>gb|AC134928.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1164G01,
              complete sequence
          Length = 151938

 Score =  163 bits (82), Expect = 6e-37
 Identities = 91/94 (96%)
 Strand = Plus / Minus

                                                                          
Query: 321    ccgattatcatgaactggatgaggctgaggtggttcaagcgcaagttcatcgagacgtat 380
              |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 134312 ccgattatcatgaactggatgaggctgaggtggttcaagcgcaagttcgtcgagacgtac 134253

                                                
Query: 381    ctgcagttcatgttcacgtacctcttcttccccg 414
              ||||||||||||||||| ||||||||||||||||
Sbjct: 134252 ctgcagttcatgttcacctacctcttcttccccg 134219



 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                          
Query: 246    gaggaggacatcgacatcctggggatcctgccgccggtggccgagatcgccttcttctac 305
              ||||||||| ||||||||||||||||||||||| |||||||||  ||||||||| | |||
Sbjct: 134482 gaggaggacctcgacatcctggggatcctgccgacggtggccgccatcgccttcgtttac 134423

                      
Query: 306    ctcttcgt 313
              || |||||
Sbjct: 134422 ctgttcgt 134415



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                             
Query: 161    gctgcagaagctggcctccgtgttgcagtgcggcgccatctgggcag 207
              ||||| |||||||||| | | | |||||||||| |||||||||||||
Sbjct: 134667 gctgcggaagctggccgcggcgctgcagtgcggtgccatctgggcag 134621

>gb|AC144742.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0052F16, complete sequence
          Length = 162082

 Score =  163 bits (82), Expect = 6e-37
 Identities = 91/94 (96%)
 Strand = Plus / Minus

                                                                         
Query: 321   ccgattatcatgaactggatgaggctgaggtggttcaagcgcaagttcatcgagacgtat 380
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 78308 ccgattatcatgaactggatgaggctgaggtggttcaagcgcaagttcgtcgagacgtac 78249

                                               
Query: 381   ctgcagttcatgttcacgtacctcttcttccccg 414
             ||||||||||||||||| ||||||||||||||||
Sbjct: 78248 ctgcagttcatgttcacctacctcttcttccccg 78215



 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                         
Query: 246   gaggaggacatcgacatcctggggatcctgccgccggtggccgagatcgccttcttctac 305
             ||||||||| ||||||||||||||||||||||| |||||||||  ||||||||| | |||
Sbjct: 78478 gaggaggacctcgacatcctggggatcctgccgacggtggccgccatcgccttcgtttac 78419

                     
Query: 306   ctcttcgt 313
             || |||||
Sbjct: 78418 ctgttcgt 78411



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 161   gctgcagaagctggcctccgtgttgcagtgcggcgccatctgggcag 207
             ||||| |||||||||| | | | |||||||||| |||||||||||||
Sbjct: 78663 gctgcggaagctggccgcggcgctgcagtgcggtgccatctgggcag 78617

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  163 bits (82), Expect = 6e-37
 Identities = 91/94 (96%)
 Strand = Plus / Minus

                                                                            
Query: 321      ccgattatcatgaactggatgaggctgaggtggttcaagcgcaagttcatcgagacgtat 380
                |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 16286955 ccgattatcatgaactggatgaggctgaggtggttcaagcgcaagttcgtcgagacgtac 16286896

                                                  
Query: 381      ctgcagttcatgttcacgtacctcttcttccccg 414
                ||||||||||||||||| ||||||||||||||||
Sbjct: 16286895 ctgcagttcatgttcacctacctcttcttccccg 16286862



 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                            
Query: 246      gaggaggacatcgacatcctggggatcctgccgccggtggccgagatcgccttcttctac 305
                ||||||||| ||||||||||||||||||||||| |||||||||  ||||||||| | |||
Sbjct: 16287125 gaggaggacctcgacatcctggggatcctgccgacggtggccgccatcgccttcgtttac 16287066

