Clone Information

BLAST Search Result

Clone Name	basd27c19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SPEN_DROME (Q8SX83) Protein split ends	35	0.15
2	ASPX_PAPHA (Q06990) Acrosomal protein SP-10 precursor (Acrosomal...	33	0.34
3	APSB_EMENI (O60039) Anucleate primary sterigmata protein B	33	0.45
4	GRP78_PLAFA (P12794) 78 kDa glucose-regulated protein homolog (G...	32	1.0
5	CCDC6_HUMAN (Q16204) Coiled-coil domain-containing protein 6 (H4...	32	1.0
6	TNR1A_BOVIN (O19131) Tumor necrosis factor receptor superfamily ...	32	1.0
7	SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains prote...	32	1.0
8	ASPX_HUMAN (P26436) Acrosomal protein SP-10 precursor (Acrosomal...	32	1.0
9	GRP78_PLAFO (Q05866) 78 kDa glucose-regulated protein homolog pr...	32	1.3
10	F10A1_MOUSE (Q99L47) Hsc70-interacting protein (Hip) (Protein ST...	32	1.3
11	SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains pro...	32	1.3
12	HES1_MOUSE (P35428) Transcription factor HES-1 (Hairy and enhanc...	32	1.3
13	BCB2_ARATH (O80517) Uclacyanin-2 precursor (Uclacyanin-II) (Blue...	31	1.7
14	PPE2_MOUSE (O35385) Serine/threonine-protein phosphatase with EF...	31	2.2
15	USO1_YEAST (P25386) Intracellular protein transport protein USO1...	30	2.9
16	AMDR_ASPFU (Q4WK35) Acetamidase regulatory protein	30	2.9
17	LVA_DROME (Q8MSS1) Protein lava lamp	30	3.8
18	F100A_MOUSE (Q6P3B2) Protein FAM100A	30	3.8
19	COT1_HUMAN (P10589) COUP transcription factor 1 (COUP-TF1) (COUP...	30	3.8
20	CLCN1_CANFA (Q9MZT1) Chloride channel protein, skeletal muscle (...	30	3.8
21	NAPC_RHOS4 (Q53178) Cytochrome c-type protein napC	30	5.0
22	PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor typ...	30	5.0
23	CDR2_SCHPO (P87050) Mitosis inducer protein kinase cdr2 (EC 2.7....	30	5.0
24	SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich...	30	5.0
25	CD008_HUMAN (P78312) Protein C4orf8 (Protein IT14)	30	5.0
26	Y091_NPVAC (P41479) Hypothetical 24.1 kDa protein in LEF4-P33 in...	29	6.5
27	GEI8_CAEEL (P34333) Gex-3-interacting protein 8	29	6.5
28	PSIP1_BOVIN (Q8MJG1) PC4 and SFRS1-interacting protein (Lens epi...	29	6.5
29	CUTL2_HUMAN (O14529) Homeobox protein cut-like 2 (Homeobox prote...	29	6.5
30	TBX10_HUMAN (O75333) T-box transcription factor TBX10 (T-box pro...	29	6.5
31	COT1_MOUSE (Q60632) COUP transcription factor 1 (COUP-TF1) (COUP...	29	6.5
32	VGLB_BHV1P (P17471) Glycoprotein I precursor (Glycoprotein GVP-6...	29	8.5
33	MYH11_RABIT (P35748) Myosin-11 (Myosin heavy chain, smooth muscl...	29	8.5
34	MYH11_MOUSE (O08638) Myosin-11 (Myosin heavy chain, smooth muscl...	29	8.5
35	HES1_RAT (Q04666) Transcription factor HES-1 (Hairy and enhancer...	29	8.5
36	VGLB_BHV1C (P12640) Glycoprotein I precursor (Glycoprotein GVP-6...	29	8.5
37	IF5_MAIZE (P55876) Eukaryotic translation initiation factor 5 (e...	29	8.5
38	DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-re...	29	8.5
39	GUN1_ACICE (P54583) Endoglucanase E1 precursor (EC 3.2.1.4) (End...	29	8.5
40	CN032_MOUSE (Q8BH93) Protein C14orf32 homolog	29	8.5
41	PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteaso...	29	8.5
42	COT1_BOVIN (Q9TTR8) COUP transcription factor 1 (COUP-TF1) (COUP...	29	8.5
43	P53_CERAE (P13481) Cellular tumor antigen p53 (Tumor suppressor ...	29	8.5

