ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27c11 |
|---|---|
| Clone Library Name | barley_pub |
>SRPR_HUMAN (P08240) Signal recognition particle receptor alpha subunit| (SR-alpha) (Docking protein alpha) (DP-alpha) Length = 638 Score = 75.1 bits (183), Expect = 8e-14 Identities = 42/98 (42%), Positives = 58/98 (59%) Frame = +2 Query: 62 MLEELLIFTRGGLILWSSCRALGGAALLKGSPIDALIRSCLLEERSGDAGFTQDAYALKW 241 ML+ IF++GGL+LW G + P++ALIRS LL+ER G+ FT +A LK+ Sbjct: 1 MLDFFTIFSKGGLVLW----CFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKY 56 Query: 242 TFNNDLGLVFVAVYQRMLHLLYVDDLLAAVRRDFSQIY 355 +N LVFV +Q++L L YVD L+ V R F Y Sbjct: 57 KLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKY 94
>SRPR_CANFA (P06625) Signal recognition particle receptor alpha subunit| (SR-alpha) (Docking protein alpha) (DP-alpha) Length = 638 Score = 75.1 bits (183), Expect = 8e-14 Identities = 42/98 (42%), Positives = 58/98 (59%) Frame = +2 Query: 62 MLEELLIFTRGGLILWSSCRALGGAALLKGSPIDALIRSCLLEERSGDAGFTQDAYALKW 241 ML+ IF++GGL+LW G + P++ALIRS LL+ER G+ FT +A LK+ Sbjct: 1 MLDFFTIFSKGGLVLW----CFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKY 56 Query: 242 TFNNDLGLVFVAVYQRMLHLLYVDDLLAAVRRDFSQIY 355 +N LVFV +Q++L L YVD L+ V R F Y Sbjct: 57 KLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKY 94
>SRPR_MOUSE (Q9DBG7) Signal recognition particle receptor alpha subunit| (SR-alpha) (Docking protein alpha) (DP-alpha) Length = 636 Score = 75.1 bits (183), Expect = 8e-14 Identities = 42/98 (42%), Positives = 58/98 (59%) Frame = +2 Query: 62 MLEELLIFTRGGLILWSSCRALGGAALLKGSPIDALIRSCLLEERSGDAGFTQDAYALKW 241 ML+ IF++GGL+LW G + P++ALIRS LL+ER G+ FT +A LK+ Sbjct: 1 MLDFFTIFSKGGLVLW----CFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKY 56 Query: 242 TFNNDLGLVFVAVYQRMLHLLYVDDLLAAVRRDFSQIY 355 +N LVFV +Q++L L YVD L+ V R F Y Sbjct: 57 KLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKY 94
>SRPR_DROME (Q9U5L1) Signal recognition particle receptor alpha subunit homolog| (SR-alpha) (Docking protein alpha) (DP-alpha) (GTP-binding protein) Length = 614 Score = 74.7 bits (182), Expect = 1e-13 Identities = 46/130 (35%), Positives = 82/130 (63%), Gaps = 2/130 (1%) Frame = +2 Query: 62 MLEELLIFTRGGLILWSSCRALGGAALLKGSPIDALIRSCLLEERSGDAGF-TQDAYALK 238 ML+ ++IFT+GG++LW S A G + S I++LIR +LEER+ +A + +D A++ Sbjct: 1 MLDFVVIFTKGGVVLWHS-NASGNSF---ASCINSLIRGVILEERNTEAKYYEEDHLAVQ 56 Query: 239 WTFNNDLGLVFVAVYQRMLHLLYVDDLLAAVRRDFSQIYNPNRISYDHLFTDKFRQ-LHL 415 + +N+L LV+ A++Q+++ L Y+D LA ++ F + Y R+ D+ F ++R+ L Sbjct: 57 FKLDNELDLVYAAIFQKVIKLNYLDGFLADMQAAFKEKYGDIRLGDDYDFDREYRRVLSA 116 Query: 416 EAEARAEAMK 445 EA A+ +K Sbjct: 117 AEEASAKQVK 126
