ++T++ +GG
Sbjct: 174 EQGEITFDGIGG 185

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>PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
 Frame = +3

Query: 297 LVSDKQMMQEEQPLQVARCTKIINPNT---------DDAKYMINVKQIAKFVVGLGDKVS 449
           L +DK+ ++ E     +  +++  P           D+ + ++      +FVV +   + 
Sbjct: 36  LEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNYNGPRFVVRIAPWID 95

Query: 450 PTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
              +  G RV +D+    +   LP   DP+V    V E+P+VTYND+GG
Sbjct: 96  RKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGG 144

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>PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog|
          Length = 423

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 26/88 (29%), Positives = 44/88 (50%)
 Frame = +3

Query: 333 PLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 512
           PL + +  + I+ NT     ++     + +VV +   +    ++    V + R+   +  
Sbjct: 87  PLVIGQFMEAIDQNTG----IVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVD 142

Query: 513 PLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
            LPP+ D S+ M+   EKPDVTY DVGG
Sbjct: 143 ILPPEADSSIAMLGENEKPDVTYADVGG 170

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>PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6) (Conserved ATPase
           domain protein 44) (CADp44)
          Length = 389

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 20/72 (27%), Positives = 41/72 (56%)
 Frame = +3

Query: 381 DAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE 560
           + K+++      ++VVG   ++  + ++ G RV +D     I   LP ++DP V  M+ E
Sbjct: 66  EEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHE 125

Query: 561 EKPDVTYNDVGG 596
           +  +V+Y+++GG
Sbjct: 126 DPGNVSYSEIGG 137

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>PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 20/72 (27%), Positives = 41/72 (56%)
 Frame = +3

Query: 381 DAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE 560
           + K+++      ++VVG   ++  + ++ G RV +D     I   LP ++DP V  M+ E
Sbjct: 66  EEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHE 125

Query: 561 EKPDVTYNDVGG 596
           +  +V+Y+++GG
Sbjct: 126 DPGNVSYSEIGG 137

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>PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 20/72 (27%), Positives = 41/72 (56%)
 Frame = +3

Query: 381 DAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE 560
           + K+++      ++VVG   ++  + ++ G RV +D     I   LP ++DP V  M+ E
Sbjct: 66  EEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHE 125

Query: 561 EKPDVTYNDVGG 596
           +  +V+Y+++GG
Sbjct: 126 DPGNVSYSEIGG 137

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>PRS6B_YEAST (P33298) 26S protease regulatory subunit 6B homolog (YNT1 protein)|
           (TAT-binding homolog 2)
          Length = 428

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 26/88 (29%), Positives = 44/88 (50%)
 Frame = +3

Query: 333 PLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 512
           PL + +  + I+ NT        +  + + +  L  ++    ++  M V + R+   +  
Sbjct: 93  PLVIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDREL----LKPSMSVALHRHSNALVD 148

Query: 513 PLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
            LPP  D S+++M   EKPDVTY DVGG
Sbjct: 149 ILPPDSDSSISVMGENEKPDVTYADVGG 176

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>PRS6A_SCHPO (O14126) 26S protease regulatory subunit 6A|
          Length = 438

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +3

Query: 444 VSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           V P ++  G  +GV+++ Y I   LP + D  V  M V+EKP   Y+D+GG
Sbjct: 139 VEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGG 189

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>PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 409

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
 Frame = +3

Query: 297 LVSDKQMMQEEQPLQVARCTKIINPN---------TDDAKYMINVKQIAKFVVGLGDKVS 449
           L  +K  +Q+E        TK+++P           DD + ++        +V +   V 
Sbjct: 35  LTKEKISLQKELEYYKNEITKLLSPPYIEAVVLEVIDDNRVVVKSSTGPNLIVNVAAGVD 94

Query: 450 PTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
              ++ G  V ++     I   LP + DP V  M VEE+P V + DVGG
Sbjct: 95  ARSLKPGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEERPKVFFKDVGG 143

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>PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 393

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 21/72 (29%), Positives = 37/72 (51%)
 Frame = +3

Query: 381 DAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE 560
           D + ++        VV +   +    I+ G+ V +++    I   LP K DP V  M + 
Sbjct: 67  DGRVLVRSSSGPNLVVNIASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVKTMEII 126

