ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27c16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478942.1| Oryza sativa (japonica cultivar-group), mRNA 583 e-163
2dbj|AK103183.1| Oryza sativa (japonica cultivar-group) cDNA clon... 583 e-163
3dbj|AK070635.1| Oryza sativa (japonica cultivar-group) cDNA clon... 480 e-132
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
5dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
6gb|AY017807.1| Oryza sativa microsatellite MRG0132 containing (A... 109 1e-20
7emb|CR962127.1| Medicago truncatula chromosome 5 clone mth2-181n... 76 1e-10
8ref|XM_476228.1| Oryza sativa (japonica cultivar-group), predic... 44 0.51
9gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.51
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.51
11tpe|BN000602.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 44 0.51
12emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 42 2.0
13emb|BX640436.1| Bordetella parapertussis strain 12822, complete ... 42 2.0
14emb|BX640422.1| Bordetella pertussis strain Tohama I, complete g... 42 2.0
15gb|AF312688.1|AF312688 Mycobacterium celatum plasmid pCLP, compl... 42 2.0
16emb|CT010462.5| Mouse DNA sequence from clone RP23-321N21 on chr... 42 2.0
17emb|AL928658.6| Mouse DNA sequence from clone RP23-238A18 on chr... 42 2.0
18ref|XM_469687.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.9
19gb|AC139513.10| Mus musculus chromosome 15, clone RP23-151N6, co... 40 7.9
20gb|AC117784.13| Mus musculus chromosome 15, clone RP24-545F24, c... 40 7.9
21gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome... 40 7.9
22gb|AC107758.19| Mus musculus chromosome 5, clone RP23-206B16, co... 40 7.9
23gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.9
24gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic ... 40 7.9
25gb|AC125484.4| Mus musculus BAC clone RP23-127L14 from chromosom... 40 7.9
26gb|AC027119.5| Homo sapiens chromosome 3 clone RP11-113L10 map 3... 40 7.9
27gb|AC158775.8| Mus musculus chromosome 19, clone RP23-53N8, comp... 40 7.9
28emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ... 40 7.9
29gb|AC160555.4| Mus musculus chromosome 5, clone RP23-387L12, com... 40 7.9
30gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genom... 40 7.9
31dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
32gb|AC154558.2| Mus musculus BAC clone RP23-240G18 from chromosom... 40 7.9
33gb|AC102755.18| Mus musculus chromosome 19, clone RP24-143E6, co... 40 7.9
34gb|DQ338437.1| Metarhizium anisopliae adhesin protein Mad1 (Mad1... 40 7.9
35gb|AC174082.3| Mus musculus BAC clone RP23-395H10 from chromosom... 40 7.9 
>ref|XM_478942.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1424

 Score =  583 bits (294), Expect = e-163
 Identities = 487/550 (88%), Gaps = 1/550 (0%)
 Strand = Plus / Plus

                                                                       
Query: 22  cgccatggnaggccgtgcgcgcgtcggcggcctgggtggccagccgctcctcccacgtca 81
           |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 67  cgccatgg-aggccgtgcgcgcgtcggcggcgtgggtggccagccgctcctcccacgtca 125

                                                                       
Query: 82  aggttgacatgctagagattgagaaggccgtggacaaaattcaggggaatgttccaaaag 141
           |||| |||||| ||||| | |||||||  ||||||||||| || || |||||||||||||
Sbjct: 126 aggtcgacatgttagaggtcgagaaggtggtggacaaaatccaaggaaatgttccaaaag 185

                                                                       
Query: 142 tcgagtgggatttcgaaggaatccattactttgacaatggaccgctcactgtgcagtacc 201
           | || ||||| ||||||||||| || || |||||| |||| || |||||||| |||||||
Sbjct: 186 ttgaatgggacttcgaaggaattcactattttgacgatggccccctcactgtccagtacc 245

                                                                       
Query: 202 tcttcgtcttggatgcgctgaacttttgcttctggccagacaaggacttgacctatgaca 261
           |||||||| ||||||| |||||||| |||||||||||||| |||||  ||| ||||||| 
Sbjct: 246 tcttcgtcctggatgctctgaacttctgcttctggccagataaggatctgagctatgacc 305

