ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550387.1| Oryza sativa (japonica cultivar-group), mRNA 260 4e-66
2dbj|AK063507.1| Oryza sativa (japonica cultivar-group) cDNA clon... 260 4e-66
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 256 6e-65
4dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic D... 256 6e-65
5gb|BT017084.1| Zea mays clone EL01N0360E11.c mRNA sequence 230 4e-57
6dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic D... 206 5e-50
7ref|NM_128125.2| Arabidopsis thaliana EMB2410 AT2G25660 (EMB2410... 60 7e-06
8gb|AC006053.3| Arabidopsis thaliana chromosome 2 clone F3N11 map... 60 7e-06
9gb|AY123147.1| Physcomitrella patens phytochrome (phy2) gene, co... 44 0.44
10gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 44 0.44
11gb|AC151317.2| Xenopus tropicalis clone ISB-22F7, complete sequence 42 1.7
12gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 42 1.7
13emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chrom... 42 1.7
14gb|AC087332.6| Mus Musculus Chromosome 2 RP23-58L18, complete se... 42 1.7
15dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
16gb|AC010873.12| Homo sapiens BAC clone RP11-112N16 from 2, compl... 42 1.7
17dbj|AP004376.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
18dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
19emb|AL845470.6| Mouse DNA sequence from clone RP23-204G5 on chro... 42 1.7
20gb|AC138604.5| Mus musculus BAC clone RP24-236J11 from chromosom... 40 6.9
21gb|AC114634.14| Mus musculus chromosome 8, clone RP24-116E2, com... 40 6.9
22gb|AC132317.2| Mus musculus BAC clone RP24-241J19 from chromosom... 40 6.9
23gb|AC013302.14| Homo sapiens chromosome , clone RP11-3P9, comple... 40 6.9
24gb|AC074193.6| Homo sapiens BAC clone RP11-611P20 from 7, comple... 40 6.9
25emb|AL121936.17|HSBK14H9 Human DNA sequence from clone CTA-14H9 ... 40 6.9
26emb|AL161508.2|ATCHRIV20 Arabidopsis thaliana DNA chromosome 4, ... 40 6.9
27gb|AC163199.8| Mus musculus 6 BAC RP23-333F8 (Roswell Park Cance... 40 6.9
28gb|AF216808.7| Homo sapiens chromosome 8 clone RP5-826O12, GS1-1... 40 6.9
29dbj|AK024111.1| Homo sapiens cDNA FLJ14049 fis, clone HEMBA1006779 40 6.9
30dbj|AK001535.1| Homo sapiens cDNA FLJ10673 fis, clone NT2RP2006393 40 6.9
31gb|U41268.1| Caenorhabditis elegans cosmid T14G12, complete sequ... 40 6.9
32dbj|AK038989.1| Mus musculus adult male hypothalamus cDNA, RIKEN... 40 6.9
33ref|NM_076244.2| Caenorhabditis elegans ForKHead transcription f... 40 6.9
34ref|NM_076243.2| Caenorhabditis elegans ForKHead transcription f... 40 6.9
35gb|AC150256.5| Aedes aegypti, clone XX-90O23, complete sequence 40 6.9
36gb|AC156831.2| Mus musculus BAC clone RP24-276N6 from chromosome... 40 6.9
37gb|AF270350.1|AF270350 Staphylococcus epidermidis strain SR1 clo... 40 6.9
38gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome 40 6.9
39gb|AC006268.1|AC006268 Arabidopsis thaliana BAC T24G23 from chro... 40 6.9
40gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete g... 40 6.9
41gb|AC139159.3| Mus musculus BAC clone RP23-119I13 from 8, comple... 40 6.9
42dbj|AP006085.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 6.9
43emb|AL669836.9| Mouse DNA sequence from clone RP23-79H8 on chrom... 40 6.9 
>ref|XM_550387.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3389