Query: 561 EKPDVTYNDVGG 596
           E+P+VTY+++GG
Sbjct: 127 ERPNVTYSEIGG 138

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>PRS6B_ARATH (Q9SEI4) 26S protease regulatory subunit 6B homolog (26S proteasome|
           AAA-ATPase subunit RPT3) (Regulatory particle triple-A
           ATPase subunit 3)
          Length = 408

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 17/40 (42%), Positives = 28/40 (70%)
 Frame = +3

Query: 477 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           V + R+   +   LPP+ D S+++++  EKPDV+YND+GG
Sbjct: 120 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGG 159

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>PRS6B_ENCCU (Q8SQI9) 26S protease regulatory subunit 6B homolog|
          Length = 387

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 22/61 (36%), Positives = 33/61 (54%)
 Frame = +3

Query: 414 AKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVG 593
           + FVV +   V    ++    V + R+   I   LPP++D ++ +M   EKP VTY DVG
Sbjct: 78  SNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVG 137

Query: 594 G 596
           G
Sbjct: 138 G 138

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>PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog|
          Length = 389

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 24/88 (27%), Positives = 46/88 (52%)
 Frame = +3

Query: 333 PLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 512
           PL + +  + I+ NT     ++     + +VV +   +    ++    V + R+   +  
Sbjct: 55  PLVIGQFLEAIDQNTA----IVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVD 110

Query: 513 PLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
            LPP+ D S++M+  +E+PDV+Y DVGG
Sbjct: 111 ILPPEADSSISMLRPDERPDVSYADVGG 138

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>PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 430

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +3

Query: 381 DAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE 560
           + K ++       F+V +   V+P D+  G RV +++    +   LP   D     M V+
Sbjct: 103 ERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKDYRAKAMEVD 162

Query: 561 EKPDVTYNDVGG 596
           E+P+V Y D+GG
Sbjct: 163 ERPNVRYEDIGG 174

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>PR6AA_XENLA (O42587) 26S protease regulatory subunit 6A-A (TAT-binding protein|
           6) (TBP-6)
          Length = 405

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = +3

Query: 423 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           V+GL D  K+ P D+     VGV+++ Y I   LP + D  V  M V+E+P   Y+D+GG
Sbjct: 120 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGG 174

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>PR6AB_XENLA (O42586) 26S protease regulatory subunit 6A-B (TAT-binding protein|
           10) (TBP-10)
          Length = 404

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = +3

Query: 423 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           V+GL D  K+ P D+     VGV+++ Y I   LP + D  V  M V+E+P   Y+D+GG
Sbjct: 101 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGG 155

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>PRS6A_RAT (Q63569) 26S protease regulatory subunit 6A (TAT-binding protein 1)|
           (TBP-1) (Spermatogenic cell/sperm-associated TAT-binding
           protein homolog SATA)
          Length = 439

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = +3

Query: 423 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           V+GL D  K+ P D+     VGV+++ Y I   LP + D  V  M V+E+P   Y+D+GG
Sbjct: 136 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGG 190

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>PRS6A_HUMAN (P17980) 26S protease regulatory subunit 6A (TAT-binding protein 1)|
           (TBP-1) (Proteasome subunit P50)
          Length = 439

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = +3

Query: 423 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           V+GL D  K+ P D+     VGV+++ Y I   LP + D  V  M V+E+P   Y+D+GG
Sbjct: 136 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGG 190

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>PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase MS73)|
          Length = 415

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 21/88 (23%), Positives = 45/88 (51%)
 Frame = +3

Query: 333 PLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 512
           PL + +  + ++ NT     ++     + + V +   +    ++    V + ++   +  
Sbjct: 83  PLVIGQFLEAVDQNTG----IVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVD 138

Query: 513 PLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
            LPP+ D S++M+  +EKPDV Y+D+GG
Sbjct: 139 VLPPEADSSISMLQADEKPDVQYSDIGG 166

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>PRS6A_MOUSE (O88685) 26S protease regulatory subunit 6A (TAT-binding protein 1)|
           (TBP-1)
          Length = 442