                                                                       
Query: 262 atttggcttctggacttaagttagcattagagaaagataagtcagcacttgatgcagatc 321
           |||||||||||||||| |||||||| ||||||||||||||| |||| |||||||||||||
Sbjct: 306 atttggcttctggactaaagttagccttagagaaagataagacagcccttgatgcagatc 365

                                                                       
Query: 322 gtctgaagaattatactggaccgcaacttcgagaactgctgaattggccacgcccactgc 381
           ||||  ||| ||| ||||| || || || ||  |||||||||| ||||||||||||||||
Sbjct: 366 gtctccagagttacactgggcctcagctccgccaactgctgaactggccacgcccactgc 425

                                                                       
Query: 382 caattgaggaggaaagagtccgccttcttcatgaggttggtctggagcttgaaagaagct 441
           ||||||||||||||||||| || |||||||||||||||||| |||| |||||||||||||
Sbjct: 426 caattgaggaggaaagagtacggcttcttcatgaggttggtatggaacttgaaagaagct 485

                                                                       
Query: 442 ttggcggtgaggctgctaatcttgtgaagtctgcaggaaactctgctgcatctctaattg 501
           |||| ||||| ||||| ||||| ||||||||||| ||||||||||||||  ||||||| |
Sbjct: 486 ttggaggtgaagctgcaaatctagtgaagtctgctggaaactctgctgctactctaatcg 545

                                                                       
Query: 502 aactgattacccgtcattttcctggctttcgagaccactcactttacaagggacaccagg 561
           |||| |||||||||||||||||||| ||||| || || ||||||||||| ||||||||||
Sbjct: 546 aacttattacccgtcattttcctggttttcgggatcattcactttacaaaggacaccagg 605

                     
Query: 562 ttttcctgta 571
           ||||| ||||
Sbjct: 606 ttttcttgta 615
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>dbj|AK103183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121K01, full
           insert sequence
          Length = 1424

 Score =  583 bits (294), Expect = e-163
 Identities = 487/550 (88%), Gaps = 1/550 (0%)
 Strand = Plus / Plus

                                                                       
Query: 22  cgccatggnaggccgtgcgcgcgtcggcggcctgggtggccagccgctcctcccacgtca 81
           |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 67  cgccatgg-aggccgtgcgcgcgtcggcggcgtgggtggccagccgctcctcccacgtca 125

                                                                       
Query: 82  aggttgacatgctagagattgagaaggccgtggacaaaattcaggggaatgttccaaaag 141
           |||| |||||| ||||| | |||||||  ||||||||||| || || |||||||||||||
Sbjct: 126 aggtcgacatgttagaggtcgagaaggtggtggacaaaatccaaggaaatgttccaaaag 185

                                                                       
Query: 142 tcgagtgggatttcgaaggaatccattactttgacaatggaccgctcactgtgcagtacc 201
           | || ||||| ||||||||||| || || |||||| |||| || |||||||| |||||||
Sbjct: 186 ttgaatgggacttcgaaggaattcactattttgacgatggccccctcactgtccagtacc 245

                                                                       
Query: 202 tcttcgtcttggatgcgctgaacttttgcttctggccagacaaggacttgacctatgaca 261
           |||||||| ||||||| |||||||| |||||||||||||| |||||  ||| ||||||| 
Sbjct: 246 tcttcgtcctggatgctctgaacttctgcttctggccagataaggatctgagctatgacc 305

                                                                       
Query: 262 atttggcttctggacttaagttagcattagagaaagataagtcagcacttgatgcagatc 321
           |||||||||||||||| |||||||| ||||||||||||||| |||| |||||||||||||
Sbjct: 306 atttggcttctggactaaagttagccttagagaaagataagacagcccttgatgcagatc 365

