ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26o02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009620.1| Triticum aestivum clone wre1n.pk0126.e11:fis, full insert mRNA sequence Length = 862 Score = 642 bits (324), Expect = 0.0 Identities = 434/473 (91%), Gaps = 21/473 (4%) Strand = Plus / Plus Query: 1 caataatatagcccacgtgaattgtggtcggtgccggacaactttgatgtatccacatgg 60 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 264 caataatatagcccacgtgaactgtggtcggtgccggacaactttgatgtatccacatgg 323 Query: 61 agcaccttctgtcaaatgtgccatctgcgattttatcacga---------atactggaat 111 |||||||||||||||||||||||||||||||| |||||| | |||||||||| Sbjct: 324 agcaccttctgtcaaatgtgccatctgcgattatatcacaaatatcacaaatactggaat 383 Query: 112 aaacaccatgtcacctgcaccatgtccaaggcctacatcaaatgaatctgcatataatgc 171 ||| |||||| |||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 384 aaataccatgccacccgcgccatgt------cctacatcaaatgaatctgcatataatgc 437 Query: 172 ttcatcagcttctgttcccacatctcagccccagaatgtaaccgntgttgttgagaaccc 231 ||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||| Sbjct: 438 ctcatcagcttctgttcccacacctcaaccccagaatgtaaccgtcgttgttgagaaccc 497 Query: 232 tatgactgtcgacgaaaagggtaaactggtcagcaacgtcgtagtcggaattacacctgg 291 |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 498 tatgacagttgacgaaaagggtaaactggtcagcaacgtcgtagttggaattacacctgg 557 Query: 292 gaaaaattgaatgattgtttctcacctgatgtatacctgttttgtgttctatataaaaac 351 ||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 558 gaaaaattgaagggttgtttctcacctgatgtatacctgttttgtgttctatataagaac 617 Query: 352 ctggaaagaccatgtactggtatttccagcctttggtgattggttgctgcctgacctgga 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 ctggaaagaccatgtactggtatttccagcctttggtgattggttgctgcctgacctgga 677 Query: 412 agaacaaagacacataaagtg------ttttttggaatttcaccaaggaaagc 458 ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 678 agaacaaagacacataaagtgttttttttttttggaatttcaccaaggaaagc 730
>dbj|AK111569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071E13, full insert sequence Length = 1089 Score = 123 bits (62), Expect = 5e-25 Identities = 97/109 (88%) Strand = Plus / Plus Query: 187 tcccacatctcagccccagaatgtaaccgntgttgttgagaaccctatgactgtcgacga 246 ||||||||||| |||||||||||||||| |||||| ||||||||||||||||| || || Sbjct: 672 tcccacatctcgaccccagaatgtaaccgttgttgtcgagaaccctatgactgttgatga 731 Query: 247 aaagggtaaactggtcagcaacgtcgtagtcggaattacacctgggaaa 295 ||||||||||||||| ||||| || ||||| ||| ||||| |||||||| Sbjct: 732 aaagggtaaactggttagcaatgttgtagttggagttacaactgggaaa 780 Score = 115 bits (58), Expect = 1e-22 Identities = 142/170 (83%) Strand = Plus / Plus Query: 2 aataatatagcccacgtgaattgtggtcggtgccggacaactttgatgtatccacatgga 61 ||||||||||| || |||| ||||| | ||||||||| ||||||||||||||| |||| Sbjct: 457 aataatatagcacatgtgagctgtggccagtgccggacgactttgatgtatccatatggc 516 Query: 62 gcaccttctgtcaaatgtgccatctgcgattttatcacgaatactggaataaacaccatg 121 ||||||||||||||||||||||| ||| ||| |||||| || || ||||| || || || Sbjct: 517 gcaccttctgtcaaatgtgccatatgccattatatcacaaacaccggaatgaatactgtg 576 Query: 122 tcacctgcaccatgtccaaggcctacatcaaatgaatctgcatataatgc 171 |||| | |||| ||||| ||||||||||| || |||| |||||||||| Sbjct: 577 gcacccacgccatctccaatgcctacatcaagtggatcttcatataatgc 626