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +3

Query: 423 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           V+GL D  K+ P D+     VGV+++ Y I   LP   D  V  M V+E+P   Y+D+GG
Sbjct: 139 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTDYDSRVKAMEVDERPTEQYSDIGG 193

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>PRS6B_CAEEL (P46502) Probable 26S protease regulatory subunit 6B|
          Length = 414

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +3

Query: 459 IEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           ++ G  V + +    +   LPP+ D S+ M+  +EKPD++Y D+GG
Sbjct: 120 LKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGG 165

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>PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-binding protein 7)|
           (TBP-7)
          Length = 418

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = +3

Query: 516 LPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           LPP+ D S+ M+T ++KPDV Y D+GG
Sbjct: 143 LPPEADSSIMMLTSDQKPDVMYADIGG 169

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>PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)|
           (MB67-interacting protein) (TAT-binding protein 7)
           (TBP-7)
          Length = 418

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = +3

Query: 516 LPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           LPP+ D S+ M+T ++KPDV Y D+GG
Sbjct: 143 LPPEADSSIMMLTSDQKPDVMYADIGG 169

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>PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)|
           (MB67-interacting protein) (TAT-binding protein 7)
           (TBP-7) (CIP21)
          Length = 418

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 516 LPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           LPP  D S+ M+T ++KPDV Y D+GG
Sbjct: 143 LPPAADSSIMMLTSDQKPDVMYADIGG 169

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>PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)|
          Length = 439

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 24/88 (27%), Positives = 41/88 (46%)
 Frame = +3

Query: 333 PLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 512
           P+ V    +II    DD   +++    ++  V +   V    +E G  V ++   + +  
Sbjct: 105 PMSVGNLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVG 160

Query: 513 PLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
            L    DP VT+M +E+ P  TY D+GG
Sbjct: 161 VLSDDTDPMVTVMKLEKAPQETYADIGG 188

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>PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4|
          Length = 443

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 24/88 (27%), Positives = 41/88 (46%)
 Frame = +3

Query: 333 PLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 512
           P+ V    +II    DD   +++    ++  V +   V    +E G  V ++   + +  
Sbjct: 109 PMAVGSLEEII----DDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIG 164

Query: 513 PLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
            L    DP V++M +E+ P  TY DVGG
Sbjct: 165 VLSDDTDPMVSVMKLEKAPQETYADVGG 192

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>PRS6B_DICDI (P34123) 26S protease regulatory subunit 6B homolog (TAT-binding|
           protein homolog 2)
          Length = 403

 Score = 36.2 bits (82), Expect = 0.073
 Identities = 19/88 (21%), Positives = 43/88 (48%)
 Frame = +3

Query: 333 PLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 512
           PL + +  ++++ NT     ++     +   V +   +    ++    V + R+   +  
Sbjct: 71  PLLIGQLLEMVDSNTG----IVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVD 126

Query: 513 PLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
            LPP+ D S+ ++  +EKP  +Y+D+GG
Sbjct: 127 TLPPESDSSIHLLGADEKPSESYSDIGG 154

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>PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 35.8 bits (81), Expect = 0.096
 Identities = 25/88 (28%), Positives = 41/88 (46%)
 Frame = +3

Query: 333 PLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 512
           P+ V    +II    DD   +++    ++  V +   V    +E G  V ++   + +  
Sbjct: 106 PMSVGTLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIG 161

Query: 513 PLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
            L    DP VT+M VE+ P  TY D+GG
Sbjct: 162 VLMDDTDPLVTVMKVEKAPQETYADIGG 189

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>PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 35.8 bits (81), Expect = 0.096
 Identities = 25/88 (28%), Positives = 41/88 (46%)
 Frame = +3

Query: 333 PLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 512
           P+ V    +II    DD   +++    ++  V +   V    +E G  V ++   + +  
Sbjct: 106 PMSVGTLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIG 161

Query: 513 PLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
            L    DP VT+M VE+ P  TY D+GG
Sbjct: 162 VLMDDTDPLVTVMKVEKAPQETYADIGG 189

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>PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 35.8 bits (81), Expect = 0.096
 Identities = 25/88 (28%), Positives = 41/88 (46%)
 Frame = +3

