ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27c20 |
|---|---|
| Clone Library Name | barley_pub |
>MATK_TIGPA (Q4H178) Maturase K (Intron maturase)| Length = 522 Score = 30.4 bits (67), Expect = 1.2 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 172 FFSLWRYYFASWYQTFASACTQI 104 F +LW+YYF WYQ++ Q+ Sbjct: 317 FVNLWQYYFHFWYQSYRIRINQL 339
>MATK_WATAN (Q4H174) Maturase K (Intron maturase)| Length = 522 Score = 30.0 bits (66), Expect = 1.6 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 172 FFSLWRYYFASWYQTFASACTQI 104 F +LW+YYF WYQ++ Q+ Sbjct: 317 FVNLWQYYFHFWYQSYRIHINQL 339
>MATK_PILTE (Q4H186) Maturase K (Intron maturase)| Length = 522 Score = 30.0 bits (66), Expect = 1.6 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 172 FFSLWRYYFASWYQTFASACTQI 104 F +LW+YYF WYQ++ Q+ Sbjct: 317 FVNLWQYYFHFWYQSYRIHINQL 339
>MATK_MICJU (Q4H192) Maturase K (Intron maturase)| Length = 522 Score = 30.0 bits (66), Expect = 1.6 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 172 FFSLWRYYFASWYQTFASACTQI 104 F +LW+YYF WYQ++ Q+ Sbjct: 317 FVNLWQYYFYFWYQSYRIHINQL 339
>MATK_LAPNE (Q4H195) Maturase K (Intron maturase)| Length = 522 Score = 30.0 bits (66), Expect = 1.6 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 172 FFSLWRYYFASWYQTFASACTQI 104 F +LW+YYF WYQ++ Q+ Sbjct: 317 FVNLWQYYFHFWYQSYRIHINQL 339
>MATK_IRITE (Q5GF59) Maturase K (Intron maturase)| Length = 522 Score = 30.0 bits (66), Expect = 1.6 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 172 FFSLWRYYFASWYQTFASACTQI 104 F +LW+YYF WYQ++ Q+ Sbjct: 317 FVNLWQYYFNFWYQSYRIHINQL 339
>MATK_IRIOR (Q5GF70) Maturase K (Intron maturase)| Length = 522 Score = 30.0 bits (66), Expect = 1.6 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 172 FFSLWRYYFASWYQTFASACTQI 104 F +LW+YYF WYQ++ Q+ Sbjct: 317 FVNLWQYYFHFWYQSYRIHINQL 339
>MATK_GLAPA (Q4H1A5) Maturase K (Intron maturase)| Length = 522 Score = 30.0 bits (66), Expect = 1.6 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 172 FFSLWRYYFASWYQTFASACTQI 104 F +LW+YYF WYQ++ Q+ Sbjct: 317 FVNLWQYYFHFWYQSYRIHINQL 339
>MATK_BELCH (Q4H1A1) Maturase K (Intron maturase)| Length = 522 Score = 30.0 bits (66), Expect = 1.6 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 172 FFSLWRYYFASWYQTFASACTQI 104 F +LW+YYF WYQ++ Q+ Sbjct: 317 FVNLWQYYFHFWYQSYRIHINQL 339
>MATK_IRICR (Q5GF67) Maturase K (Intron maturase)| Length = 520 Score = 30.0 bits (66), Expect = 1.6 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 172 FFSLWRYYFASWYQTFASACTQI 104 F +LW+YYF WYQ++ Q+ Sbjct: 315 FVNLWQYYFHFWYQSYRIHINQL 337
>MATK_IRISE (Q5GF62) Maturase K (Intron maturase)| Length = 526 Score = 30.0 bits (66), Expect = 1.6 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 172 FFSLWRYYFASWYQTFASACTQI 104 F +LW+YYF WYQ++ Q+ Sbjct: 321 FVTLWQYYFHFWYQSYRIHINQL 343
>MATK_IRIPS (Q5GF63) Maturase K (Intron maturase)| Length = 526 Score = 30.0 bits (66), Expect = 1.6 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 172 FFSLWRYYFASWYQTFASACTQI 104 F +LW+YYF WYQ++ Q+ Sbjct: 321 FVNLWQYYFNFWYQSYRIHINQL 343
>MATK_LYCCR (Q5D873) Maturase K (Intron maturase)| Length = 517 Score = 29.6 bits (65), Expect = 2.0 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = -1 Query: 256 LHHLRHSSSNWFHHQTGTDWSAVHKIHVFFSL-WRYYFASWYQTFASACTQI*LKEC 89 L+++R+ S+ F G +HK +F + W+YYF SW++ + C + K+C Sbjct: 292 LYYVRYGSN--FIVAVGGTKFLIHKWKYYFIIFWQYYFHSWFRPY-RICIRKSSKDC 345
>LATS2_HUMAN (Q9NRM7) Serine/threonine-protein kinase LATS2 (EC 2.7.11.1) (Large| tumor suppressor homolog 2) (Serine/threonine-protein kinase kpm) (Kinase phosphorylated during mitosis protein) (Warts-like kinase) Length = 1088 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/38 (44%), Positives = 21/38 (55%) Frame = -3 Query: 116 LHPNLTERVLRRTPPATRTQLGPSPWAWLTFPAFCTLP 3 LHP + RVLR P +T +GPS AW+ PA P Sbjct: 441 LHPVKSVRVLR---PEPQTAVGPSHPAWVPAPAPAPAP 475