>PUNC_HUMAN (Q8IVU1) Putative neuronal cell adhesion molecule precursor| Length = 814 Score = 33.5 bits (75), Expect = 0.28 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 8/60 (13%) Frame = -2 Query: 226 GVLGESGVARALLEQAGADE-RVDGGALEQRRPAQGPAGRPQDQ-------PAPREDQQL 71 G+L +G R Q G DE RVD LEQ P AG+P + PAP E+ QL Sbjct: 690 GILALNGARRGQRGQLGRDEKRVDMKELEQLFPPASAAGQPDPRPTQDPAAPAPCEETQL 749
>NAB2_YEAST (P32505) Nuclear polyadenylated RNA-binding protein NAB2| Length = 525 Score = 31.6 bits (70), Expect = 1.0 Identities = 17/58 (29%), Positives = 29/58 (50%) Frame = -2 Query: 220 LGESGVARALLEQAGADERVDGGALEQRRPAQGPAGRPQDQPAPREDQQLLQHRRRRP 47 LG+S +A+ +Q + Q++P Q P +PQ QP + QQ Q +++P Sbjct: 99 LGQSDIAQQQQQQQQQQQPDIAQQQPQQQPQQQPQQQPQQQPQQQPQQQPQQQPQQQP 156
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 31.2 bits (69), Expect = 1.4 Identities = 19/51 (37%), Positives = 23/51 (45%) Frame = -2 Query: 187 EQAGADERVDGGALEQRRPAQGPAGRPQDQPAPREDQQLLQHRRRRPWMGS 35 E G D GG +RR GP P P R D + +HRRR+ GS Sbjct: 998 EAEGPDGGGGGGGERRRRHRHGPP--PAYDPDARRDDRERRHRRRKDTQGS 1046
>GLI3_CHICK (P55879) Zinc finger protein GLI3 (Fragment)| Length = 663 Score = 31.2 bits (69), Expect = 1.4 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 5/59 (8%) Frame = -3 Query: 216 VNPASPERSSSRQERMSASMGE--PL---SSAAPPRARQDDHRISPPRVKISSSSNIVA 55 +NP + ++ ++Q +S++ G PL S PPR ++PP +ISS+SN ++ Sbjct: 109 INPVTYQQILTQQRGLSSAFGHTPPLIQPSPTFPPRQHMAVISVNPPPAQISSNSNCIS 167
>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21| Length = 2189 Score = 30.0 bits (66), Expect = 3.1 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = -2 Query: 202 ARALLEQAGADERVDGGALEQRRPAQGPAGRPQDQPAPREDQQLLQ 65 A+A QA A + G Q +P Q P +PQ QP + QQ Q Sbjct: 2064 AQAQQAQAQAQAQSHGQMQPQTQPQQQPQPQPQSQPQAHQPQQASQ 2109
>SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (CTD-binding| SR-like protein RA4) Length = 1147 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -2 Query: 154 GALEQRRPAQGPAGRPQDQPAPREDQQLLQHRRRRP 47 G E R Q P +PQ QP P+ QQ Q ++++P Sbjct: 932 GGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQQQQP 967
>EXT1_CRIGR (Q9JK82) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225) (Heparan sulfate| copolymerase) (Multiple exostoses protein 1 homolog) Length = 746 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +2 Query: 227 YALKWTFNNDLGLVFVAVYQRMLHLLYVDDLLAAVRRDFSQIYN 358 Y KWT + + L A+Y + H LY L A+++ Q+ N Sbjct: 608 YTSKWTNDYSMVLTGAAIYHKYYHYLYTHYLPASLKNMVDQLAN 651
>EXT1B_BRARE (Q5IGR7) Exostosin-1b (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase 1b) (Multiple exostoses protein 1 homolog b) Length = 741 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +2 Query: 227 YALKWTFNNDLGLVFVAVYQRMLHLLYVDDLLAAVRRDFSQIYN 358 Y KWT + + L A+Y R H LY L ++++ Q+ N Sbjct: 603 YTSKWTNDYSMVLTGAAIYHRYYHFLYTHFLPSSLKSMVDQLAN 646
