>PURK_ECOLI (P09029) Phosphoribosylaminoimidazole carboxylase ATPase subunit|
           (EC 4.1.1.21) (AIR carboxylase) (AIRC)
          Length = 355

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +3

Query: 207 LNQDGLHGPSTTYPDSTTKDN---EDMKSVLSLDDGRWSAPAEECTSTPSASLVGELS 371
           L+QDG+   S  +P +  +     E+M S +  + G     A EC  TP   L+ EL+
Sbjct: 183 LHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELA 240

>Y3524_METJA (Q60283) Hypothetical protein MJECL24|
          Length = 259

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 12/29 (41%), Positives = 23/29 (79%)
 Frame = -3

Query: 268 LSFVVLSGYVVLGPCRPSWFNIAGTRLVI 182
           ++ +V S Y+++ PC PS+F+IAG +L++
Sbjct: 139 INSLVASDYIII-PCEPSYFSIAGVQLML 166

>KCNB2_RABIT (Q95L11) Potassium voltage-gated channel subfamily B member 2|
           (Voltage-gated potassium channel subunit Kv2.2)
          Length = 911

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
 Frame = +3

Query: 162 LEFTQSDMTSLVPAMLNQDGLHGP-----STTYPDSTTKDNEDMKS---VLSLDDGRWSA 317
           LE++  D+T  + A  +Q GLHGP     +T  P S+ K +  +KS    ++  + R SA
Sbjct: 667 LEYSPIDITVNLDAGSSQCGLHGPLQSDSATDSPKSSLKGSNPLKSRSLKVNFKENRGSA 726

Query: 318 P 320
           P
Sbjct: 727 P 727

>HXK1_ARATH (Q42525) Hexokinase-1 (EC 2.7.1.1)|
          Length = 496

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 201 AMLNQDGLHGPSTTYPDSTTKDNEDMKSVLSLDDGRWS--APAEECTSTPSASLVGE 365
           A L+  G++G        TTKD E  KSV+++D G +       EC  +    L+G+
Sbjct: 407 ARLSAAGIYGILKKLGRDTTKDEEVQKSVIAMDGGLFEHYTQFSECMESSLKELLGD 463

>PCGF2_MOUSE (P23798) Polycomb group RING finger protein 2 (DNA-binding protein|
           Mel-18) (RING finger protein 110) (Zinc finger protein
           144) (Zfp-144)
          Length = 342

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/80 (25%), Positives = 29/80 (36%)
 Frame = +3

Query: 141 KVQYPCNLEFTQSDMTSLVPAMLNQDGLHGPSTTYPDSTTKDNEDMKSVLSLDDGRWSAP 320
           K   P  L  T S + S           HGP  T+P S T  +    +  + + G     
Sbjct: 262 KAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSPTPPSTAAGTTTATNGG----- 316

Query: 321 AEECTSTPSASLVGELSQLN 380
              C  TPS++  G    +N
Sbjct: 317 TSNCLQTPSSTSRGRKMTVN 336

>SYS_GLUOX (Q5FQ48) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 420

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = +3

Query: 165 EFTQSDMTSLVPAMLNQDGLHGPSTTYPDSTTKDNEDMKSVLSLDDGRWSAPAEECTSTP 344
           EF  S+ +  VP ++N D ++G      D   K  ED       +DGRW  P  E   T 
Sbjct: 187 EFGYSETS--VPLLVNDDAMYGT-----DKLPKFAEDS---FRTEDGRWLIPTAEVPLT- 235

Query: 345 SASLVGEL 368
            AS++GE+
Sbjct: 236 -ASVMGEI 242

>ATG17_NEUCR (Q872W1) Autophagy-related protein 17|
          Length = 568

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 129 VAAVKVQYPCNLEFTQSDMTSLVPAMLNQDGLHGPSTTYPDSTTKDNEDMKSVLS 293
           ++A K  +  +L    +D+ +L  AM     L  P+TT PD    D   + ++LS
Sbjct: 206 LSAAKTSFDGDLLRFDTDLRTLTDAMAAAASLANPTTTTPDGYPPDQRSIPNLLS 260

>MSP1_SCHPO (P87320) Protein msp1, mitochondrial precursor|
          Length = 903