                                                                       
Query: 322 gtctgaagaattatactggaccgcaacttcgagaactgctgaattggccacgcccactgc 381
           ||||  ||| ||| ||||| || || || ||  |||||||||| ||||||||||||||||
Sbjct: 366 gtctccagagttacactgggcctcagctccgccaactgctgaactggccacgcccactgc 425

                                                                       
Query: 382 caattgaggaggaaagagtccgccttcttcatgaggttggtctggagcttgaaagaagct 441
           ||||||||||||||||||| || |||||||||||||||||| |||| |||||||||||||
Sbjct: 426 caattgaggaggaaagagtacggcttcttcatgaggttggtatggaacttgaaagaagct 485

                                                                       
Query: 442 ttggcggtgaggctgctaatcttgtgaagtctgcaggaaactctgctgcatctctaattg 501
           |||| ||||| ||||| ||||| ||||||||||| ||||||||||||||  ||||||| |
Sbjct: 486 ttggaggtgaagctgcaaatctagtgaagtctgctggaaactctgctgctactctaatcg 545

                                                                       
Query: 502 aactgattacccgtcattttcctggctttcgagaccactcactttacaagggacaccagg 561
           |||| |||||||||||||||||||| ||||| || || ||||||||||| ||||||||||
Sbjct: 546 aacttattacccgtcattttcctggttttcgggatcattcactttacaaaggacaccagg 605

                     
Query: 562 ttttcctgta 571
           ||||| ||||
Sbjct: 606 ttttcttgta 615
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>dbj|AK070635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058H18, full
           insert sequence
          Length = 1623

 Score =  480 bits (242), Expect = e-132
 Identities = 413/470 (87%)
 Strand = Plus / Plus

                                                                       
Query: 102 gagaaggccgtggacaaaattcaggggaatgttccaaaagtcgagtgggatttcgaagga 161
           |||||||  ||||||||||| || || |||||||||||||| || ||||| |||||||||
Sbjct: 432 gagaaggtggtggacaaaatccaaggaaatgttccaaaagttgaatgggacttcgaagga 491

                                                                       
Query: 162 atccattactttgacaatggaccgctcactgtgcagtacctcttcgtcttggatgcgctg 221
           || || || |||||| |||| || |||||||| ||||||||||||||| ||||||| |||
Sbjct: 492 attcactattttgacgatggccccctcactgtccagtacctcttcgtcctggatgctctg 551

                                                                       
Query: 222 aacttttgcttctggccagacaaggacttgacctatgacaatttggcttctggacttaag 281
           ||||| |||||||||||||| |||||  ||| ||||||| |||||||||||||||| |||
Sbjct: 552 aacttctgcttctggccagataaggatctgagctatgaccatttggcttctggactaaag 611

                                                                       
Query: 282 ttagcattagagaaagataagtcagcacttgatgcagatcgtctgaagaattatactgga 341
           ||||| ||||||||||||||| |||| |||||||||||||||||  ||| ||| ||||| 
Sbjct: 612 ttagccttagagaaagataagacagcccttgatgcagatcgtctccagagttacactggg 671

                                                                       
Query: 342 ccgcaacttcgagaactgctgaattggccacgcccactgccaattgaggaggaaagagtc 401
           || || || ||  |||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 672 cctcagctccgccaactgctgaactggccacgcccactgccaattgaggaggaaagagta 731

                                                                       
Query: 402 cgccttcttcatgaggttggtctggagcttgaaagaagctttggcggtgaggctgctaat 461
           || |||||||||||||||||| |||| ||||||||||||||||| ||||| ||||| |||
Sbjct: 732 cggcttcttcatgaggttggtatggaacttgaaagaagctttggaggtgaagctgcaaat 791

                                                                       
Query: 462 cttgtgaagtctgcaggaaactctgctgcatctctaattgaactgattacccgtcatttt 521
           || ||||||||||| ||||||||||||||  ||||||| ||||| |||||||||||||||
Sbjct: 792 ctagtgaagtctgctggaaactctgctgctactctaatcgaacttattacccgtcatttt 851