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = +3

Query: 204  RHQLEENSRLKEELMRKTTELNIIRSEAANQTSSGGLDQDRAVEPYGNSDRNNMSSDDQR 383
            R + +E    K E +R  TE  +  S   N TSS  L ++       +    +M +    
Sbjct: 2739 RRKHKERKEKKREKLRNMTEATVPNSPTTNDTSSEKLSKEERHRLKKSKKSKSMDNSCNT 2798

Query: 384  LLRNSSSLPASSQPTLP 434
             + NSS    S+ P+LP
Sbjct: 2799 KIYNSSGAHPSTSPSLP 2815

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>ASPX_PAPHA (Q06990) Acrosomal protein SP-10 precursor (Acrosomal vesicle|
           protein 1)
          Length = 285

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 393 NSSSLPASSQPTLPGHHNREYLDGDQPGGMSRKPSGEHI 509
           ++ S  AS +P   GH   E+  G+QP G   +PSGEH+
Sbjct: 88  HAESEHASGEPAATGHAEGEHTVGEQPSG--EQPSGEHL 124

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>APSB_EMENI (O60039) Anucleate primary sterigmata protein B|
          Length = 1051

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +3

Query: 186 DAEATIRHQL-EENSRLKEELMRKTTELNIIRSEAANQTSSGGLDQDRAVEPYGNSDRNN 362
           DAE   R Q  EEN RL+EELMR  +E     + AA    SG  ++       G+S  ++
Sbjct: 168 DAETAAREQADEENKRLREELMRVRSEATYAIAPAA-PLRSGHRNR-------GDSLVSH 219

Query: 363 MSSDDQRLLRNSSSLPASS 419
            +  D+ L RN+++  +SS
Sbjct: 220 SAVSDRELYRNTAAGSSSS 238

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>GRP78_PLAFA (P12794) 78 kDa glucose-regulated protein homolog (GRP 78)|
           (Antigenic heat shock protein 70) (HSP70-2) (Fragment)
          Length = 279

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
 Frame = +3

Query: 165 QVMRAVEDAEATIRHQLEENSRLKEELMRKTTELNIIRSEAANQTSSGGLDQDRAVEPYG 344
           Q+ + + DAE       +E+  L+E++  K    N I+S  A        D+D+  +   
Sbjct: 160 QIEKMINDAEKFA----DEDKNLREKVEAKNNLDNYIQSMKATVE-----DKDKLADKIE 210

Query: 345 NSDRN---------------NMSSDDQRLLRNSSSLPASSQPTLPGHHNREYLDGDQPGG 479
             D+N               N ++D + L +    L A  QP +   +        QPGG
Sbjct: 211 KEDKNTILSAVKDAEDWLNNNSNADSEALKQKLKDLEAVCQPIIVKLYG-------QPGG 263

Query: 480 MSRKPSGE 503
            S +PSG+
Sbjct: 264 PSPQPSGD 271

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>CCDC6_HUMAN (Q16204) Coiled-coil domain-containing protein 6 (H4 protein)|
           (Papillary thyroid carcinoma-encoded protein)
          Length = 585

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
 Frame = +3

Query: 204 RHQLEENSRLKEELMRKTTELNIIRSEAANQTSSGGLDQDRAVEPYGNSDRNNMSSDDQR 383
           RH  EEN RL+ +L R+      +  + +   SS  +D +R          N MS+   R
Sbjct: 295 RHMREENLRLQRKLQREMERREALCRQLSESESSLEMDDERYF--------NEMSAQGLR 346

Query: 384 LLRNSSSL-----PASSQPTLPG 437
               SS +     P+SS+P  PG
Sbjct: 347 PRTVSSPIPYTPSPSSSRPISPG 369

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>TNR1A_BOVIN (O19131) Tumor necrosis factor receptor superfamily member 1A|
           precursor (p60) (TNF-R1) (TNF-RI) (TNFR-I) (p55)
          Length = 471

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = +1

Query: 1   ERSPGGGPASPRVSFASPHPPASPIQPGAWPTPTTCWPG 117
           +RS  G  ASP    A PH  A PI PG   +   C PG
Sbjct: 293 DRSNFGAVASPSSETAPPHLKAGPILPGPPASTHLCTPG 331

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>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon)
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2167

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +1

Query: 13   GGGPASPRVSFASPHPPASPIQPGAWPTPTTCWPGG 120
            GGG +SP     SP P  SP+ P   P PT   P G
Sbjct: 1196 GGGGSSP-----SPAPATSPVPPSPSPVPTPASPSG 1226