 Score =  260 bits (131), Expect = 4e-66
 Identities = 200/223 (89%)
 Strand = Plus / Plus

                                                                        
Query: 4    aagattgagttgaaatgtgaagttctggatatacgagcaaaaaatgttttaagtggccaa 63
            ||||||||  ||||||| ||||||||||| ||||||||||||||| |||| |||||||||
Sbjct: 1954 aagattgaactgaaatgcgaagttctggacatacgagcaaaaaatattttgagtggccaa 2013

                                                                        
Query: 64   gtagacacccagctgcaggttacaggctcaatattgcggccggatgtctctgggatgatc 123
            ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| 
Sbjct: 2014 gtagacagccagctgcaggttacaggctcaatattgcggccagatgtctctggaatgatt 2073

                                                                        
Query: 124  cggttaagccatggtgaagcatatttgcctcatgataaaggcaatggtgctgttgcgact 183
            ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| || 
Sbjct: 2074 cggctaagccatggtgaagcgtatttgcctcatgataaaggcaatggtgctgttgccacc 2133

                                                       
Query: 184  aggttggcttcaaacaagtccagctatcttcttgctggctttg 226
            ||| || ||||||| || |||| || | ||| |||||| ||||
Sbjct: 2134 aggctgtcttcaaataaatccatctctgttcctgctggttttg 2176



 Score =  256 bits (129), Expect = 6e-65
 Identities = 195/217 (89%)
 Strand = Plus / Plus

                                                                        
Query: 290  aaacagaaaggactcttgagaatggaagttttaagccaaacattgatgcccgactcaatg 349
            |||| |||||||||| |||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 aaactgaaaggactcctgaacatggaagttttaagccaaacattgatgcccgactcaatg 2311

                                                                        
Query: 350  acttgaagctcacgctgggaccagaattaagaattgtttatcctttaattctgaactttg 409
            |  ||||||||||  | ||||| |||||||| |||||||||||||||||| |||| ||||
Sbjct: 2312 atctgaagctcacatttggacctgaattaaggattgtttatcctttaattttgaattttg 2371

                                                                        
Query: 410  ctgtcagtggtgaccttgagcttaatggcatggtacatccaaagtacataagaccgaagg 469
            |||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct: 2372 ctgtgagtggcgaccttgagcttaatggcatggttcatccgaagtacataagacctaagg 2431

                                                 
Query: 470  gtatattaacatttgaaaatggtgaggtcaacttggt 506
            || | ||||| |||||||||||||||||||| |||||
Sbjct: 2432 gtgtcttaacttttgaaaatggtgaggtcaatttggt 2468
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>dbj|AK063507.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-F07, full
            insert sequence
          Length = 3389

 Score =  260 bits (131), Expect = 4e-66
 Identities = 200/223 (89%)
 Strand = Plus / Plus

                                                                        
Query: 4    aagattgagttgaaatgtgaagttctggatatacgagcaaaaaatgttttaagtggccaa 63
            ||||||||  ||||||| ||||||||||| ||||||||||||||| |||| |||||||||
Sbjct: 1954 aagattgaactgaaatgcgaagttctggacatacgagcaaaaaatattttgagtggccaa 2013

                                                                        
Query: 64   gtagacacccagctgcaggttacaggctcaatattgcggccggatgtctctgggatgatc 123
            ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| 
Sbjct: 2014 gtagacagccagctgcaggttacaggctcaatattgcggccagatgtctctggaatgatt 2073

                                                                        
Query: 124  cggttaagccatggtgaagcatatttgcctcatgataaaggcaatggtgctgttgcgact 183
            ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| || 
Sbjct: 2074 cggctaagccatggtgaagcgtatttgcctcatgataaaggcaatggtgctgttgccacc 2133

                                                       
Query: 184  aggttggcttcaaacaagtccagctatcttcttgctggctttg 226
            ||| || ||||||| || |||| || | ||| |||||| ||||
Sbjct: 2134 aggctgtcttcaaataaatccatctctgttcctgctggttttg 2176