>gb|AY112561.1| Zea mays CL39582_1 mRNA sequence Length = 749 Score = 109 bits (55), Expect = 8e-21 Identities = 234/294 (79%) Strand = Plus / Minus Query: 2 aataatatagcccacgtgaattgtggtcggtgccggacaactttgatgtatccacatgga 61 ||||||||||| || ||||| || || | ||||||||||||||||||||||||| | || Sbjct: 609 aataatatagctcatgtgaactgcggccagtgccggacaactttgatgtatccatacggc 550 Query: 62 gcaccttctgtcaaatgtgccatctgcgattttatcacgaatactggaataaacaccatg 121 |||||||| || ||||||||| | ||| ||| | |||| ||||||| |||| || || Sbjct: 549 gcaccttcagtaaaatgtgccgtatgcaattatgtcacagctactggagtaaatactgtg 490 Query: 122 tcacctgcaccatgtccaaggcctacatcaaatgaatctgcatataatgcttcatcagct 181 |||| | |||| | | ||||| |||||| ||| ||| |||||| || ||||| || Sbjct: 489 gcacccaccccatctgcgaggccaacatcagatgggtcttcatatagtggctcatctact 430 Query: 182 tctgttcccacatctcagccccagaatgtaaccgntgttgttgagaaccctatgactgtc 241 |||| ||| | |||||| | ||||||||||| | ||||||||||||||||||||| || Sbjct: 429 tctgctcctaaatctcaatctcagaatgtaactgttgttgttgagaaccctatgacagtt 370 Query: 242 gacgaaaagggtaaactggtcagcaacgtcgtagtcggaattacacctgggaaa 295 || || ||||| ||||| ||||||| ||| ||||| ||| | ||| |||||||| Sbjct: 369 gatgacaagggaaaacttgtcagcagcgttgtagttggagtcacagctgggaaa 316
>gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic sequence, complete sequence Length = 175704 Score = 101 bits (51), Expect = 2e-18 Identities = 68/74 (91%) Strand = Plus / Plus Query: 188 cccacatctcagccccagaatgtaaccgntgttgttgagaaccctatgactgtcgacgaa 247 |||||||||| |||||||||||||||| |||||| ||||||||||||||||| || ||| Sbjct: 173362 cccacatctcgaccccagaatgtaaccgttgttgtcgagaaccctatgactgttgatgaa 173421 Query: 248 aagggtaaactggt 261 |||||||||||||| Sbjct: 173422 aagggtaaactggt 173435 Score = 99.6 bits (50), Expect = 8e-18 Identities = 86/98 (87%) Strand = Plus / Plus Query: 2 aataatatagcccacgtgaattgtggtcggtgccggacaactttgatgtatccacatgga 61 ||||||||||| || |||| ||||| | ||||||||| ||||||||||||||| |||| Sbjct: 172958 aataatatagcacatgtgagctgtggccagtgccggacgactttgatgtatccatatggc 173017 Query: 62 gcaccttctgtcaaatgtgccatctgcgattttatcac 99 ||||||||||||||||||||||| ||| ||| |||||| Sbjct: 173018 gcaccttctgtcaaatgtgccatatgccattatatcac 173055 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 131 ccatgtccaaggcctacatcaaatgaatctgcatataatgc 171 |||| ||||| ||||||||||| || |||| |||||||||| Sbjct: 173189 ccatctccaatgcctacatcaagtggatcttcatataatgc 173229
>gb|AC128646.5| Oryza sativa chromosome 3 BAC OSJNBb0029I19 genomic sequence, complete sequence Length = 120254 Score = 101 bits (51), Expect = 2e-18 Identities = 68/74 (91%) Strand = Plus / Plus Query: 188 cccacatctcagccccagaatgtaaccgntgttgttgagaaccctatgactgtcgacgaa 247 |||||||||| |||||||||||||||| |||||| ||||||||||||||||| || ||| Sbjct: 11459 cccacatctcgaccccagaatgtaaccgttgttgtcgagaaccctatgactgttgatgaa 11518 Query: 248 aagggtaaactggt 261 |||||||||||||| Sbjct: 11519 aagggtaaactggt 11532 Score = 99.6 bits (50), Expect = 8e-18 Identities = 86/98 (87%) Strand = Plus / Plus Query: 2 aataatatagcccacgtgaattgtggtcggtgccggacaactttgatgtatccacatgga 61 ||||||||||| || |||| ||||| | ||||||||| ||||||||||||||| |||| Sbjct: 11055 aataatatagcacatgtgagctgtggccagtgccggacgactttgatgtatccatatggc 11114 Query: 62 gcaccttctgtcaaatgtgccatctgcgattttatcac 99 ||||||||||||||||||||||| ||| ||| |||||| Sbjct: 11115 gcaccttctgtcaaatgtgccatatgccattatatcac 11152 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 131 ccatgtccaaggcctacatcaaatgaatctgcatataatgc 171 |||| ||||| ||||||||||| || |||| |||||||||| Sbjct: 11286 ccatctccaatgcctacatcaagtggatcttcatataatgc 11326