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 319 GADHRPSS-RDRTDFISSLSFVVLSGYVVLGPCRPSWFNIAGTRLVISL*VNSRL 158
           G  +RPS  R R   +S   F     Y +LGP  P+ FN A T    S    SRL
Sbjct: 25  GLVYRPSQIRRRVSLLSLSGFHPYRAYSILGPKTPTAFNSANTVRFFSFSSISRL 79

>PCGF2_HUMAN (P35227) Polycomb group RING finger protein 2 (DNA-binding protein|
           Mel-18) (RING finger protein 110) (Zinc finger protein
           144)
          Length = 344

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/80 (25%), Positives = 30/80 (37%)
 Frame = +3

Query: 141 KVQYPCNLEFTQSDMTSLVPAMLNQDGLHGPSTTYPDSTTKDNEDMKSVLSLDDGRWSAP 320
           K   P  L  T S + S           HGP  T+P S T  +    +  + + G     
Sbjct: 262 KAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSPTPPSTASGATTAANGG----- 316

Query: 321 AEECTSTPSASLVGELSQLN 380
           +  C  TPS++  G    +N
Sbjct: 317 SLNCLQTPSSTSRGRKMTVN 336

>TYE7_YEAST (P33122) Serine-rich protein TYE7 (Basic-helix-loop-helix protein|
           SGC1)
          Length = 291

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 267 NEDMKSVLSLDDGRWSAPAEECTSTPSASLVG 362
           N+D  SVLS     W  P E   S+ S+S +G
Sbjct: 40  NKDSSSVLSASSSTWFEPLENIISSASSSSIG 71

>KCNC4_HUMAN (Q03721) Potassium voltage-gated channel subfamily C member 4|
           (Voltage-gated potassium channel subunit Kv3.4)
           (KSHIIIC)
          Length = 635

 Score = 26.6 bits (57), Expect(2) = 3.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 130 TGPVHCP*SPLGPNIECLASVSSLEKADLQIACGSAYQ 17
           TG +HCP    GP  E   +   +++ D++  C   Y+
Sbjct: 112 TGKLHCPADVCGPLFEEELTFWGIDETDVEPCCWMTYR 149



 Score = 20.8 bits (42), Expect(2) = 3.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 179 TLSKFKIAWILDLDCSNRP 123
           TL   ++AW+ D D   RP
Sbjct: 56  TLPGTRLAWLADPDGGGRP 74

>KCNC4_MOUSE (Q8R1C0) Potassium voltage-gated channel subfamily C member 4|
           (Voltage-gated potassium channel subunit Kv3.4)
          Length = 628

 Score = 26.6 bits (57), Expect(2) = 3.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 130 TGPVHCP*SPLGPNIECLASVSSLEKADLQIACGSAYQ 17
           TG +HCP    GP  E   +   +++ D++  C   Y+
Sbjct: 116 TGKLHCPADVCGPLFEEELTFWGIDETDVEPCCWMTYR 153



 Score = 20.8 bits (42), Expect(2) = 3.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 179 TLSKFKIAWILDLDCSNRP 123
           TL   ++AW+ D D   RP
Sbjct: 56  TLPGTRLAWLADPDGGGRP 74

>KCNC4_RAT (Q63734) Potassium voltage-gated channel subfamily C member 4|
           (Voltage-gated potassium channel subunit Kv3.4) (Raw3)
          Length = 625

 Score = 26.6 bits (57), Expect(2) = 3.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 130 TGPVHCP*SPLGPNIECLASVSSLEKADLQIACGSAYQ 17
           TG +HCP    GP  E   +   +++ D++  C   Y+
Sbjct: 113 TGKLHCPADVCGPLFEEELTFWGIDETDVEPCCWMTYR 150



 Score = 20.8 bits (42), Expect(2) = 3.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 179 TLSKFKIAWILDLDCSNRP 123
           TL   ++AW+ D D   RP
Sbjct: 56  TLPGTRLAWLADPDGGGRP 74

>MEPE_HUMAN (Q9NQ76) Matrix extracellular phosphoglycoprotein precursor|
           (Osteoblast/osteocyte factor 45) (OF45)
          Length = 525

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 123 GPVAAVKVQYPCNLEFTQSDMTSLVPAMLNQDGLHGPSTTYPDSTTKDNEDMKS 284
           GPV A+K+    N E T  ++ +++PA +N    H      P    +D++  KS
Sbjct: 156 GPVTAIKLLGEENKENTPRNVLNIIPASMNYAKAHSKDKKKPQ---RDSQAQKS 206