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>ASPX_HUMAN (P26436) Acrosomal protein SP-10 precursor (Acrosomal vesicle|
           protein 1)
          Length = 265

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 279 SEAANQTSSGGLDQDRAVEPYGNSDRNNMSSD--DQRLLRNSSSLPASSQPTLPGHHNRE 452
           +EA  +TSSG       +  +G+S+  +      +     ++ S  AS +P    H   E
Sbjct: 52  AEALYETSSGL----NTLSEHGSSEHGSSKHTVAEHTSGEHAESEHASGEPAATEHAEGE 107

Query: 453 YLDGDQPGGMSRKPSGEHI 509
           +  G+QP G   +PSGEH+
Sbjct: 108 HTVGEQPSG--EQPSGEHL 124

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>GRP78_PLAFO (Q05866) 78 kDa glucose-regulated protein homolog precursor (GRP|
           78)
          Length = 655

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
 Frame = +3

Query: 165 QVMRAVEDAEATIRHQLEENSRLKEELMRKTTELNIIRSEAANQTSSGGLDQDRAVEPYG 344
           Q+ + + DAE       +E+  L+E++  K    N I+S  A        D+D+  +   
Sbjct: 536 QIEKMINDAEKFA----DEDKNLREKVEAKNKLDNYIQSMKATVE-----DKDKLADKIE 586

Query: 345 NSDRN---------------NMSSDDQRLLRNSSSLPASSQPTLPGHHNREYLDGDQPGG 479
             D+N               N ++D + L +    L A  QP +   +        QPGG
Sbjct: 587 KEDKNTILSAVKDAEDWLNNNSNADSEALKQKLKDLEAVCQPIIVKLYG-------QPGG 639

Query: 480 MSRKPSGE 503
            S +PSG+
Sbjct: 640 PSPQPSGD 647

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>F10A1_MOUSE (Q99L47) Hsc70-interacting protein (Hip) (Protein ST13 homolog)|
           (Protein FAM10A1)
          Length = 371

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +3

Query: 195 ATIRHQLEENSRLKEELMRKTTELNIIRSEAANQTSSGGLDQDRAVEP 338
           AT + + EEN+  KEE   KTTE NI   E +++ S   +D +  +EP
Sbjct: 45  ATHKAKSEENT--KEEKRDKTTEENIKTEELSSEESDLEIDNEGVIEP 90

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>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2161

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +1

Query: 13   GGGPASPRVSFASPHPPASPIQPGAWPTPTTCWPGG 120
            GGG +SP     SP P  SP+ P   P PT   P G
Sbjct: 1192 GGGGSSP-----SPAPAMSPVPPSPSPVPTPASPSG 1222

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>HES1_MOUSE (P35428) Transcription factor HES-1 (Hairy and enhancer of split 1)|
          Length = 282

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 10  PGGGPASPR-VSFASPHPPASPIQPGAWPTP 99
           P  GPA P+   FA P PP  PI  GA P P
Sbjct: 170 PPSGPAGPQHAPFAPPPPPLVPIPGGAAPPP 200

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>BCB2_ARATH (O80517) Uclacyanin-2 precursor (Uclacyanin-II) (Blue|
           copper-binding protein II) (BCB II) (Phytocyanin 2)
          Length = 202

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 16  GGPASPRVSFASPHPPASPIQP--GAWPTPTTCWPG 117
           G PA+P    ++P  P +P  P  G  PTPTT  PG
Sbjct: 130 GPPATPTPPSSTPGTPTTPESPPSGGSPTPTTPTPG 165

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>PPE2_MOUSE (O35385) Serine/threonine-protein phosphatase with EF-hands 2 (EC|
           3.1.3.16) (PPEF-2)
          Length = 757

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 253 RPQSSTSSGQRPQTKLLQAAWIRTVPSSPTETRTGITCHQMTKGCS 390
           R  + TSSGQ+P    L  +  R++PSSP    +G   ++  + CS
Sbjct: 332 RKDNQTSSGQKPTPWFLPQS--RSLPSSPFHLGSGFKAYKAGRSCS 375

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>USO1_YEAST (P25386) Intracellular protein transport protein USO1 (Int-1)|
          Length = 1790

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 153  SNLFQVMRAVEDAEATIRHQLEENSRLKEELMRKTTELNIIRSEAAN 293
            S L   ++A ED  +      +E+ ++KEEL  KTTEL I   +  N
Sbjct: 1275 SELEDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKIQLEKITN 1321