                                                             
Query: 522 cctggctttcgagaccactcactttacaagggacaccaggttttcctgta 571
           ||||| ||||| || || ||||||||||| ||||||||||||||| ||||
Sbjct: 852 cctggttttcgggatcattcactttacaaaggacaccaggttttcttgta 901
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  135 bits (68), Expect = 2e-28
 Identities = 101/112 (90%)
 Strand = Plus / Plus

                                                                            
Query: 415      aggttggtctggagcttgaaagaagctttggcggtgaggctgctaatcttgtgaagtctg 474
                |||||||| |||| ||||||||||||||||| ||||| ||||| ||||| ||||||||||
Sbjct: 23933811 aggttggtatggaacttgaaagaagctttggaggtgaagctgcaaatctagtgaagtctg 23933870

                                                                    
Query: 475      caggaaactctgctgcatctctaattgaactgattacccgtcattttcctgg 526
                | ||||||||||||||  ||||||| ||||| ||||||||||||||||||||
Sbjct: 23933871 ctggaaactctgctgctactctaatcgaacttattacccgtcattttcctgg 23933922



 Score =  133 bits (67), Expect = 7e-28
 Identities = 121/139 (87%)
 Strand = Plus / Plus

                                                                            
Query: 102      gagaaggccgtggacaaaattcaggggaatgttccaaaagtcgagtgggatttcgaagga 161
                |||||||  ||||||||||| || || |||||||||||||| || ||||| |||||||||
Sbjct: 23932411 gagaaggtggtggacaaaatccaaggaaatgttccaaaagttgaatgggacttcgaagga 23932470

                                                                            
Query: 162      atccattactttgacaatggaccgctcactgtgcagtacctcttcgtcttggatgcgctg 221
                || || || |||||| |||| || |||||||| ||||||||||||||| ||||||| |||
Sbjct: 23932471 attcactattttgacgatggccccctcactgtccagtacctcttcgtcctggatgctctg 23932530

                                   
Query: 222      aacttttgcttctggccag 240
                ||||| |||||||||||||
Sbjct: 23932531 aacttctgcttctggccag 23932549



 Score =  109 bits (55), Expect = 1e-20
 Identities = 68/71 (95%), Gaps = 1/71 (1%)
 Strand = Plus / Plus

                                                                            
Query: 22       cgccatggnaggccgtgcgcgcgtcggcggcctgggtggccagccgctcctcccacgtca 81
                |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 23931858 cgccatgg-aggccgtgcgcgcgtcggcggcgtgggtggccagccgctcctcccacgtca 23931916

                           
Query: 82       aggttgacatg 92
                |||| ||||||
Sbjct: 23931917 aggtcgacatg 23931927



 Score =  103 bits (52), Expect = 6e-19
 Identities = 61/64 (95%)
 Strand = Plus / Plus

                                                                            
Query: 355      aactgctgaattggccacgcccactgccaattgaggaggaaagagtccgccttcttcatg 414
                |||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 23933437 aactgctgaactggccacgcccactgccaattgaggaggaaagagtacggcttcttcatg 23933496

                    
Query: 415      aggt 418
                ||||
Sbjct: 23933497 aggt 23933500



 Score =  103 bits (52), Expect = 6e-19
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                            
Query: 254      ctatgacaatttggcttctggacttaagttagcattagagaaagataagtcagcacttga 313
                ||||||| |||||||||||||||| |||||||| ||||||||||||||| |||| |||||
Sbjct: 23932901 ctatgaccatttggcttctggactaaagttagccttagagaaagataagacagcccttga 23932960

                            
Query: 314      tgcagatcgtct 325
                ||||||||||||
Sbjct: 23932961 tgcagatcgtct 23932972



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 540      tcactttacaagggacaccaggttttcctgta 571
                ||||||||||| ||||||||||||||| ||||
Sbjct: 23934987 tcactttacaaaggacaccaggttttcttgta 23935018
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>dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0005G07
          Length = 142850

 Score =  135 bits (68), Expect = 2e-28
 Identities = 101/112 (90%)
 Strand = Plus / Plus