>CRAC_DICDI (P35401) Protein CRAC|
          Length = 697

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 120 TGPVAAVKVQYPCNLEFTQSDMTSLVPAMLNQDGLHGPSTTYPDSTTKDN 269
           TG  +    Q   NL+ + S M+SL  +  +      P+T YPD   KDN
Sbjct: 593 TGGGSVPSSQSTNNLQSSTSSMSSLSSSSTSTTKRSHPTTLYPDYQFKDN 642

>ATM_ASPFU (Q4WVM7) Serine/threonine-protein kinase tel1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase tel1) (Telomere length
            regulation protein 1) (ATM homolog)
          Length = 2796

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
 Frame = +3

Query: 147  QYPCNLEFT-QSDMTSLVPAMLNQDGLHGPS----TTYPDSTTKDNEDMKSVLSLDDGRW 311
            QY C ++ +  +D   L+ A LN   L G +    +T   S +  + D     ++D  +W
Sbjct: 1829 QYDCEIQMSGDADAHGLLKA-LNSSNLQGIANSLTSTLRGSKSSVSFDSMMQAAIDLRQW 1887

Query: 312  SAPAEECTSTPSASLVGELSQLN 380
              P      +PSA+L      LN
Sbjct: 1888 DLPVSPMNHSPSAALFRTFQSLN 1910

>LYAM3_BOVIN (P42201) P-selectin precursor (Granule membrane protein 140)|
           (GMP-140) (PADGEM) (Leukocyte-endothelial cell adhesion
           molecule 3) (LECAM3) (CD62P antigen)
          Length = 646

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
 Frame = +3

Query: 51  AFSKEETLARHSILGPNGLH----GQWTGPVAAVKVQYPCNLEFTQSDMTSLVPAMLNQD 218
           +FS EE  A   ++GP  +H    G WT P    K            D+ +   A +N  
Sbjct: 289 SFSCEEGFA---LVGPEVVHCTALGVWTAPTPVCKA-------LQCQDLPTSTKARVNCS 338

Query: 219 GLHGPSTTYPDSTTKDNEDM----KSVLS-LDDGRWSAPAEECTSTPSASL 356
              G        +   +E       SVL  LD G W AP  EC +   A+L
Sbjct: 339 HPFGDFRYQSTCSFTCDEGSFLVGASVLQCLDTGNWDAPFPECQAVTCAAL 389

>RNB_PHOLL (Q7N4F5) Exoribonuclease 2 (EC 3.1.13.1) (Exoribonuclease II)|
           (Ribonuclease II) (RNase II)
          Length = 647

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 12/114 (10%)
 Frame = +3

Query: 72  LARHSILGPNGLHGQWTGPVAAVKVQY-PCNLEFTQSDMTSLVPAM-----LNQDGLHGP 233
           +  H + G  G H + TG +      Y P  +  T+ ++    PAM     +N   L   
Sbjct: 134 MRHHPLKGSRGFHAEITGYITESDNHYAPWWVTLTRHNLERDAPAMTADCQMNDGDLERI 193

Query: 234 STTYPD------STTKDNEDMKSVLSLDDGRWSAPAEECTSTPSASLVGELSQL 377
             T  D      +TT+D +D   +   DDG           T   +   EL Q+
Sbjct: 194 DLTSLDFVTIDSATTEDMDDALHIAKQDDGSLKLSIAIADPTAYIAAGSELDQI 247

>PP1R8_HUMAN (Q12972) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)|
           (Protein phosphatase 1 regulatory inhibitor subunit 8)
           [Includes: Activator of RNA decay (EC 3.1.4.-) (ARD-1)]
          Length = 351

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 81  HSILG--PNGLHGQWTGPVAAVKVQYPCNLEFTQSDMTSLVPAMLNQDGLHGPSTTYPDS 254
           HS  G  P+G+HG  T  +  + + YP NL     D+T +VP+ +N +    P+   P++
Sbjct: 271 HSEAGSQPHGIHG--TALIGGLPMPYP-NLA-PDVDLTPVVPSAVNMNPAPNPAVYNPEA 326

Query: 255 TTK 263
             +
Sbjct: 327 VNE 329

>PP1R8_BOVIN (Q28147) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)|
           (Protein phosphatase 1, regulatory inhibitor subunit 8)
          Length = 351