>RS11_OCEIH (P59373) 30S ribosomal protein S11| Length = 129 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = +2 Query: 5 RQXRKDTESIAPHPRAAATMLEELLIFTRGGLILWSSCRALGGAALLKGSPIDA 166 R+ +K+ ES H R+ + TRG I WSS ALG K +P A Sbjct: 10 RRVKKNIESGIAHIRSTFNNTIVTITDTRGNAIGWSSAGALGFKGSKKSTPFAA 63
>FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chorion membrane| protein) Length = 2038 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/51 (37%), Positives = 23/51 (45%) Frame = -3 Query: 216 VNPASPERSSSRQERMSASMGEPLSSAAPPRARQDDHRISPPRVKISSSSN 64 V PA+P SSS S+S SS+ + D PPR K S SN Sbjct: 1072 VQPANPVSSSSSSSDSSSSSSSDSSSSDSSDSEAGDGDERPPRKKKSRDSN 1122
>R4RL1_HUMAN (Q86UN2) Reticulon-4 receptor-like 1 precursor (Nogo-66 receptor| homolog 2) (Nogo-66 receptor-related protein 3) (NgR3) (Nogo receptor-like 2) Length = 441 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Frame = +2 Query: 113 SCRALGGAALLKGSPIDALIRSCLLEERSG--DAGFTQDAYALKWTFNNDLGLVFVAVYQ 286 SC+A AA+ +G P+D+ R L R G G A W ++N++ + + ++ Sbjct: 39 SCQAHNFAAIPEGIPVDSE-RVFLQNNRIGLLQPGHFSPAMVTLWIYSNNITYIHPSTFE 97 Query: 287 RMLHLLYVD 313 +HL +D Sbjct: 98 GFVHLEELD 106
>EXT1_MOUSE (P97464) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Multiple exostoses protein 1 homolog) Length = 746 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +2 Query: 227 YALKWTFNNDLGLVFVAVYQRMLHLLYVDDLLAAVRRDFSQIYN 358 Y KWT + + L A+Y + H LY L A+++ Q+ N Sbjct: 608 YTSKWTNDYSMVLTGAAIYHKYYHYLYSHYLPASLKNMVDQLAN 651
>EXT1_HUMAN (Q16394) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Putative tumor suppressor protein EXT1) (Multiple exostoses protein Length = 746 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +2 Query: 227 YALKWTFNNDLGLVFVAVYQRMLHLLYVDDLLAAVRRDFSQIYN 358 Y KWT + + L A+Y + H LY L A+++ Q+ N Sbjct: 608 YTSKWTNDYSMVLTGAAIYHKYYHYLYSHYLPASLKNMVDQLAN 651
>RS11_STRP1 (Q9A1V0) 30S ribosomal protein S11| Length = 127 Score = 29.3 bits (64), Expect = 5.2 Identities = 17/54 (31%), Positives = 23/54 (42%) Frame = +2 Query: 5 RQXRKDTESIAPHPRAAATMLEELLIFTRGGLILWSSCRALGGAALLKGSPIDA 166 R+ +KD ES H A ++ G + WSS ALG K +P A Sbjct: 8 RRVKKDIESGVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSRKSTPFAA 61
>MURD_MYCBO (Q7VEP7) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 486 Score = 29.3 bits (64), Expect = 5.2 Identities = 19/48 (39%), Positives = 28/48 (58%) Frame = +2 Query: 134 AALLKGSPIDALIRSCLLEERSGDAGFTQDAYALKWTFNNDLGLVFVA 277 AALL GSP + L E +G+ G +DA+ + F++DL L+ VA Sbjct: 225 AALLDGSPAQVRVGFRLGEPAAGELG-VRDAHLVDRAFSDDLTLLPVA 271
>CLPB_BIFLO (Q8G4X4) Chaperone clpB| Length = 889 Score = 29.3 bits (64), Expect = 5.2 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = -2 Query: 214 ESGVARALLEQAGADERVDGGALEQRRPAQGPAGRPQDQPAPREDQQL 71 E+GVAR+L+E AG D + G A+ A P+ P+ +QL Sbjct: 41 ENGVARSLIEAAGGDPQAIGAAVRNALVAL-PSASGSSTSQPQASRQL 87