Query: 333 PLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 512
           P+ V    +II    DD   +++    ++  V +   V    +E G  V ++   + +  
Sbjct: 106 PMSVGTLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIG 161

Query: 513 PLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
            L    DP VT+M VE+ P  TY D+GG
Sbjct: 162 VLMDDTDPLVTVMKVEKAPQETYADIGG 189

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>TXND2_MOUSE (Q6P902) Thioredoxin domain-containing protein 2|
           (Spermatid-specific thioredoxin-1) (Sptrx-1)
           (Thioredoxin-4)
          Length = 515

 Score = 35.8 bits (81), Expect = 0.096
 Identities = 33/114 (28%), Positives = 48/114 (42%)
 Frame = +3

Query: 42  EPDTASARRREDAMAPEPEDDIMAEKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKE 221
           +P T S   RED +    ED I  +K  RP   +DI   K       S  I  ++KE  +
Sbjct: 130 KPATNSTHYREDDIPKSSEDIIQPKKGDRPKSSEDIIQSKKEDRPKSSEDIIQSKKE--D 187

Query: 222 LAKRINDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTDD 383
             K   D+   K+ D    P S  D++  K   +E++P        II P  +D
Sbjct: 188 RPKSSEDIIQSKKED---RPKSSEDIIQSK---KEDRP---KSSEDIIQPKKED 232

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>PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (TAT-binding|
           homolog 5)
          Length = 437

 Score = 35.8 bits (81), Expect = 0.096
 Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
 Frame = +3

Query: 228 KRINDLCGIKE---SDTGLAPPSQWDLVSDKQMMQEEQ--PLQVARCTKIINPNTDDAKY 392
           +RI D   ++E   S++ +  P +     +K+ ++E +  PL +    +II    DD   
Sbjct: 63  ERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEII----DDDHA 118

Query: 393 MINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPD 572
           ++    +  + V +   V    +E G  V +      I   L    DP V++M +++ P 
Sbjct: 119 IVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPT 178

Query: 573 VTYNDVGG 596
            +Y+D+GG
Sbjct: 179 ESYSDIGG 186

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>PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (TAT-binding|
           protein homolog 2)
          Length = 448

 Score = 35.8 bits (81), Expect = 0.096
 Identities = 22/88 (25%), Positives = 43/88 (48%)
 Frame = +3

Query: 333 PLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 512
           P+ V    +II    D++  +++     ++ VG+   V    +E G  + +      +  
Sbjct: 114 PMSVGSLEEII----DESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVG 169

Query: 513 PLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
            L  ++DP V++M VE+ P  +Y D+GG
Sbjct: 170 ILQDEVDPMVSVMKVEKAPLESYADIGG 197

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>PSMR_SULTO (Q975U2) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 392

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = +3

Query: 381 DAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE 560
           D K ++        +V +   +    ++ G  V + +    I   LP + D  V    V 
Sbjct: 67  DGKVIVRSSSGPNLIVNVSSNIDIKKLKPGSLVALTQRGSTIVEVLPEREDAYVKSFEVI 126

Query: 561 EKPDVTYNDVGG 596
           EKP+V Y+D+GG
Sbjct: 127 EKPNVHYSDIGG 138

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>PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 24/88 (27%), Positives = 41/88 (46%)
 Frame = +3

Query: 333 PLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 512
           P+ V    +II    DD   +++    ++  V +   V    +E G  V ++   + +  
Sbjct: 106 PMSVGTLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIG 161

Query: 513 PLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
            L    DP VT+M +E+ P  TY D+GG
Sbjct: 162 VLMDDTDPLVTVMKLEKAPQETYADIGG 189

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>PSMR1_HALSA (Q9HNP9) Proteasome-activating nucleotidase 1 (Proteasome|
           regulatory subunit 1)
          Length = 411

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 459 IEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           +E G RV ++ + + +Q  L  + D     M V+E P VTY D+GG
Sbjct: 112 LEVGDRVAIN-DSFSVQRVLDDETDARAQAMEVDESPSVTYADIGG 156

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>OPS5_DROME (P91657) Opsin Rh5|
          Length = 382