                        
Query: 306      ctcttcgt 313
                || |||||
Sbjct: 16287065 ctgttcgt 16287058



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 161      gctgcagaagctggcctccgtgttgcagtgcggcgccatctgggcag 207
                ||||| |||||||||| | | | |||||||||| |||||||||||||
Sbjct: 16287310 gctgcggaagctggccgcggcgctgcagtgcggtgccatctgggcag 16287264



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    gacggtgagcggggaggagg 252
              ||||||||||||||||||||
Sbjct: 187870 gacggtgagcggggaggagg 187851

>dbj|AK061434.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A08, full
           insert sequence
          Length = 975

 Score =  163 bits (82), Expect = 6e-37
 Identities = 91/94 (96%)
 Strand = Plus / Plus

                                                                       
Query: 321 ccgattatcatgaactggatgaggctgaggtggttcaagcgcaagttcatcgagacgtat 380
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 463 ccgattatcatgaactggatgaggctgaggtggttcaagcgcaagttcgtcgagacgtac 522

                                             
Query: 381 ctgcagttcatgttcacgtacctcttcttccccg 414
           ||||||||||||||||| ||||||||||||||||
Sbjct: 523 ctgcagttcatgttcacctacctcttcttccccg 556



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 127/153 (83%), Gaps = 3/153 (1%)
 Strand = Plus / Plus

                                                                       
Query: 161 gctgcagaagctggcctccgtgttgcagtgcggcgccatctgggcagnggngcaagcccc 220
           ||||| |||||||||| | | | |||||||||| ||||||||||||| ||   | |||||
Sbjct: 211 gctgcggaagctggccgcggcgctgcagtgcggtgccatctgggcagcggttgaggcccc 270

                                                                       
Query: 221 ggctgctctggcgacggtgagcggggaggaggacatcgacatcctggggatcctgccgcc 280
           ||| || ||||||   ||||  || ||||||||| ||||||||||||||||||||||| |
Sbjct: 271 ggcggcgctggcg---gtgacgggcgaggaggacctcgacatcctggggatcctgccgac 327

                                            
Query: 281 ggtggccgagatcgccttcttctacctcttcgt 313
           ||||||||  ||||||||| | ||||| |||||
Sbjct: 328 ggtggccgccatcgccttcgtttacctgttcgt 360

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                                  
Query: 348      aggtggttcaagcgcaagttcatcgagacgtatctgcagttcatgttcac 397
                ||||||||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct: 14537855 aggtggttcgagcgcaagttcgtcgagacgtacctgcagttcatgttcac 14537806

>dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1294_G06
          Length = 115468

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                               
Query: 348   aggtggttcaagcgcaagttcatcgagacgtatctgcagttcatgttcac 397
             ||||||||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct: 36144 aggtggttcgagcgcaagttcgtcgagacgtacctgcagttcatgttcac 36095

>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 269    gatcctgccgccggtggccgag 290
              ||||||||||||||||||||||
Sbjct: 899501 gatcctgccgccggtggccgag 899480

>ref|XM_475062.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2811

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 gacggtgagcggggaggagg 252
           ||||||||||||||||||||
Sbjct: 102 gacggtgagcggggaggagg 83

>ref|XM_752437.1| Ustilago maydis 521 hypothetical protein (UM01383.1) partial mRNA
          Length = 3903

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 15  cccgtcgcgtcctcgctgcc 34
           ||||||||||||||||||||
Sbjct: 589 cccgtcgcgtcctcgctgcc 608

>emb|AL032639.1|CEY38F1A Caenorhabditis elegans YAC Y38F1A, complete sequence
          Length = 76169

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 295   ccttcttctacctcttcgtt 314
             ||||||||||||||||||||
Sbjct: 53507 ccttcttctacctcttcgtt 53488