>VMDL3_HUMAN (Q8N1M1) Bestrophin-4 (Vitelliform macular dystrophy 2-like protein| 3) Length = 668 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -3 Query: 213 NPASPERSSSRQERMSASMGEPLSSAAPPRARQDDHRISPPR 88 +P+SP R S R++ +SM P +P R D +PPR Sbjct: 404 HPSSPRRRSYRRQTSDSSMFLPRDDLSPARDLLDVPSRNPPR 445
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2158 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 9/59 (15%) Frame = -3 Query: 213 NPASPERS----SSRQERMSASMGEPLSSAAPPRARQDDH-----RISPPRVKISSSSN 64 NPA +++ SSRQ ++A G P PP+A Q R PPR + SS+ Sbjct: 1468 NPAGIQQALAQLSSRQGNVTAPGGHPRPKPGPPQAPQGSSPRPPTRYDPPRASSAISSD 1526
>RS11_BACSU (P04969) 30S ribosomal protein S11 (BS11)| Length = 131 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/54 (33%), Positives = 24/54 (44%) Frame = +2 Query: 5 RQXRKDTESIAPHPRAAATMLEELLIFTRGGLILWSSCRALGGAALLKGSPIDA 166 R+ +K+ ES H R+ + T G I WSS ALG K +P A Sbjct: 12 RRVKKNIESGIAHIRSTFNNTIVTITDTHGNAISWSSAGALGFRGSRKSTPFAA 65
>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)| Length = 705 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = -2 Query: 217 GESGVARALLEQAGADERVDGGALEQRRPA-QGPAGRPQDQPAPREDQQL 71 G +G R QAG R +Q RP+ GPAGRP+ Q A + Q + Sbjct: 596 GPAGPTRQA-SQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDV 644
>RS11_STRR6 (P66360) 30S ribosomal protein S11| Length = 127 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/58 (31%), Positives = 25/58 (43%) Frame = +2 Query: 5 RQXRKDTESIAPHPRAAATMLEELLIFTRGGLILWSSCRALGGAALLKGSPIDALIRS 178 R+ +K+ ES H A ++ G I WSS ALG K +P A + S Sbjct: 8 RRVKKNIESGIAHIHATFNNTIVMITDVHGNAIAWSSAGALGFKGSRKSTPFAAQMAS 65
>RS11_STRPN (P66359) 30S ribosomal protein S11| Length = 127 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/58 (31%), Positives = 25/58 (43%) Frame = +2 Query: 5 RQXRKDTESIAPHPRAAATMLEELLIFTRGGLILWSSCRALGGAALLKGSPIDALIRS 178 R+ +K+ ES H A ++ G I WSS ALG K +P A + S Sbjct: 8 RRVKKNIESGIAHIHATFNNTIVMITDVHGNAIAWSSAGALGFKGSRKSTPFAAQMAS 65
>BACE_BACAM (Q8KWS7) Putative bacilysin exporter bacE| Length = 393 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = +2 Query: 161 DALIRSCLLEERSGDAGFTQDAYALKWTFNNDLGLVFVAV 280 D I + LL G GF A KW FNN+ GL++ V Sbjct: 241 DGEIGNFLLTFCIGFGGFIGAALVSKWGFNNNKGLMYFTV 280
>TRPC_ECOLI (P00909) Tryptophan biosynthesis protein trpCF [Includes:| Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS); N-(5'-phospho-ribosyl)anthranilate isomerase (EC 5.3.1.24) (PRAI)] Length = 452 Score = 28.5 bits (62), Expect = 8.9 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 7/126 (5%) Frame = +2 Query: 65 LEELLIFTRGGLILWSSCRALGGAALLKGSPIDALIRSCLLEE-------RSGDAGFTQD 223 + EL F G LI G+AL+ + A +R LL E R DA D Sbjct: 223 VRELSHFANGFLI---------GSALMAHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYD 273 Query: 224 AYALKWTFNNDLGLVFVAVYQRMLHLLYVDDLLAAVRRDFSQIYNPNRISYDHLFTDKFR 403 A A+ GL+FVA R +++ +++AA + ++ + I+ DK + Sbjct: 274 AGAIYG------GLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIAD---VVDKAK 324 Query: 404 QLHLEA 421 L L A Sbjct: 325 VLSLAA 330