                                                                         
Query: 415   aggttggtctggagcttgaaagaagctttggcggtgaggctgctaatcttgtgaagtctg 474
             |||||||| |||| ||||||||||||||||| ||||| ||||| ||||| ||||||||||
Sbjct: 88738 aggttggtatggaacttgaaagaagctttggaggtgaagctgcaaatctagtgaagtctg 88797

                                                                 
Query: 475   caggaaactctgctgcatctctaattgaactgattacccgtcattttcctgg 526
             | ||||||||||||||  ||||||| ||||| ||||||||||||||||||||
Sbjct: 88798 ctggaaactctgctgctactctaatcgaacttattacccgtcattttcctgg 88849



 Score =  133 bits (67), Expect = 7e-28
 Identities = 121/139 (87%)
 Strand = Plus / Plus

                                                                         
Query: 102   gagaaggccgtggacaaaattcaggggaatgttccaaaagtcgagtgggatttcgaagga 161
             |||||||  ||||||||||| || || |||||||||||||| || ||||| |||||||||
Sbjct: 87338 gagaaggtggtggacaaaatccaaggaaatgttccaaaagttgaatgggacttcgaagga 87397

                                                                         
Query: 162   atccattactttgacaatggaccgctcactgtgcagtacctcttcgtcttggatgcgctg 221
             || || || |||||| |||| || |||||||| ||||||||||||||| ||||||| |||
Sbjct: 87398 attcactattttgacgatggccccctcactgtccagtacctcttcgtcctggatgctctg 87457

                                
Query: 222   aacttttgcttctggccag 240
             ||||| |||||||||||||
Sbjct: 87458 aacttctgcttctggccag 87476



 Score =  109 bits (55), Expect = 1e-20
 Identities = 68/71 (95%), Gaps = 1/71 (1%)
 Strand = Plus / Plus

                                                                         
Query: 22    cgccatggnaggccgtgcgcgcgtcggcggcctgggtggccagccgctcctcccacgtca 81
             |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 86785 cgccatgg-aggccgtgcgcgcgtcggcggcgtgggtggccagccgctcctcccacgtca 86843

                        
Query: 82    aggttgacatg 92
             |||| ||||||
Sbjct: 86844 aggtcgacatg 86854



 Score =  103 bits (52), Expect = 6e-19
 Identities = 61/64 (95%)
 Strand = Plus / Plus

                                                                         
Query: 355   aactgctgaattggccacgcccactgccaattgaggaggaaagagtccgccttcttcatg 414
             |||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 88364 aactgctgaactggccacgcccactgccaattgaggaggaaagagtacggcttcttcatg 88423

                 
Query: 415   aggt 418
             ||||
Sbjct: 88424 aggt 88427



 Score =  103 bits (52), Expect = 6e-19
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                         
Query: 254   ctatgacaatttggcttctggacttaagttagcattagagaaagataagtcagcacttga 313
             ||||||| |||||||||||||||| |||||||| ||||||||||||||| |||| |||||
Sbjct: 87828 ctatgaccatttggcttctggactaaagttagccttagagaaagataagacagcccttga 87887

                         
Query: 314   tgcagatcgtct 325
             ||||||||||||
Sbjct: 87888 tgcagatcgtct 87899



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 540   tcactttacaagggacaccaggttttcctgta 571
             ||||||||||| ||||||||||||||| ||||
Sbjct: 89914 tcactttacaaaggacaccaggttttcttgta 89945
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>gb|AY017807.1| Oryza sativa microsatellite MRG0132 containing (AG)X12, genomic
           sequence
          Length = 224

 Score =  109 bits (55), Expect = 1e-20
 Identities = 68/71 (95%), Gaps = 1/71 (1%)
 Strand = Plus / Minus

                                                                       
Query: 22  cgccatggnaggccgtgcgcgcgtcggcggcctgggtggccagccgctcctcccacgtca 81
           |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 203 cgccatgg-aggccgtgcgcgcgtcggcggcgtgggtggccagccgctcctcccacgtca 145