>gb|AC140307.3| Mus musculus BAC clone RP23-389D15 from chromosome 19, complete sequence
          Length = 187731

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    gctgcagaagctggcctccg 180
              ||||||||||||||||||||
Sbjct: 170495 gctgcagaagctggcctccg 170514

>gb|AC129188.3| Mus musculus BAC clone RP23-446G23 from chromosome 19, complete
             sequence
          Length = 175245

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   gctgcagaagctggcctccg 180
             ||||||||||||||||||||
Sbjct: 20553 gctgcagaagctggcctccg 20572

>ref|XM_537004.2| PREDICTED: Canis familiaris similar to ATP-binding cassette,
            sub-family A member 3 (LOC479879), mRNA
          Length = 5277

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 302  ctacctcttcgttgctcccc 321
            ||||||||||||||||||||
Sbjct: 1332 ctacctcttcgttgctcccc 1351

>emb|AL359252.17| Human DNA sequence from clone RP11-111H14 on chromosome 6 Contains part
             of the UST gene for uronyl-2-sulfotransferase and two CpG
             islands, complete sequence
          Length = 178929

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 378   tatctgcagttcatgttcac 397
             ||||||||||||||||||||
Sbjct: 99652 tatctgcagttcatgttcac 99671

>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 264     ctggggatcctgccgccggtggcc 287
               ||||||||||||||||||| ||||
Sbjct: 2237702 ctggggatcctgccgccgggggcc 2237679

>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 264     ctggggatcctgccgccggtggcc 287
               ||||||||||||||||||| ||||
Sbjct: 1982320 ctggggatcctgccgccgggggcc 1982343

>gb|AC010427.5| Homo sapiens chromosome 5 clone CTD-2198K18, complete sequence
          Length = 68883

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    cctccccgtcgcgtcctcgc 30
             ||||||||||||||||||||
Sbjct: 16476 cctccccgtcgcgtcctcgc 16495

>gb|AC026740.6| Homo sapiens chromosome 5 clone CTD-2589H19, complete sequence
          Length = 201464

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     cctccccgtcgcgtcctcgc 30
              ||||||||||||||||||||
Sbjct: 174624 cctccccgtcgcgtcctcgc 174643



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    cctccccgtcgcgtcctcgc 30
             ||||||||||||||||||||
Sbjct: 83234 cctccccgtcgcgtcctcgc 83253

>dbj|AK105679.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-B03, full
           insert sequence
          Length = 3336

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 gacggtgagcggggaggagg 252
           ||||||||||||||||||||
Sbjct: 215 gacggtgagcggggaggagg 196

>dbj|AK103271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124H21, full
           insert sequence
          Length = 3259

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 gacggtgagcggggaggagg 252
           ||||||||||||||||||||
Sbjct: 155 gacggtgagcggggaggagg 136

>gb|AC161465.3| Gallus gallus BAC clone CH261-97D4 from chromosome ul, complete sequence
          Length = 213337

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 331    tgaactggatgaggctgaggtggt 354
              ||||| ||||||||||||||||||
Sbjct: 208721 tgaacaggatgaggctgaggtggt 208744

>emb|CR450845.14| Zebrafish DNA sequence from clone DKEY-63K7 in linkage group 2,
             complete sequence
          Length = 232604

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 330   atgaactggatgaggctgaggtgg 353
             |||| |||||||||||||||||||
Sbjct: 38767 atgacctggatgaggctgaggtgg 38744

>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12,
             complete sequence
          Length = 160603

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   gacggtgagcggggaggagg 252
             ||||||||||||||||||||
Sbjct: 70054 gacggtgagcggggaggagg 70035


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,051,011
Number of Sequences: 3902068
Number of extensions: 3051011
Number of successful extensions: 56991
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56763
Number of HSP's gapped (non-prelim): 227
length of query: 414
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 392
effective length of database: 17,147,199,772
effective search space: 6721702310624
effective search space used: 6721702310624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)