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = -2

Query: 583 LYVTSGFSSTVIIVTLGSIFGGNGI*IWYLFRSTPTLIPSSISVGETLSPNPTTNFAI-- 410
           +Y  +GF    I++ L SIFG NG+ IW    S     PS++ +          N AI  
Sbjct: 49  IYYHAGFYIAFIVLMLSSIFG-NGLVIWIFSTSKSLRTPSNLLI---------LNLAIFD 98

Query: 409 ---CFTLIMYLASSVLGFII 359
              C  +  YL ++ +G+I+
Sbjct: 99  LFMCTNMPHYLINATVGYIV 118

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>PSMR2_HALSA (Q9HRW6) Proteasome-activating nucleotidase 2 (Proteasome|
           regulatory subunit 2)
          Length = 407

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 459 IEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           +E G RV V+ N   +   L  + D    +M V++ PDV Y D+GG
Sbjct: 109 LEPGSRVAVN-NSLSVVRQLDDEADVRARVMEVDDSPDVGYEDIGG 153

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>PRDM9_HUMAN (Q9NQV7) PR domain zinc finger protein 9 (PR domain-containing|
           protein 9)
          Length = 689

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
 Frame = +3

Query: 105 IMAEKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKELAKRINDLCGIKESDTGLAPP 284
           ++  +NP P D++     +     P+S + KT  +EIKE +K +N     +E     + P
Sbjct: 219 LLQPENPCPGDQNQ----EQQYPDPHSRNDKTKGQEIKERSKLLNKRTWQREISRAFSSP 274

Query: 285 SQWDLVS---DKQMMQEEQPLQVARCTKIINP-NTDDAKYMINVKQIAKFVVG 431
            +  + S    K++M+EE     +R  + +NP NT      + + +IAK   G
Sbjct: 275 PKGQMGSCRVGKRIMEEE-----SRTGQKVNPGNTGKLFVGVGISRIAKVKYG 322

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>SRA6_CAEEL (Q09208) Serpentine receptor class alpha-6 (Protein sra-6)|
          Length = 329

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 29/127 (22%), Positives = 53/127 (41%)
 Frame = -2

Query: 565 FSSTVIIVTLGSIFGGNGI*IWYLFRSTPTLIPSSISVGETLSPNPTTNFAICFTLIMYL 386
           +   ++I T G IFG  G+ I   F +  T   +  SV             +C +LI+ +
Sbjct: 104 YFKVLMIGTSGMIFGQTGLLIERAFATFATTYKTKKSV----------YIGVCISLIVLV 153

Query: 385 ASSVLGFIILVHLATXXXXXXXXXXXSDTRSHWLGGASPVSDSFIPQRSLILLANSLISF 206
            S+  GFIIL                 D    W  G   VS S +P+ +L  + +++++ 
Sbjct: 154 CSTSSGFIIL---------------WDDPLEGWTIGCFAVSKSVVPRFNLFSILSTVLTL 198

Query: 205 SAVLMLV 185
             +++ +
Sbjct: 199 FNLIVSI 205

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>PRP16_HUMAN (Q92620) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16|
            (EC 3.6.1.-) (ATP-dependent RNA helicase DHX38) (DEAH box
            protein 38)
          Length = 1227

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +3

Query: 171  LGPYSTSIKTAEKEIKELAKRINDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVAR 350
            LGP   S+K A K  +E  +R  +     E +  LA   +  L + +Q  ++  PL   R
Sbjct: 1144 LGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALA---EEQLRARRQEQEKRSPLGSVR 1200

Query: 351  CTKIINP 371
             TKI  P
Sbjct: 1201 STKIYTP 1207

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>IF3_SERMA (P33320) Translation initiation factor IF-3|
          Length = 183

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/89 (23%), Positives = 39/89 (43%)
 Frame = +3

Query: 303 SDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVG 482
           S K+  +E++ +QV        P TDD  Y + ++ + +F+   GDK   T    G  + 
Sbjct: 80  STKEQKEEQKVIQVKEIK--FRPGTDDGDYQVKLRNLIRFLED-GDKAKITLRFRGPEMA 136

Query: 483 VDRNKYQIQIPLPPKIDPSVTMMTVEEKP 569
             +   ++  PL   +   + +  VE  P
Sbjct: 137 HQQIGMEVLNPLRKDLCEDMDLAVVESFP 165