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>AMDR_ASPFU (Q4WK35) Acetamidase regulatory protein|
          Length = 772

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = +3

Query: 198 TIRHQLEENSRLKEELMRKTTELNIIRSEAANQTSSGGLDQDRAVEPYGNSDRNNMSSDD 377
           TI    E++ RL+++L   T+E +   S   +Q  +  LDQ++    + ++D        
Sbjct: 609 TILRLFEDSKRLQKDLRLATSERSRPFSSTQDQPQAQALDQNKNQHQHSSADAPVQPPQP 668

Query: 378 QRLLRNSSSLPASSQPTLP 434
            RLL +  S P     +LP
Sbjct: 669 DRLLPSYDS-PTPDSTSLP 686

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>LVA_DROME (Q8MSS1) Protein lava lamp|
          Length = 2779

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
 Frame = +3

Query: 168 VMRAVEDAEATIRHQLEENSRLK-------EELMRKTTELNII 275
           V + +E+ EATI  QL E    K       EEL  KTTELN++
Sbjct: 408 VSQRLEELEATIAAQLLELQEQKSAMAAQNEELAEKTTELNVL 450

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>F100A_MOUSE (Q6P3B2) Protein FAM100A|
          Length = 176

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 13  GGGPASPRVSFASPHPPASPIQPGAWPTPTTCWP 114
           GGG +SP  + A+  PP  P   G++ TP+  WP
Sbjct: 93  GGGSSSPMATSATSPPPHFPHATGSFATPS--WP 124

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>COT1_HUMAN (P10589) COUP transcription factor 1 (COUP-TF1) (COUP-TF I)|
           (V-ERBA-related protein EAR-3)
          Length = 423

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 13  GGGPASPRVSFASPHPPASPIQPGAWPTPTTCWPGG 120
           G G    +    +PH P +P QPGA  TP T    G
Sbjct: 36  GAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKG 71

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>CLCN1_CANFA (Q9MZT1) Chloride channel protein, skeletal muscle (Chloride|
           channel protein 1) (ClC-1)
          Length = 976

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 378 QRLLRNSSSLPASSQPT-LPGHHNREYLDGDQPGGMSRK 491
           Q  L   + L A+++PT + GH+ +++ D +Q  GMS+K
Sbjct: 43  QHRLHRDAGLRANTRPTQIYGHYKQQFSDKEQDTGMSKK 81

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>NAPC_RHOS4 (Q53178) Cytochrome c-type protein napC|
          Length = 227

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 477 HRAGLHPGTPDCDGQAEWVEKKPAGKKSCGATFGHL 370
           +R+G+  G PDC    EW +K     ++    +GHL
Sbjct: 76  NRSGVRAGCPDCHVPHEWTDKIARKMQASKEVWGHL 111

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>PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor type 23 (EC|
           3.1.3.48) (His-domain-containing protein tyrosine
           phosphatase) (HD-PTP) (Protein tyrosine phosphatase
           TD14) (PTP-TD14) (Fragment)
          Length = 1499

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 10  PGGGPASPRVSFASPHP-PASPIQPGAWPTPTT 105
           PG  PA P+  F  P P P S  QP   PTP T
Sbjct: 723 PGPAPAPPQPCFPVPQPVPQSVPQPQPLPTPYT 755

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>CDR2_SCHPO (P87050) Mitosis inducer protein kinase cdr2 (EC 2.7.11.1)|
          Length = 775

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
 Frame = +3

Query: 270 IIRSEAANQTSSGGLDQDRAVEPYGNSDRNNMS-----SDDQRLLRNSSSLPAS-SQPTL 431
           + R    N+  S  +D +   +PY N+  NN       S ++ +  + S  PAS     +
Sbjct: 537 VTRFNVGNEQFSNNIDNNNYNQPYANATMNNSRRLRTPSGERSMRADLSQSPASYDSLNV 596

Query: 432 PGHHNREYLDGDQPGGMSRKPSG 500
           P H  R+ L    P    +K SG
Sbjct: 597 PKHRRRQSL--FSPSSTKKKLSG 617

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>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 7   SPGGGPASPRVSFASPH-PPASPIQPGAWPTPTTCWP 114
           +PG G A P  S A P  PP S   PG+ P PT   P
Sbjct: 118 APGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPP 154

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>CD008_HUMAN (P78312) Protein C4orf8 (Protein IT14)|
          Length = 1265