                      
Query: 82  aggttgacatg 92
           |||| ||||||
Sbjct: 144 aggtcgacatg 134
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>emb|CR962127.1| Medicago truncatula chromosome 5 clone mth2-181n9, COMPLETE SEQUENCE
          Length = 119528

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 89/106 (83%)
 Strand = Plus / Minus

                                                                         
Query: 133   ttccaaaagtcgagtgggatttcgaaggaatccattactttgacaatggaccgctcactg 192
             |||| ||||| || |||||||| ||||| || ||||| ||||| ||||| || |||||||
Sbjct: 46849 ttccgaaagttgaatgggattttgaagggattcattattttgataatggtcctctcactg 46790

                                                           
Query: 193   tgcagtacctcttcgtcttggatgcgctgaacttttgcttctggcc 238
             | |||||| | || || ||||||||  |||||||||||||||||||
Sbjct: 46789 ttcagtacttgtttgttttggatgctttgaacttttgcttctggcc 46744
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>ref|XM_476228.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 927

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 33  gccgtgcgcgcgtcggcggcct 54
           ||||||||||||||||||||||
Sbjct: 785 gccgtgcgcgcgtcggcggcct 764
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>gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0042F15, complete sequence
          Length = 162959

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 33    gccgtgcgcgcgtcggcggcct 54
             ||||||||||||||||||||||
Sbjct: 90372 gccgtgcgcgcgtcggcggcct 90393
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 33      gccgtgcgcgcgtcggcggcct 54
               ||||||||||||||||||||||
Sbjct: 7905597 gccgtgcgcgcgtcggcggcct 7905618
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>tpe|BN000602.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx73 gene for
            class III peroxidase 73 precursor, exons 1-2
          Length = 1433

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 33   gccgtgcgcgcgtcggcggcct 54
            ||||||||||||||||||||||
Sbjct: 1291 gccgtgcgcgcgtcggcggcct 1270
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>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 47     ggcggcctgggtggccagccgctcc 71
              ||||||||||| |||||||||||||
Sbjct: 339963 ggcggcctgggcggccagccgctcc 339939
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>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14
          Length = 255260

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 47     ggcggcctgggtggccagccgctcc 71
              ||||||||||| |||||||||||||
Sbjct: 132356 ggcggcctgggcggccagccgctcc 132332
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>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12
          Length = 257701

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 47     ggcggcctgggtggccagccgctcc 71
              ||||||||||| |||||||||||||
Sbjct: 173147 ggcggcctgggcggccagccgctcc 173123
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>gb|AF312688.1|AF312688 Mycobacterium celatum plasmid pCLP, complete sequence
          Length = 22688

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 40   gcgcgtcggcggcctgggtggccag 64
            |||||||||||||||||| ||||||
Sbjct: 9417 gcgcgtcggcggcctggggggccag 9441
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>emb|CT010462.5| Mouse DNA sequence from clone RP23-321N21 on chromosome 12, complete
              sequence
          Length = 204912

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 425    ggagcttgaaagaagctttgg 445
              |||||||||||||||||||||
Sbjct: 105036 ggagcttgaaagaagctttgg 105016
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>emb|AL928658.6| Mouse DNA sequence from clone RP23-238A18 on chromosome 2, complete
             sequence
          Length = 220679

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 382   caattgaggaggaaagagtcc 402
             |||||||||||||||||||||
Sbjct: 56438 caattgaggaggaaagagtcc 56418
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>ref|XM_469687.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2131

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 100  ttgagaaggccgtggacaaa 119
            ||||||||||||||||||||
Sbjct: 1362 ttgagaaggccgtggacaaa 1381
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>gb|AC139513.10| Mus musculus chromosome 15, clone RP23-151N6, complete sequence
          Length = 238980

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 549   aagggacaccaggttttcct 568
             ||||||||||||||||||||
Sbjct: 52265 aagggacaccaggttttcct 52246
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>gb|AC117784.13| Mus musculus chromosome 15, clone RP24-545F24, complete sequence
          Length = 190734