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>FMNL_MOUSE (Q9JL26) Formin-like 1 protein (Formin-related protein)|
          Length = 1094

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
 Frame = +3

Query: 180  YSTSIKTAEKEIKELAKRIN-DLCGIKESDTGLAPPS----QWDLVSDKQMMQEEQPL 338
            ++ + K AE+E+++  K    D  G +E  T  +PP     Q DL+S+ +  Q+++PL
Sbjct: 988  FTKAYKKAEQEVEQWKKEAAADTSGREEPPTPKSPPKARRQQMDLISELKRKQQKEPL 1045

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>KCNH7_MOUSE (Q9ER47) Potassium voltage-gated channel subfamily H member 7|
            (Voltage-gated potassium channel subunit Kv11.3)
            (Ether-a-go-go-related gene potassium channel 3)
            (Ether-a-go-go-related protein 3) (Eag-related protein 3)
          Length = 1195

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 3    RHEAAVSPLAHAAEPDTASARRREDAMAPEPEDDIMAEKNPRPLDE 140
            RHE+A S   + +E DT   RRR  +   E E D   E +    D+
Sbjct: 866  RHESAKSQSVNDSEGDTGKLRRRRLSFESEGEKDFSKENSANDADD 911

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>PRP28_ASPOR (Q2UH00) Pre-mRNA splicing ATP-dependent RNA helicase prp28 (EC|
           3.6.1.-)
          Length = 803

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
 Frame = +3

Query: 21  SPLAHAAEPDTASARRREDAMAPEPEDDIM-----AEKNPRPLDEDD----IALLKTYGL 173
           +P A AA  ++ S  +  D   P P   +      ++ + RP+D+D+    +AL+K   +
Sbjct: 166 TPTAPAAMRNSHSHNKNRDLSPPPPPKSMSFGLASSKGDKRPVDDDEVAAQVALVKQRYM 225

Query: 174 GPYSTSIKTAEKEIKELAKRINDLCGIKESDT 269
           G   TS  +A+K+ K    R  +     E DT
Sbjct: 226 GADQTSTFSAKKKRKRTTDRKFNFEWNAEEDT 257

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>Y830_STAAC (Q5HHQ3) UPF0042 protein SACOL0830|
          Length = 303

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +3

Query: 297 LVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMR 476
           L+S  +  +   PL       +IN   D+ +++  ++ IA FV+    K+SP +++E +R
Sbjct: 106 LISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDT-TKLSPKELKERIR 164

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>Y820_STAAR (Q6GIM6) UPF0042 protein SAR0820|
          Length = 303

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +3

Query: 297 LVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMR 476
           L+S  +  +   PL       +IN   D+ +++  ++ IA FV+    K+SP +++E +R
Sbjct: 106 LISRYKETRRAHPLMEQGKKSLINAINDEREHLSQIRSIANFVIDT-TKLSPKELKERIR 164

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>Y765_STAAM (P67108) UPF0042 protein SAV0765|
          Length = 303

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +3

Query: 297 LVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMR 476
           L+S  +  +   PL       +IN   D+ +++  ++ IA FV+    K+SP +++E +R
Sbjct: 106 LISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDT-TKLSPKELKERIR 164

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>Y730_STAAS (Q6GB65) UPF0042 protein SAS0730|
          Length = 303

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +3

Query: 297 LVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMR 476
           L+S  +  +   PL       +IN   D+ +++  ++ IA FV+    K+SP +++E +R
Sbjct: 106 LISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDT-TKLSPKELKERIR 164

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>Y727_STAAW (P67110) UPF0042 protein MW0727|
          Length = 303

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +3

Query: 297 LVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMR 476
           L+S  +  +   PL       +IN   D+ +++  ++ IA FV+    K+SP +++E +R
Sbjct: 106 LISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDT-TKLSPKELKERIR 164

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>Y720_STAAN (P67109) UPF0042 protein SA0720|
          Length = 303

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +3

Query: 297 LVSDKQMMQEEQPLQVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMR 476
           L+S  +  +   PL       +IN   D+ +++  ++ IA FV+    K+SP +++E +R
Sbjct: 106 LISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDT-TKLSPKELKERIR 164