 Score =  256 bits (129), Expect = 6e-65
 Identities = 195/217 (89%)
 Strand = Plus / Plus

                                                                        
Query: 290  aaacagaaaggactcttgagaatggaagttttaagccaaacattgatgcccgactcaatg 349
            |||| |||||||||| |||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 aaactgaaaggactcctgaacatggaagttttaagccaaacattgatgcccgactcaatg 2311

                                                                        
Query: 350  acttgaagctcacgctgggaccagaattaagaattgtttatcctttaattctgaactttg 409
            |  ||||||||||  | ||||| |||||||| |||||||||||||||||| |||| ||||
Sbjct: 2312 atctgaagctcacatttggacctgaattaaggattgtttatcctttaattttgaattttg 2371

                                                                        
Query: 410  ctgtcagtggtgaccttgagcttaatggcatggtacatccaaagtacataagaccgaagg 469
            |||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct: 2372 ctgtgagtggcgaccttgagcttaatggcatggttcatccgaagtacataagacctaagg 2431

                                                 
Query: 470  gtatattaacatttgaaaatggtgaggtcaacttggt 506
            || | ||||| |||||||||||||||||||| |||||
Sbjct: 2432 gtgtcttaacttttgaaaatggtgaggtcaatttggt 2468
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  256 bits (129), Expect = 6e-65
 Identities = 195/217 (89%)
 Strand = Plus / Plus

                                                                           
Query: 290     aaacagaaaggactcttgagaatggaagttttaagccaaacattgatgcccgactcaatg 349
               |||| |||||||||| |||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 4138034 aaactgaaaggactcctgaacatggaagttttaagccaaacattgatgcccgactcaatg 4138093

                                                                           
Query: 350     acttgaagctcacgctgggaccagaattaagaattgtttatcctttaattctgaactttg 409
               |  ||||||||||  | ||||| |||||||| |||||||||||||||||| |||| ||||
Sbjct: 4138094 atctgaagctcacatttggacctgaattaaggattgtttatcctttaattttgaattttg 4138153

                                                                           
Query: 410     ctgtcagtggtgaccttgagcttaatggcatggtacatccaaagtacataagaccgaagg 469
               |||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct: 4138154 ctgtgagtggcgaccttgagcttaatggcatggttcatccgaagtacataagacctaagg 4138213

                                                    
Query: 470     gtatattaacatttgaaaatggtgaggtcaacttggt 506
               || | ||||| |||||||||||||||||||| |||||
Sbjct: 4138214 gtgtcttaacttttgaaaatggtgaggtcaatttggt 4138250



 Score =  206 bits (104), Expect = 5e-50
 Identities = 155/172 (90%)
 Strand = Plus / Plus

                                                                           
Query: 55      agtggccaagtagacacccagctgcaggttacaggctcaatattgcggccggatgtctct 114
               |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4137562 agtggccaagtagacagccagctgcaggttacaggctcaatattgcggccagatgtctct 4137621

                                                                           
Query: 115     gggatgatccggttaagccatggtgaagcatatttgcctcatgataaaggcaatggtgct 174
               || ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4137622 ggaatgattcggctaagccatggtgaagcgtatttgcctcatgataaaggcaatggtgct 4137681

                                                                   
Query: 175     gttgcgactaggttggcttcaaacaagtccagctatcttcttgctggctttg 226
               ||||| || ||| || ||||||| || |||| || | ||| |||||| ||||
Sbjct: 4137682 gttgccaccaggctgtcttcaaataaatccatctctgttcctgctggttttg 4137733



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                 
Query: 4       aagattgagttgaaatgtgaagttctggatatacgagcaaaaaatgtttt 53
               ||||||||  ||||||| ||||||||||| ||||||||||||||| ||||
Sbjct: 4137254 aagattgaactgaaatgcgaagttctggacatacgagcaaaaaatatttt 4137303
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>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406H10
          Length = 156419