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 14/127 (11%)
 Frame = +3

Query: 153  SNLFQVMRAVEDAEATIRHQLEENSRLKEELMRKTTE---LNIIRSEAANQTSSGG---- 311
            S  F +M+     E   + +L + S+   E  R+ TE       +S+   QT S      
Sbjct: 1031 SFFFDIMQ--HHKEGNGKQKLRQTSKASSEPARRPTEPPKATEGQSKPRAQTESKAKVVD 1088

Query: 312  ---LDQDRAVEPYGNSDRNNMSSDDQRLLRNSSSLPASSQPTLPGHHNRE----YLDGDQ 470
               + + +  E   NS+ NN    +   +++  S P   +PT PG H +       +  Q
Sbjct: 1089 LMSITEQKREERKVNSNNNNKKQLNH--IKDEKSNPTPMEPTSPGEHQQNSKLVLAESPQ 1146

Query: 471  PGGMSRK 491
            P G ++K
Sbjct: 1147 PKGKNKK 1153

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>Y091_NPVAC (P41479) Hypothetical 24.1 kDa protein in LEF4-P33 intergenic|
           region
          Length = 224

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 22  PASPRVSFASPHPPASPIQPGAWPTP 99
           P +P  S  SP PP +PI P   PTP
Sbjct: 55  PPTPTPSPPSPTPPPTPIPPTPTPTP 80

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>GEI8_CAEEL (P34333) Gex-3-interacting protein 8|
          Length = 1780

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +3

Query: 345  NSDRNNMSSDDQRLLRNSSSLPASSQPTLPG 437
            NS+ +++SSDD  + RN   LPA+  P LPG
Sbjct: 1692 NSNVSDVSSDDDDV-RNPEKLPANRLPPLPG 1721

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>PSIP1_BOVIN (Q8MJG1) PC4 and SFRS1-interacting protein (Lens epithelium-derived|
           growth factor) (Fragment)
          Length = 483

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 18/73 (24%), Positives = 36/73 (49%)
 Frame = +3

Query: 204 RHQLEENSRLKEELMRKTTELNIIRSEAANQTSSGGLDQDRAVEPYGNSDRNNMSSDDQR 383
           + Q EE ++ K++  +K     + + +  ++T +GG D   + +P  N D N  S D+  
Sbjct: 400 QRQHEEANKTKDQ-GKKGPNKKLEKEQTGSKTLNGGSDAQDSNQPQHNGDSNEESKDNHE 458

Query: 384 LLRNSSSLPASSQ 422
              +S   P+S +
Sbjct: 459 --ASSKKKPSSEE 469

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>CUTL2_HUMAN (O14529) Homeobox protein cut-like 2 (Homeobox protein Cux-2)|
           (Cut-like 2)
          Length = 1424

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 4   RSPGGGPASPRVSFASPHPPASPIQP 81
           + PG   ASP    +SP PP SP +P
Sbjct: 907 QQPGASQASPTEPRSSPSPPPSPTEP 932

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>TBX10_HUMAN (O75333) T-box transcription factor TBX10 (T-box protein 10)|
          Length = 385

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 383 VAPQLFFPAGFFSTHSAWPSQSGVPGWRPARWHVP 487
           +AP  + P  + S +S  PS  G+P  RPA + +P
Sbjct: 317 LAPATYRPVTYQSLYSGAPSHLGIPRTRPAPYPLP 351

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>COT1_MOUSE (Q60632) COUP transcription factor 1 (COUP-TF1) (COUP-TF I)|
          Length = 422

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 13  GGGPASPRVSFASPHPPASPIQPGAWPTPTT 105
           GG     +    +PH P +P QPGA  TP T
Sbjct: 35  GGAGEQQQAGSGAPHTPQTPGQPGAPATPGT 65

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>VGLB_BHV1P (P17471) Glycoprotein I precursor (Glycoprotein GVP-6)|
           (Glycoprotein 11A) (Glycoprotein 16) (Glycoprotein G130)
          Length = 928

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +1

Query: 22  PASPRVSFASPHPPASPIQPG 84
           PA P    ASP PPASP  PG
Sbjct: 74  PAPPPEEAASPAPPASPSPPG 94

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>MYH11_RABIT (P35748) Myosin-11 (Myosin heavy chain, smooth muscle isoform)|
            (SMMHC)
          Length = 1972