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>YLE5_CAEEL (P46941) Hypothetical protein C38D4.5 in chromosome III|
          Length = 837

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 24  PLAHAAEPDTASARRREDAM---APEPEDDIMAEKNPRPLDEDDIALLKTY 167
           PL+HA  P + S RRR+D M   A E     ++   PRP  E  I  L+ +
Sbjct: 536 PLSHALIPISRSMRRRDDPMSQSAIETVSTSVSTDEPRPSKETIIEKLRRF 586

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>HMCN1_HUMAN (Q96RW7) Hemicentin-1 precursor (Fibulin-6) (FIBL-6)|
          Length = 5635

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 480  GVDRNKYQIQIPLPPKIDPSVTMMTV 557
            G DR +  +Q+ +PP I P  T MTV
Sbjct: 3790 GTDRRRIDLQVHVPPSIAPGPTNMTV 3815

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>GATB_AQUAE (O66766) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 478

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 18/133 (13%)
 Frame = +3

Query: 153 LLKTYGLGPYSTSIKTAEKEIKELAKR---------------INDLCGIKESDTGLAPPS 287
           L+K YGL  Y   I    KE+ +  +                INDL G            
Sbjct: 306 LIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFKEPKGIVNWLINDLLG------------ 353

Query: 288 QWDLVSDKQMMQEEQPLQ---VARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTD 458
              L+ DK +  EE P++   +A   K+I       K     K++ K +V  G   S   
Sbjct: 354 ---LLRDKGISIEESPVKPEHLAELVKLIKEKVISTKI---GKEVIKEMVETGKTPSQIV 407

Query: 459 IEEGMRVGVDRNK 497
            E+G++   D N+
Sbjct: 408 EEKGLKQITDENQ 420

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>HRP_PLABE (Q08168) 58 kDa phosphoprotein (Heat shock-related protein) (HRP)|
          Length = 423

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 25/171 (14%)
 Frame = +3

Query: 72  EDAMAPEPEDDIMAEKNPRPLDEDDIALLKTYGLG--PYSTSIKTAEKEIKELAKRINDL 245
           E+    E ED+   E+     D + + L+K   +   P +  I   E E+ E  ++I ++
Sbjct: 59  EEKSDEEEEDEEEEEEEEEDDDPEKLELIKEEAVECPPLAPII---EGELSE--EQIEEI 113

Query: 246 CGIKESDTGLAPPSQWDLVSDKQ--------------------MMQEEQPLQVAR-CTKI 362
           C +KE    L    +++   +K                     ++  ++P    R CT+ 
Sbjct: 114 CKLKEEAVDLVENKKYEEALEKYNKIISFGNPSAMIYTKRASILLNLKRPKACIRDCTEA 173

Query: 363 INPNTDDAK-YMINVKQIAKFVVGLGD-KVSPTDIEEGMRVGVDRNKYQIQ 509
           +N N D A  Y I  K        LG  + +  D+E+G ++  D N + +Q
Sbjct: 174 LNLNVDSANAYKIRAKAYRY----LGKWEFAHADMEQGQKIDYDENLWDMQ 220

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>RPA1_MOUSE (O35134) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)|
            (RNA polymerase I 194 kDa subunit) (RPA194)
          Length = 1717

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 369  PNTDDAKYMINVKQIAKFV--VGLGDKVSPTDIEEGMRVGVDRNKYQI 506
            P  D  K +  VK + K +  V LG+ +   DI+E   +G  RNK+Q+
Sbjct: 1274 PVFDTKKALKKVKSLKKRLTRVCLGEVLQKVDIQESFCMGEKRNKFQV 1321

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>RBL_MEDSA (P04991) Ribulose bisphosphate carboxylase large chain precursor|
           (EC 4.1.1.39) (RuBisCO large subunit)
          Length = 474

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
 Frame = -3

Query: 567 VSPQPSS**RWGQSSVATESESGTCSD--QHRLSSLPQYQLGKLYH--PIQQQTLQFVLH 400
           VSPQP        ++VA ES +GT +      L+SL +Y+ G+ YH  P+  +  QF+ +
Sbjct: 42  VSPQPGVPAEEAGAAVAAESSTGTWTTVWTDGLTSLDRYK-GRCYHIEPVAGEETQFIAY 100