 Score =  256 bits (129), Expect = 6e-65
 Identities = 195/217 (89%)
 Strand = Plus / Plus

                                                                         
Query: 290   aaacagaaaggactcttgagaatggaagttttaagccaaacattgatgcccgactcaatg 349
             |||| |||||||||| |||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 85005 aaactgaaaggactcctgaacatggaagttttaagccaaacattgatgcccgactcaatg 85064

                                                                         
Query: 350   acttgaagctcacgctgggaccagaattaagaattgtttatcctttaattctgaactttg 409
             |  ||||||||||  | ||||| |||||||| |||||||||||||||||| |||| ||||
Sbjct: 85065 atctgaagctcacatttggacctgaattaaggattgtttatcctttaattttgaattttg 85124

                                                                         
Query: 410   ctgtcagtggtgaccttgagcttaatggcatggtacatccaaagtacataagaccgaagg 469
             |||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct: 85125 ctgtgagtggcgaccttgagcttaatggcatggttcatccgaagtacataagacctaagg 85184

                                                  
Query: 470   gtatattaacatttgaaaatggtgaggtcaacttggt 506
             || | ||||| |||||||||||||||||||| |||||
Sbjct: 85185 gtgtcttaacttttgaaaatggtgaggtcaatttggt 85221



 Score =  206 bits (104), Expect = 5e-50
 Identities = 155/172 (90%)
 Strand = Plus / Plus

                                                                         
Query: 55    agtggccaagtagacacccagctgcaggttacaggctcaatattgcggccggatgtctct 114
             |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 84533 agtggccaagtagacagccagctgcaggttacaggctcaatattgcggccagatgtctct 84592

                                                                         
Query: 115   gggatgatccggttaagccatggtgaagcatatttgcctcatgataaaggcaatggtgct 174
             || ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 84593 ggaatgattcggctaagccatggtgaagcgtatttgcctcatgataaaggcaatggtgct 84652

                                                                 
Query: 175   gttgcgactaggttggcttcaaacaagtccagctatcttcttgctggctttg 226
             ||||| || ||| || ||||||| || |||| || | ||| |||||| ||||
Sbjct: 84653 gttgccaccaggctgtcttcaaataaatccatctctgttcctgctggttttg 84704



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 4     aagattgagttgaaatgtgaagttctggatatacgagcaaaaaatgtttt 53
             ||||||||  ||||||| ||||||||||| ||||||||||||||| ||||
Sbjct: 84225 aagattgaactgaaatgcgaagttctggacatacgagcaaaaaatatttt 84274
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>gb|BT017084.1| Zea mays clone EL01N0360E11.c mRNA sequence
          Length = 1083

 Score =  230 bits (116), Expect = 4e-57
 Identities = 176/196 (89%)
 Strand = Plus / Plus

                                                                       
Query: 315 aagttttaagccaaacattgatgcccgactcaatgacttgaagctcacgctgggaccaga 374
           ||||||||| |||||||||||||| || || |||||  ||||||||||  ||||||||||
Sbjct: 11  aagttttaatccaaacattgatgcacggctaaatgatctgaagctcaccttgggaccaga 70

                                                                       
Query: 375 attaagaattgtttatcctttaattctgaactttgctgtcagtggtgaccttgagcttaa 434
           ||| || ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 71  attgaggattgtttatcctttaattctgaattttgctgtcagtggtgacctagagcttaa 130

                                                                       
Query: 435 tggcatggtacatccaaagtacataagaccgaagggtatattaacatttgaaaatggtga 494
           ||| ||||| |||||||||||  ||||||| ||||| || ||||||||||||||||||||
Sbjct: 131 tgggatggttcatccaaagtatctaagacctaagggcatcttaacatttgaaaatggtga 190