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 101 bits (51), Expect = 2e-18 Identities = 68/74 (91%) Strand = Plus / Minus Query: 188 cccacatctcagccccagaatgtaaccgntgttgttgagaaccctatgactgtcgacgaa 247 |||||||||| |||||||||||||||| |||||| ||||||||||||||||| || ||| Sbjct: 24462498 cccacatctcgaccccagaatgtaaccgttgttgtcgagaaccctatgactgttgatgaa 24462439 Query: 248 aagggtaaactggt 261 |||||||||||||| Sbjct: 24462438 aagggtaaactggt 24462425 Score = 99.6 bits (50), Expect = 8e-18 Identities = 86/98 (87%) Strand = Plus / Minus Query: 2 aataatatagcccacgtgaattgtggtcggtgccggacaactttgatgtatccacatgga 61 ||||||||||| || |||| ||||| | ||||||||| ||||||||||||||| |||| Sbjct: 24462902 aataatatagcacatgtgagctgtggccagtgccggacgactttgatgtatccatatggc 24462843 Query: 62 gcaccttctgtcaaatgtgccatctgcgattttatcac 99 ||||||||||||||||||||||| ||| ||| |||||| Sbjct: 24462842 gcaccttctgtcaaatgtgccatatgccattatatcac 24462805 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 131 ccatgtccaaggcctacatcaaatgaatctgcatataatgc 171 |||| ||||| ||||||||||| || |||| |||||||||| Sbjct: 24462671 ccatctccaatgcctacatcaagtggatcttcatataatgc 24462631
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 101 bits (51), Expect = 2e-18 Identities = 68/74 (91%) Strand = Plus / Minus Query: 188 cccacatctcagccccagaatgtaaccgntgttgttgagaaccctatgactgtcgacgaa 247 |||||||||| |||||||||||||||| |||||| ||||||||||||||||| || ||| Sbjct: 24379967 cccacatctcgaccccagaatgtaaccgttgttgtcgagaaccctatgactgttgatgaa 24379908 Query: 248 aagggtaaactggt 261 |||||||||||||| Sbjct: 24379907 aagggtaaactggt 24379894 Score = 99.6 bits (50), Expect = 8e-18 Identities = 86/98 (87%) Strand = Plus / Minus Query: 2 aataatatagcccacgtgaattgtggtcggtgccggacaactttgatgtatccacatgga 61 ||||||||||| || |||| ||||| | ||||||||| ||||||||||||||| |||| Sbjct: 24380371 aataatatagcacatgtgagctgtggccagtgccggacgactttgatgtatccatatggc 24380312 Query: 62 gcaccttctgtcaaatgtgccatctgcgattttatcac 99 ||||||||||||||||||||||| ||| ||| |||||| Sbjct: 24380311 gcaccttctgtcaaatgtgccatatgccattatatcac 24380274 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 131 ccatgtccaaggcctacatcaaatgaatctgcatataatgc 171 |||| ||||| ||||||||||| || |||| |||||||||| Sbjct: 24380140 ccatctccaatgcctacatcaagtggatcttcatataatgc 24380100
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 75.8 bits (38), Expect = 1e-10 Identities = 86/102 (84%) Strand = Plus / Minus Query: 7 tatagcccacgtgaattgtggtcggtgccggacaactttgatgtatccacatggagcacc 66 |||||| ||| |||| ||||| | ||||| |||| |||||||||||| | |||||||| Sbjct: 25849858 tatagctcacttgaactgtggccagtgccagacagtgttgatgtatccatacggagcacc 25849799 Query: 67 ttctgtcaaatgtgccatctgcgattttatcacgaatactgg 108 ||||||||| ||||| |||||| ||||||| || |||||||| Sbjct: 25849798 ttctgtcaagtgtgctatctgcaattttattacaaatactgg 25849757
>dbj|AK111837.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139G05, full insert sequence Length = 1182 Score = 75.8 bits (38), Expect = 1e-10 Identities = 86/102 (84%) Strand = Plus / Plus Query: 7 tatagcccacgtgaattgtggtcggtgccggacaactttgatgtatccacatggagcacc 66 |||||| ||| |||| ||||| | ||||| |||| |||||||||||| | |||||||| Sbjct: 452 tatagctcacttgaactgtggccagtgccagacagtgttgatgtatccatacggagcacc 511 Query: 67 ttctgtcaaatgtgccatctgcgattttatcacgaatactgg 108 ||||||||| ||||| |||||| ||||||| || |||||||| Sbjct: 512 ttctgtcaagtgtgctatctgcaattttattacaaatactgg 553
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 75.8 bits (38), Expect = 1e-10 Identities = 86/102 (84%) Strand = Plus / Minus Query: 7 tatagcccacgtgaattgtggtcggtgccggacaactttgatgtatccacatggagcacc 66 |||||| ||| |||| ||||| | ||||| |||| |||||||||||| | |||||||| Sbjct: 25778034 tatagctcacttgaactgtggccagtgccagacagtgttgatgtatccatacggagcacc 25777975 Query: 67 ttctgtcaaatgtgccatctgcgattttatcacgaatactgg 108 ||||||||| ||||| |||||| ||||||| || |||||||| Sbjct: 25777974 ttctgtcaagtgtgctatctgcaattttattacaaatactgg 25777933