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 81  HSILG--PNGLHGQWTGPVAAVKVQYPCNLEFTQSDMTSLVPAMLNQDGLHGPSTTYPDS 254
           HS  G  P+G+HG  T  +  + + YP NL     D+T +VP+ +N +    P+   P++
Sbjct: 271 HSEAGSQPHGIHG--TALIGGLPMPYP-NLA-PDVDLTPVVPSAVNMNPAPNPAVYNPEA 326

Query: 255 TTK 263
             +
Sbjct: 327 VNE 329

>LYS_CLOAB (P34020) Autolytic lysozyme (EC 3.2.1.17)|
           (1,4-beta-N-acetylmuramidase) (Autolysin)
          Length = 324

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = +3

Query: 159 NLEFTQSDMTSLVPAMLNQDGLHGPSTTYPDSTTKDNEDMKSVLSLD-DGRW----SAPA 323
           N++  Q D+  L+   L  DG+ GP T   ++  K   D +S++ L  DG W    S  A
Sbjct: 201 NIKAIQQDLNILLKRGLEVDGIEGPET---EAAIK---DFQSIMGLTVDGIWGTNTSGAA 254

Query: 324 EECTSTP 344
           ++  S P
Sbjct: 255 QQIFSRP 261

>BRCA2_HUMAN (P51587) Breast cancer type 2 susceptibility protein (Fanconi anemia|
            group D1 protein)
          Length = 3418

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 285  VLSLDDGRWSAPAEECTSTP 344
            +L  +D +WS P ++CTS P
Sbjct: 3183 ILHANDPKWSTPTKDCTSGP 3202

>PHF22_HUMAN (Q96CB8) Integrator complex subunit 12 (PHD finger protein 22)|
          Length = 462

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 219 GLHGPSTTYPDSTTKDNEDMKSVLSLDDGRW-SAPAEECTSTPSASLVGELSQ 374
           GL  PS+  P S+++ + +  S  S   G   S    E +S+PSASL G  SQ
Sbjct: 386 GLPSPSSLVPGSSSQLSGNGNSGTSGPSGSTTSKTTSESSSSPSASLKGPTSQ 438

>MSB2_YEAST (P32334) Protein MSB2 (Multicopy suppressor of bud emergence 2)|
          Length = 1306

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 213  QDGLHGPSTTYPDSTTKDNEDMKSVLSLDDGRWSAPAEECTSTPSAS 353
            Q  L   STT  + +T ++    S+++  D  W  P E  T  P A+
Sbjct: 928  QTSLTTESTTVLEPSTTNSSSTFSLVTSSDNNWWIPTELITQAPEAA 974

>KCNB2_HUMAN (Q92953) Potassium voltage-gated channel subfamily B member 2|
           (Voltage-gated potassium channel subunit Kv2.2)
          Length = 911

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
 Frame = +3

Query: 162 LEFTQSDMTSLVPAMLNQDGLHGP-----STTYPDSTTKDNEDMKS---VLSLDDGRWSA 317
           LE+   D+T  + A  +Q GLH P     +T  P S+ K +  +KS    ++  + R SA
Sbjct: 667 LEYAPVDITVNLDASGSQCGLHSPLQSDNATDSPKSSLKGSNPLKSRSLKVNFKENRGSA 726

Query: 318 P 320
           P
Sbjct: 727 P 727

>UBE3C_MOUSE (Q80U95) Ubiquitin-protein ligase E3C (EC 6.3.2.-)|
          Length = 1083

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +3

Query: 237 TTYPDSTTK---DNEDMKSVLSLDDGRWSAP--AEEC 332
           T  PDST+    DNE+     S +DGR SAP   EEC
Sbjct: 359 TGCPDSTSDSEDDNEETDQPNSPEDGRVSAPYITEEC 395

>SAHH2_ARATH (Q9LK36) Adenosylhomocysteinase 2 (EC 3.3.1.1)|
           (S-adenosyl-L-homocysteine hydrolase 1) (SAH hydrolase
           2) (AdoHcyase 2)
          Length = 485

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 180 DMTSLVPAMLNQDGLHGPSTTYPDSTTKDNEDMKSVLSL 296
           D T L+   +  + +   + T+PD T+ DN + + VLS+
Sbjct: 142 DATLLIHEGVKAEEIFAKNGTFPDPTSTDNPEFQIVLSI 180


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,782,427
Number of Sequences: 219361
Number of extensions: 1207045
Number of successful extensions: 3211
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 3037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3211
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)