>MATK_CHAOB (Q9MSV4) Maturase K (Intron maturase)| Length = 509 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/59 (23%), Positives = 28/59 (47%) Frame = -1 Query: 301 HQVLIKNLQVLA*FPLHHLRHSSSNWFHHQTGTDWSAVHKIHVFFSLWRYYFASWYQTF 125 H++ K + +L +H++R+ + + GT + F W+YYF W+Q + Sbjct: 258 HKISTKKIWLLKDSFIHYVRYGERSLIALK-GTHLQVKKCRYHLFHFWQYYFHLWFQPY 315
>DHH1_GIBZE (Q4HW67) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)| Length = 486 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = +1 Query: 172 RHGSCELHSNLYRFDDETNCYCCVSDGGVEIKQGPAS 282 R+G L NL +DD N Y D G EI+ PAS Sbjct: 372 RYGHLGLAINLINWDDRFNLYNIERDLGTEIQPIPAS 408
>FCGR3_RAT (P27645) Low affinity immunoglobulin gamma Fc region receptor III| precursor (IgG Fc receptor III) (Fc-gamma RIII) (FcRIII) Length = 267 Score = 28.1 bits (61), Expect = 5.9 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -1 Query: 298 QVLIKNLQVLA*FPLHHLRHSSSNWFHHQTGTDWSAVHKIHVF 170 QVL ++ L H+ +SS+ WFH+Q+ T W V + F Sbjct: 51 QVLKEDTVTLTCEGTHNPGNSSTQWFHNQSST-WGQVQASYTF 92
>MATK_IRISA (Q5GF60) Maturase K (Intron maturase)| Length = 522 Score = 28.1 bits (61), Expect = 5.9 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -1 Query: 166 SLWRYYFASWYQTFASACTQI 104 +LW+YYF WYQ++ Q+ Sbjct: 319 NLWQYYFHFWYQSYRIHMNQL 339
>MATK_IRIDA (Q5GF76) Maturase K (Intron maturase)| Length = 522 Score = 28.1 bits (61), Expect = 5.9 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = -1 Query: 172 FFSLWRYYFASWYQTFASACTQI 104 F +LW+Y+F WYQ++ Q+ Sbjct: 317 FVNLWQYHFHFWYQSYRIHINQL 339
>MATK_RUSAC (Q9TN87) Maturase K (Intron maturase)| Length = 520 Score = 28.1 bits (61), Expect = 5.9 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = -1 Query: 178 HVFFSLWRYYFASWYQTFASACTQI 104 ++FF+ W+YYF W Q + Q+ Sbjct: 313 YLFFNFWQYYFHVWSQPYRIHINQL 337
>GP5D_CHLTR (P10559) Virulence plasmid parA family protein pGP5-D (Protein P-9)| Length = 264 Score = 28.1 bits (61), Expect = 5.9 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 10/84 (11%) Frame = +1 Query: 73 GGVLLSTLSVRFGCKLKQ-------MFDTKKQNNTSR---AKRRHGSCELHSNLYRFDDE 222 GG +TLS+ GC L Q + D Q+N S A R LH +Y +D Sbjct: 11 GGTGKTTLSLNVGCNLAQFLGKKVLLADLDPQSNLSSGLGASVRSNQKGLHDIVYTSNDL 70 Query: 223 TNCYCCVSDGGVEIKQGPASSLSK 294 + C V++ PAS LS+ Sbjct: 71 KSIICETKKDSVDLI--PASFLSE 92
>LATS2_MOUSE (Q7TSJ6) Serine/threonine-protein kinase LATS2 (EC 2.7.11.1) (Large| tumor suppressor homolog 2) (Serine/threonine-protein kinase kpm) (Kinase phosphorylated during mitosis protein) Length = 1042 Score = 27.7 bits (60), Expect = 7.7 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -3 Query: 116 LHPNLTERVLRRTPPATRTQLGPSPWAWLTFP 21 LHP + RVLR P +T +GPS AW+ P Sbjct: 411 LHPVKSVRVLR---PEPQTAVGPSHPAWVAAP 439
>MATK_DIAEN (Q6LA20) Maturase K (Intron maturase)| Length = 522 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Frame = -1 Query: 256 LHHLRHSSSNWFHHQ-TGTDWSAVHKIHVFFSLWRYYFASWYQTF 125 +H++R+ + TGT ++FF W+YYF W Q + Sbjct: 288 MHYVRYEGKAILASKGTGTPLLMKKWKYLFFHFWQYYFHFWSQPY 332
>MATK_CHALA (Q9MSV6) Maturase K (Intron maturase) (Fragment)| Length = 444 Score = 27.7 bits (60), Expect = 7.7 Identities = 14/59 (23%), Positives = 28/59 (47%) Frame = -1 Query: 301 HQVLIKNLQVLA*FPLHHLRHSSSNWFHHQTGTDWSAVHKIHVFFSLWRYYFASWYQTF 125 H++ K + +L +H++R+ + + GT + F W+YYF W+Q + Sbjct: 258 HKISPKKIWLLKDSFIHYVRYGERSLIALK-GTHLQVKKCRYHLFHFWQYYFHLWFQPY 315
>TOP1_BUCAP (Q8K9P7) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 853 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Frame = +1 Query: 118 LKQMFDTKKQNNTSRAKRRHGSCELHSNLYRFDDETNCYCCVSD---GGVEIKQG 273 L + TKK+ K R C L ++Y ++ + C+++ G +K+G Sbjct: 630 LNDLSTTKKEEKNFHLKNRCKKCNLVMDVYLINENLKIFICINNPSCNGYNLKKG 684 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.132 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,150,965 Number of Sequences: 219361 Number of extensions: 871608 Number of successful extensions: 2203 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2144 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2199 length of database: 80,573,946 effective HSP length: 76 effective length of database: 63,902,510 effective search space used: 1533660240 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