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 549    aagggacaccaggttttcct 568
              ||||||||||||||||||||
Sbjct: 174278 aagggacaccaggttttcct 174259
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>gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome 13, complete sequence
          Length = 235930

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    gctgaacttttgcttctggc 237
              ||||||||||||||||||||
Sbjct: 208658 gctgaacttttgcttctggc 208677
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>gb|AC107758.19| Mus musculus chromosome 5, clone RP23-206B16, complete sequence
          Length = 188575

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   tcttgtgaagtctgcaggaa 480
             ||||||||||||||||||||
Sbjct: 77129 tcttgtgaagtctgcaggaa 77110
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 100      ttgagaaggccgtggacaaa 119
                ||||||||||||||||||||
Sbjct: 30211493 ttgagaaggccgtggacaaa 30211512
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>gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic sequence, complete
             sequence
          Length = 163972

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   ttgagaaggccgtggacaaa 119
             ||||||||||||||||||||
Sbjct: 12402 ttgagaaggccgtggacaaa 12383
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>gb|AC125484.4| Mus musculus BAC clone RP23-127L14 from chromosome 13, complete sequence
          Length = 207318

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    gctgaacttttgcttctggc 237
              ||||||||||||||||||||
Sbjct: 199090 gctgaacttttgcttctggc 199071
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>gb|AC027119.5| Homo sapiens chromosome 3 clone RP11-113L10 map 3p, complete sequence
          Length = 175590

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   tctggccagacaaggacttg 251
             ||||||||||||||||||||
Sbjct: 50840 tctggccagacaaggacttg 50821
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>gb|AC158775.8| Mus musculus chromosome 19, clone RP23-53N8, complete sequence
          Length = 177315

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   tgacctatgacaatttggct 269
             ||||||||||||||||||||
Sbjct: 31765 tgacctatgacaatttggct 31784
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>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    gggtggccagccgctcctcc 74
             ||||||||||||||||||||
Sbjct: 63720 gggtggccagccgctcctcc 63701
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>gb|AC160555.4| Mus musculus chromosome 5, clone RP23-387L12, complete sequence
          Length = 196977

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 461    tcttgtgaagtctgcaggaa 480
              ||||||||||||||||||||
Sbjct: 164690 tcttgtgaagtctgcaggaa 164671
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>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence,
            complete sequence
          Length = 130359

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 100  ttgagaaggccgtggacaaa 119
            ||||||||||||||||||||
Sbjct: 3173 ttgagaaggccgtggacaaa 3192
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 100      ttgagaaggccgtggacaaa 119
                ||||||||||||||||||||
Sbjct: 30302915 ttgagaaggccgtggacaaa 30302934
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>gb|AC154558.2| Mus musculus BAC clone RP23-240G18 from chromosome 13, complete
             sequence
          Length = 186758

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   tgaacttttgcttctggcca 239
             ||||||||||||||||||||
Sbjct: 28165 tgaacttttgcttctggcca 28146
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>gb|AC102755.18| Mus musculus chromosome 19, clone RP24-143E6, complete sequence
          Length = 153856

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   tgacctatgacaatttggct 269
             ||||||||||||||||||||
Sbjct: 25269 tgacctatgacaatttggct 25250
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>gb|DQ338437.1| Metarhizium anisopliae adhesin protein Mad1 (Mad1) mRNA, complete cds
          Length = 2751

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 227  ttgcttctggccagacaaggactt 250
            ||||||||| ||||||||||||||
Sbjct: 1792 ttgcttctgcccagacaaggactt 1815
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>gb|AC174082.3| Mus musculus BAC clone RP23-395H10 from chromosome 13, complete sequence
          Length = 208596

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    tgaacttttgcttctggcca 239
              ||||||||||||||||||||
Sbjct: 132852 tgaacttttgcttctggcca 132833


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,618,109
Number of Sequences: 3902068
Number of extensions: 4618109
Number of successful extensions: 84590
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84403
Number of HSP's gapped (non-prelim): 187
length of query: 584
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 561
effective length of database: 17,143,297,704
effective search space: 9617390011944
effective search space used: 9617390011944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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