>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137492 Score = 75.8 bits (38), Expect = 1e-10 Identities = 86/102 (84%) Strand = Plus / Minus Query: 7 tatagcccacgtgaattgtggtcggtgccggacaactttgatgtatccacatggagcacc 66 |||||| ||| |||| ||||| | ||||| |||| |||||||||||| | |||||||| Sbjct: 71309 tatagctcacttgaactgtggccagtgccagacagtgttgatgtatccatacggagcacc 71250 Query: 67 ttctgtcaaatgtgccatctgcgattttatcacgaatactgg 108 ||||||||| ||||| |||||| ||||||| || |||||||| Sbjct: 71249 ttctgtcaagtgtgctatctgcaattttattacaaatactgg 71208
>gb|AF475127.1| Triticum aestivum 18S subunit ribosomal protein mRNA, partial cds Length = 465 Score = 63.9 bits (32), Expect = 4e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 47 atgtatccacatggagcaccttctgtcaaatgtgccatctgcgattttatcacgaatact 106 ||||||||| |||||||| |||| ||||||||||| |||||| ||||||| || || | | Sbjct: 208 atgtatccatatggagcatcttcggtcaaatgtgctatctgcaattttattacaaacatt 267 Query: 107 ggaataaacacc 118 ||||| |||||| Sbjct: 268 ggaatgaacacc 279 Score = 44.1 bits (22), Expect = 0.40 Identities = 63/77 (81%) Strand = Plus / Plus Query: 203 cagaatgtaaccgntgttgttgagaaccctatgactgtcgacgaaaagggtaaactggtc 262 ||||||||||| | || || || ||||| ||||| || || || ||||| ||| |||| Sbjct: 364 cagaatgtaacggtggtcgtcgaaaacccaatgacagtagatgacaaggggaaattggtg 423 Query: 263 agcaacgtcgtagtcgg 279 ||||||||||||||||| Sbjct: 424 agcaacgtcgtagtcgg 440
>gb|AY112520.1| Zea mays CL889_1 mRNA sequence Length = 1158 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 44 ttgatgtatccacatggagcaccttctgtcaaatgtgc 81 |||||||||||| | |||||||| |||||||||||||| Sbjct: 407 ttgatgtatccatacggagcaccgtctgtcaaatgtgc 444
>gb|AC183962.3| Pan troglodytes BAC clone CH251-711F5 from chromosome 6, complete sequence Length = 196547 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 ttttgtgttctatataaaaac 351 ||||||||||||||||||||| Sbjct: 148315 ttttgtgttctatataaaaac 148335
>emb|AL590227.13| Human DNA sequence from clone RP11-343D24 on chromosome 6 Contains a glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene and a novel gene, complete sequence Length = 138027 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 ttttgtgttctatataaaaac 351 ||||||||||||||||||||| Sbjct: 52230 ttttgtgttctatataaaaac 52250
>gb|AC147332.2| Pan troglodytes BAC clone RP43-6C11 from chromosome 7, complete sequence Length = 23935 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 aattacacctgggaaaaattg 300 ||||||||||||||||||||| Sbjct: 19510 aattacacctgggaaaaattg 19530
>dbj|AP002068.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T8O3 Length = 54386 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 431 tgttttttggaatttcaccaa 451 ||||||||||||||||||||| Sbjct: 3222 tgttttttggaatttcaccaa 3242
>ref|NM_124966.1| Arabidopsis thaliana unknown protein AT5G55840 mRNA, complete cds Length = 3825 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 tgatgtatacctgttttgtg 337 |||||||||||||||||||| Sbjct: 2054 tgatgtatacctgttttgtg 2073
>gb|AC159273.4| Mus musculus BAC clone RP23-391G8 from chromosome 7, complete sequence Length = 227709 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ccatgtcacctgcaccatgt 136 |||||||||||||||||||| Sbjct: 54937 ccatgtcacctgcaccatgt 54918
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 atataatgcttcatcagctt 182 |||||||||||||||||||| Sbjct: 2375335 atataatgcttcatcagctt 2375354