>CLPB_OCEIH (Q8EU05) Chaperone clpB| Length = 809 Score = 28.5 bits (62), Expect = 8.9 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Frame = -2 Query: 220 LGESGVARALLEQAGADE----RVDGGALEQRRPAQGPAGRPQDQPAPREDQQLLQHRRR 53 +G++ +ARAL E ADE R+D +R G P E QL + RR Sbjct: 552 VGKTELARALAEVMFADEDAMIRIDMSEYMERHATSRLVGSPPGYVGYDEGGQLTEKVRR 611 Query: 52 RPW 44 +P+ Sbjct: 612 KPY 614
>SSBW_PSEPU (Q8VMM4) Single-stranded DNA-binding protein (SSB)| (Helix-destabilizing protein) Length = 180 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -2 Query: 187 EQAGADERVDGGALEQRRPAQGPAGRPQDQPAPREDQQ 74 +Q G D GG+ +Q R RPQ PAP++ Q Sbjct: 118 QQQGGDPYNQGGSNQQPRQQAPRQQRPQQPPAPQQPAQ 155
>LTBP4_MOUSE (Q8K4G1) Latent transforming growth factor beta-binding protein 4| precursor (LTBP-4) Length = 1666 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/43 (37%), Positives = 19/43 (44%) Frame = -2 Query: 175 ADERVDGGALEQRRPAQGPAGRPQDQPAPREDQQLLQHRRRRP 47 A R G L RRP P PQ +P PR + + R RP Sbjct: 495 ATPRPPTGFLPTRRPEPRPDPGPQPEPRPRPEPRPRPESRPRP 537
>TIF1G_MOUSE (Q99PP7) Transcription intermediary factor 1-gamma (TIF1-gamma)| (Tripartite motif protein 33) Length = 1142 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/47 (34%), Positives = 17/47 (36%) Frame = -2 Query: 229 VGVLGESGVARALLEQAGADERVDGGALEQRRPAQGPAGRPQDQPAP 89 V S A + A V GGA PA PA P PAP Sbjct: 67 VAAASSSSAPAASVPAASVGSAVPGGAASTPAPAAAPAPAPAPAPAP 113
>RGL2_CANFA (Q5TJE5) Ral guanine nucleotide dissociation stimulator-like 2| (RAS-associated protein RAB2L) Length = 780 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = -3 Query: 243 VHLSA*ASWVNPASPERSSSRQERMSASMGEPLSSAAPPRARQDDHR 103 +H A S ++P + SR R SAS G PLS A ++ ++R Sbjct: 595 LHSLADPSHLSPPASSPRPSRGHRRSASCGSPLSGGAEGASKGTEYR 641
>NRG2_HUMAN (O14511) Pro-neuregulin-2, membrane-bound isoform precursor| (Pro-NRG2) [Contains: Neuregulin-2 (NRG-2) (Neural- and thymus-derived activator for ERBB kinases) (NTAK) (Divergent of neuregulin-1) (DON-1)] Length = 850 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = -2 Query: 184 QAGADERVDGGALEQRRPAQGPAGRPQDQPAPR 86 ++G+ R RPA P RPQ QP PR Sbjct: 42 ESGSSSRSSSNNSSISRPAAPPEPRPQQQPQPR 74 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,588,300 Number of Sequences: 219361 Number of extensions: 758255 Number of successful extensions: 4042 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 3768 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3997 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