                           
Query: 495 ggtcaacttggtagct 510
           ||||||| ||||||||
Sbjct: 191 ggtcaacctggtagct 206
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>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0509B06
          Length = 104515

 Score =  206 bits (104), Expect = 5e-50
 Identities = 155/172 (90%)
 Strand = Plus / Plus

                                                                          
Query: 55     agtggccaagtagacacccagctgcaggttacaggctcaatattgcggccggatgtctct 114
              |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 104305 agtggccaagtagacagccagctgcaggttacaggctcaatattgcggccagatgtctct 104364

                                                                          
Query: 115    gggatgatccggttaagccatggtgaagcatatttgcctcatgataaaggcaatggtgct 174
              || ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 104365 ggaatgattcggctaagccatggtgaagcgtatttgcctcatgataaaggcaatggtgct 104424

                                                                  
Query: 175    gttgcgactaggttggcttcaaacaagtccagctatcttcttgctggctttg 226
              ||||| || ||| || ||||||| || |||| || | ||| |||||| ||||
Sbjct: 104425 gttgccaccaggctgtcttcaaataaatccatctctgttcctgctggttttg 104476



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                
Query: 4      aagattgagttgaaatgtgaagttctggatatacgagcaaaaaatgtttt 53
              ||||||||  ||||||| ||||||||||| ||||||||||||||| ||||
Sbjct: 103997 aagattgaactgaaatgcgaagttctggacatacgagcaaaaaatatttt 104046
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>ref|NM_128125.2| Arabidopsis thaliana EMB2410 AT2G25660 (EMB2410) mRNA, complete cds
          Length = 6694

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                        
Query: 391  cctttaattctgaactttgctgtcagtggtgaccttgagcttaatggcatggtacatcca 450
            ||||||||||| || |||||||| |||||||| ||||| ||| |||||||||  ||||||
Sbjct: 5704 cctttaattcttaattttgctgttagtggtgagcttgaacttgatggcatggctcatcca 5763

              
Query: 451  aa 452
            ||
Sbjct: 5764 aa 5765



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                      
Query: 16   aaatgtgaagttctggatatacgagcaaaaaatgttttaagt 57
            |||||||||||||| ||  |||||||||| ||| ||||||||
Sbjct: 5293 aaatgtgaagttctagaagtacgagcaaagaattttttaagt 5334
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>gb|AC006053.3| Arabidopsis thaliana chromosome 2 clone F3N11 map B68, complete
             sequence
          Length = 100745

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                         
Query: 391   cctttaattctgaactttgctgtcagtggtgaccttgagcttaatggcatggtacatcca 450
             ||||||||||| || |||||||| |||||||| ||||| ||| |||||||||  ||||||
Sbjct: 34467 cctttaattcttaattttgctgttagtggtgagcttgaacttgatggcatggctcatcca 34408

               
Query: 451   aa 452
             ||
Sbjct: 34407 aa 34406



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 16    aaatgtgaagttctggatatacgagcaaaaaatgttttaag 56
             |||||||||||||| ||  |||||||||| ||| |||||||
Sbjct: 35247 aaatgtgaagttctagaagtacgagcaaagaattttttaag 35207
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>gb|AY123147.1| Physcomitrella patens phytochrome (phy2) gene, complete cds
          Length = 6507

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 335  atgcccgactcaatgacttgaagctc 360
            |||||||||| |||||||||||||||
Sbjct: 2971 atgcccgactgaatgacttgaagctc 2996
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 378     aagaattgtttatcctttaatt 399
               ||||||||||||||||||||||
Sbjct: 3941100 aagaattgtttatcctttaatt 3941079
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>gb|AC151317.2| Xenopus tropicalis clone ISB-22F7, complete sequence
          Length = 79964