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 156  NLFQVMRAVEDAEATIRHQLEENSRLKEELMRKTTELNIIRSEA 287
            N+   +R +ED   +++ QL+E    K+ L R  + LNI  S++
Sbjct: 1333 NVSTKLRQLEDERNSLQEQLDEEMEAKQNLERHISTLNIQLSDS 1376

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>MYH11_MOUSE (O08638) Myosin-11 (Myosin heavy chain, smooth muscle isoform)|
            (SMMHC)
          Length = 1972

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 156  NLFQVMRAVEDAEATIRHQLEENSRLKEELMRKTTELNIIRSEA 287
            N+   +R +ED   +++ QL+E    K+ L R  + LNI  S++
Sbjct: 1333 NVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDS 1376

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>HES1_RAT (Q04666) Transcription factor HES-1 (Hairy and enhancer of split 1)|
           (Hairy-like) (RHL)
          Length = 281

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 10  PGGGPASPRVSFASPHPPASPIQPGAWPTP 99
           P  GP  P+ +  +P PP  PI  GA P P
Sbjct: 170 PPSGPGGPQHAPFAPPPPLVPIPGGAAPPP 199

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>VGLB_BHV1C (P12640) Glycoprotein I precursor (Glycoprotein GVP-6)|
           (Glycoprotein 11A) (Glycoprotein 16) (Glycoprotein G130)
           (Glycoprotein B)
          Length = 932

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +1

Query: 22  PASPRVSFASPHPPASPIQPG 84
           PA P    ASP PPASP  PG
Sbjct: 74  PAPPPEEAASPAPPASPSPPG 94

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>IF5_MAIZE (P55876) Eukaryotic translation initiation factor 5 (eIF-5)|
          Length = 451

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +3

Query: 216 EENSRLKEELMRKTTELNIIRSEAANQTSSGGLDQDRAVEPYGNSDRNNMSSDD 377
           EE  +LK++  +K ++ +  +      T++ G D+D +  P  + D +  ++DD
Sbjct: 175 EEQKKLKKDAKKKGSKDSTAKGLKKKATTATGSDEDHSSSPTRSHDGDKAAADD 228

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>DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-related formin-2)|
           (DRF2) (mDia3)
          Length = 1098

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +1

Query: 10  PGGGPASPRVSFASPHPPASPIQPGAWPTPTTCWPG 117
           PG GP  P      P PP  P  PG  P P    PG
Sbjct: 553 PGAGPCPP----PPPPPPPPPPLPGVVPPPPPPLPG 584

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>GUN1_ACICE (P54583) Endoglucanase E1 precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase E1) (Cellulase E1)
           (Endocellulase E1)
          Length = 562

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 7   SPGGGPASPRVSFASPHPPASP---IQPGAWPTPT 102
           SP   P++ R    +P P ASP   + P A PTPT
Sbjct: 416 SPSPSPSASRTPTPTPTPTASPTPTLTPTATPTPT 450

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>CN032_MOUSE (Q8BH93) Protein C14orf32 homolog|
          Length = 242

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 4   RSPGGGPASPRVSFASPHPPASPIQPGAWPTPTTCWPG 117
           RSPG  P  P     +P  P   + PGAW  P   +PG
Sbjct: 168 RSPGPYPTVPPPVSGAPPVPWGTVPPGAW-GPAAPYPG 204

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>PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 410

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 153 SNLFQVMRAVEDAEATIRHQLEENSRLKEELMRKTTEL 266
           +N   V++ +ED +  +R   EENS+ K  LM K  +L
Sbjct: 3   NNSQNVLKKIEDLKKEVRMLKEENSKTKRNLMWKIRKL 40

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>COT1_BOVIN (Q9TTR8) COUP transcription factor 1 (COUP-TF1) (COUP-TF I)|
          Length = 424

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 4   RSPGGGPASPRVSFA---SPHPPASPIQPGAWPTPTTCWPGG 120
           R  GGG    +   A   +PH P +P QPGA  TP T    G
Sbjct: 31  RGGGGGAGEQQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKG 72

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>P53_CERAE (P13481) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 393

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 16  GGPASPRVSFASPHPPASPIQP-GAWPTPTTCWP 114
           G   +PR+S A+PH   +P  P  A P P   WP
Sbjct: 59  GPDEAPRMSEAAPHMAPTPAAPTPAAPAPAPSWP 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.125    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,481,508
Number of Sequences: 219361
Number of extensions: 1359068
Number of successful extensions: 7323
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 6230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7257
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result