>gb|AC112739.5| Rattus norvegicus 7 BAC CH230-108A12 (Children's Hospital Oakland Research Institute) complete sequence Length = 234420 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tcagcttctgttcccacatc 195 |||||||||||||||||||| Sbjct: 111239 tcagcttctgttcccacatc 111220
>gb|AY809924.1| Schistosoma japonicum SJCHGC02321 protein mRNA, partial cds Length = 1298 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 aaagtgttttttggaatttc 446 |||||||||||||||||||| Sbjct: 1081 aaagtgttttttggaatttc 1100
>gb|AC093662.4| Homo sapiens BAC clone RP11-477A19 from 7, complete sequence Length = 48279 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 ttttgtgttctatataaaaa 350 |||||||||||||||||||| Sbjct: 42021 ttttgtgttctatataaaaa 42002
>gb|AC147133.2| Pan troglodytes BAC clone CH251-372A19 from Y, complete sequence Length = 192074 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tctgttcccacatctcagcc 201 |||||||||||||||||||| Sbjct: 166650 tctgttcccacatctcagcc 166669
>ref|XM_810237.1| Trypanosoma cruzi strain CL Brener acyl-CoA dehydrogenase (Tc00.1047053509153.120) partial mRNA Length = 1206 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 ggaattacacctgggaaaaa 297 |||||||||||||||||||| Sbjct: 634 ggaattacacctgggaaaaa 653
>ref|XM_814523.1| Trypanosoma cruzi strain CL Brener acyl-CoA dehydrogenase (Tc00.1047053510303.290) partial mRNA Length = 1206 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 ggaattacacctgggaaaaa 297 |||||||||||||||||||| Sbjct: 634 ggaattacacctgggaaaaa 653
>gb|AC044798.7| Homo sapiens chromosome 16 clone RP11-22D3, complete sequence Length = 165651 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 gcttctgttcccacatctca 198 |||||||||||||||||||| Sbjct: 47027 gcttctgttcccacatctca 47008
>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence Length = 3281944 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 tcaaatgtgccatctgcgat 91 |||||||||||||||||||| Sbjct: 2588995 tcaaatgtgccatctgcgat 2589014
>emb|AL512307.12| Human DNA sequence from clone RP11-285B6 on chromosome 1 Contains part of the RGS7 gene for regulator of G-protein signalling 7, complete sequence Length = 182323 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 gaagaacaaagacacataaa 429 |||||||||||||||||||| Sbjct: 150402 gaagaacaaagacacataaa 150383
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 atataatgcttcatcagctt 182 |||||||||||||||||||| Sbjct: 2318905 atataatgcttcatcagctt 2318924
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 atataatgcttcatcagctt 182 |||||||||||||||||||| Sbjct: 2345281 atataatgcttcatcagctt 2345300
>emb|BX927156.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 9/10 Length = 349115 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 ataaacaccatgtcacctgc 129 |||||||||||||||||||| Sbjct: 310881 ataaacaccatgtcacctgc 310862
>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome Length = 2225959 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ttctgttcccacatctcagc 200 |||||||||||||||||||| Sbjct: 1439191 ttctgttcccacatctcagc 1439210
>dbj|BS000642.2| Pan troglodytes chromosome Y clone: PTB-307G08, complete sequence Length = 162472 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tctgttcccacatctcagcc 201 |||||||||||||||||||| Sbjct: 36037 tctgttcccacatctcagcc 36056
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 tctgttcccacatctcagcc 201 |||||||||||||||||||| Sbjct: 18871369 tctgttcccacatctcagcc 18871350
>gb|AC159216.2| Pan troglodytes BAC clone CH251-477A18 from chromosome unknown, complete sequence Length = 206361 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 158 tctgcatataatgcttcatcagct 181 ||||||| |||||||||||||||| Sbjct: 189622 tctgcatttaatgcttcatcagct 189599