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>TIG_BUCAP (Q8K991) Trigger factor (TF)|
          Length = 442

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -1

Query: 578 RDIWFLLNRH---HSDAGVNLRWQRNLNLVLVPINTDSHPFLNISWGNFITQSNNKLCNL 408
           +DIW  +NR    +    +N     N N  L   N +   F+ +S  NFI + NNKL N 
Sbjct: 150 KDIWNKVNRAIKTNDLVTINYCIYEN-NKKLDKFNVEKFKFI-VSQNNFIPELNNKLINH 207

Query: 407 FYIDHVF 387
           F  D +F
Sbjct: 208 FTNDVIF 214

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>AVIL_MOUSE (O88398) Advillin (p92) (Actin-binding protein DOC6)|
          Length = 819

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
 Frame = +3

Query: 132 LDEDDIALLKTYGLGPYSTSIKTAEKEIKELAKRINDLCGIKESDT---GLAPPSQWDLV 302
           L  +D+ LL+T     Y    K +  + + +AK + DL     +DT   G  PP  WDL+
Sbjct: 537 LISNDVFLLRTQA-EHYLWYGKGSSGDERAMAKELVDLLCDGNADTVAEGQEPPEFWDLL 595

Query: 303 -------SDKQMMQEEQPLQV 344
                  +DK++ QE   +QV
Sbjct: 596 GGKTAYANDKRLQQETLDVQV 616

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>VAT_THEAC (O05209) VCP-like ATPase|
          Length = 745

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +3

Query: 438 DKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 596
           DK  PT+I E M V  D  K  ++      I+PS     + E P+V ++D+GG
Sbjct: 424 DKPIPTEILEKMVVTEDDFKNALK-----SIEPSSLREVMVEVPNVHWDDIGG 471

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>ATI_CAMPS (Q775Q2) A-type inclusion protein (ATI)|
          Length = 726

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
 Frame = +3

Query: 339 QVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPL 518
           +VA   K  +    D KY+++ ++++ +   L   ++ T IEE    G D+    I++  
Sbjct: 307 EVASLRKEYSEAEPDYKYLMD-EEVSAYDKHLPKPITNTGIEEPHATGGDKEDQPIKVVY 365

Query: 519 PPK------IDPSVTMMTVEEKPDVTYNDVG 593
           PP       I P   +      P +T  D+G
Sbjct: 366 PPNNDKDDAIKPHNPLEDPNYVPTITRTDIG 396

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>ATI_CAMPM (Q8V2M9) A-type inclusion protein (ATI)|
          Length = 726

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
 Frame = +3

Query: 339 QVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPL 518
           +VA   K  +    D KY+++ ++++ +   L   ++ T IEE    G D+    I++  
Sbjct: 307 EVASLRKEYSEAEPDYKYLMD-EEVSAYDKHLPKPITNTGIEEPHATGGDKEDQPIKVVY 365

Query: 519 PPK------IDPSVTMMTVEEKPDVTYNDVG 593
           PP       I P   +      P +T  D+G
Sbjct: 366 PPNNDKDDAIKPHNPLEDPNYVPTITRTDIG 396

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>ATI_CAMPC (Q05482) A-type inclusion protein (ATI)|
          Length = 726

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
 Frame = +3

Query: 339 QVARCTKIINPNTDDAKYMINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPL 518
           +VA   K  +    D KY+++ ++++ +   L   ++ T IEE    G D+    I++  
Sbjct: 307 EVASLRKEYSEAEPDYKYLMD-EEVSAYDKHLPKPITNTGIEEPHATGGDKEDQPIKVVY 365

Query: 519 PPK------IDPSVTMMTVEEKPDVTYNDVG 593
           PP       I P   +      P +T  D+G
Sbjct: 366 PPNNDKDDAIKPHNPLEDPNYVPTITRTDIG 396


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,417,872
Number of Sequences: 219361
Number of extensions: 1415484
Number of successful extensions: 5160
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 4919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5145
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result