>gb|AC016817.6| Homo sapiens chromosome 10 clone RP11-13G8, complete sequence Length = 159981 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 tctgcatataatgcttcatcagct 181 ||||||| |||||||||||||||| Sbjct: 61281 tctgcatttaatgcttcatcagct 61304
>gb|AC159034.2| Pan troglodytes BAC clone CH251-335D18 from chromosome unknown, complete sequence Length = 170276 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 tctgcatataatgcttcatcagct 181 ||||||| |||||||||||||||| Sbjct: 110046 tctgcatttaatgcttcatcagct 110069
>gb|AC093469.11| Mus musculus chromosome 7, clone RP23-21I4, complete sequence Length = 215022 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ccatgtcacctgcaccatgt 136 |||||||||||||||||||| Sbjct: 211839 ccatgtcacctgcaccatgt 211820
>gb|AC007614.7| Homo sapiens chromosome 16 clone RP11-491F9, complete sequence Length = 192347 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 gcttctgttcccacatctca 198 |||||||||||||||||||| Sbjct: 187956 gcttctgttcccacatctca 187937
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 ataaacaccatgtcacctgc 129 |||||||||||||||||||| Sbjct: 3131161 ataaacaccatgtcacctgc 3131142
>gb|AC146450.5| Pan troglodytes BAC clone clone CH251-552K12 from y, complete sequence Length = 172072 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tctgttcccacatctcagcc 201 |||||||||||||||||||| Sbjct: 82131 tctgttcccacatctcagcc 82150
>emb|BX000984.7| Zebrafish DNA sequence from clone CH211-157C7, complete sequence Length = 160029 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 ttttgtgttctatataaaaa 350 |||||||||||||||||||| Sbjct: 110821 ttttgtgttctatataaaaa 110802
>dbj|AB018120.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWJ3 Length = 42356 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 tgatgtatacctgttttgtg 337 |||||||||||||||||||| Sbjct: 5334 tgatgtatacctgttttgtg 5353
>gb|AC006371.2|AC006371 Homo sapiens BAC clone RP11-304C24 from Y, complete sequence Length = 202354 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 tctgttcccacatctcagcc 201 |||||||||||||||||||| Sbjct: 60102 tctgttcccacatctcagcc 60083
>gb|AC006561.8|AC006561 Homo sapiens 12 PAC RPCI3-474D1 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 60801 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 tacctgttttgtgttctatataaa 348 ||||||||||||||| |||||||| Sbjct: 29231 tacctgttttgtgttatatataaa 29208
>gb|AY449458.1| Oikopleura dioica clone BACOIKO002 4xj18, complete sequence Length = 188193 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 240 tcgacgaaaagggtaaactggtcagcaa 267 |||| ||||| ||||||||||||||||| Sbjct: 175787 tcgaggaaaacggtaaactggtcagcaa 175814
>gb|AC087587.14| Homo sapiens 12 BAC CTC-465D4 (CalTech Human BAC Library C) complete sequence Length = 198842 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 152 aatgaatctgcatataatgcttca 175 |||||||||||||||| ||||||| Sbjct: 147103 aatgaatctgcatatattgcttca 147126 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,577,970 Number of Sequences: 3902068 Number of extensions: 4577970 Number of successful extensions: 97744 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97352 Number of HSP's gapped (non-prelim): 391 length of query: 462 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 440 effective length of database: 17,147,199,772 effective search space: 7544767899680 effective search space used: 7544767899680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