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 383   ttgtttatcctttaattctga 403
             |||||||||||||||||||||
Sbjct: 44236 ttgtttatcctttaattctga 44256
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>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 404     actttgctgtcagtggtgaccttgagctt 432
               |||||| ||||||||| ||||||||||||
Sbjct: 1490389 actttgatgtcagtggcgaccttgagctt 1490417
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>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete
              sequence
          Length = 3214944

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 318    ttttaagccaaacattgatgc 338
              |||||||||||||||||||||
Sbjct: 942624 ttttaagccaaacattgatgc 942644
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>gb|AC087332.6| Mus Musculus Chromosome 2 RP23-58L18, complete sequence
          Length = 143720

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 42    aaaaaatgttttaagtggcca 62
             |||||||||||||||||||||
Sbjct: 87479 aaaaaatgttttaagtggcca 87459
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 395      taattctgaactttgctgtca 415
                |||||||||||||||||||||
Sbjct: 24002716 taattctgaactttgctgtca 24002736
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>gb|AC010873.12| Homo sapiens BAC clone RP11-112N16 from 2, complete sequence
          Length = 180602

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 188   tggcttcaaacaagtccagct 208
             |||||||||||||||||||||
Sbjct: 40690 tggcttcaaacaagtccagct 40710
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>dbj|AP004376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0481F05
          Length = 139739

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 395   taattctgaactttgctgtca 415
             |||||||||||||||||||||
Sbjct: 30116 taattctgaactttgctgtca 30136
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>dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0419H09
          Length = 143533

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 395    taattctgaactttgctgtca 415
              |||||||||||||||||||||
Sbjct: 135867 taattctgaactttgctgtca 135887
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>emb|AL845470.6| Mouse DNA sequence from clone RP23-204G5 on chromosome 2, complete
             sequence
          Length = 90648

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 42    aaaaaatgttttaagtggcca 62
             |||||||||||||||||||||
Sbjct: 21588 aaaaaatgttttaagtggcca 21608
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>gb|AC138604.5| Mus musculus BAC clone RP24-236J11 from chromosome 15, complete sequence
          Length = 196777

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     tgttttaagtggccaagtag 67
              ||||||||||||||||||||
Sbjct: 193129 tgttttaagtggccaagtag 193148
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>gb|AC114634.14| Mus musculus chromosome 8, clone RP24-116E2, complete sequence
          Length = 198670

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 381   aattgtttatcctttaattctgaacttt 408
             |||||||||| || ||||||||||||||
Sbjct: 35150 aattgtttatgctgtaattctgaacttt 35123
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>gb|AC132317.2| Mus musculus BAC clone RP24-241J19 from chromosome 15, complete sequence
          Length = 171980

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     tgttttaagtggccaagtag 67
              ||||||||||||||||||||
Sbjct: 140336 tgttttaagtggccaagtag 140317
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>gb|AC013302.14| Homo sapiens chromosome , clone RP11-3P9, complete sequence
          Length = 161739

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    agcaaaaaatgttttaagtg 58
             ||||||||||||||||||||
Sbjct: 98667 agcaaaaaatgttttaagtg 98686
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>gb|AC074193.6| Homo sapiens BAC clone RP11-611P20 from 7, complete sequence
          Length = 44380

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    aaaatgttttaagtggccaa 63
             ||||||||||||||||||||
Sbjct: 14595 aaaatgttttaagtggccaa 14576
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>emb|AL121936.17|HSBK14H9 Human DNA sequence from clone CTA-14H9 on chromosome 6 Contains the 3'
             end of the BTN2A1 gene encoding butyrophilin 2A, the
             BTN1A1 gene encoding butyrophilin 1A,  part of a novel
             gene, the HMG17L3 gene encoding two variants of the
             high-mobility group (nonhistone chromosomal) protein
             17-like 3, 2 CpG islands, ESTs, STSs and GSSs, complete
             sequence
          Length = 122979

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 375   attaagaattgtttatcctttaat 398
             ||||||| ||||||||||||||||
Sbjct: 63308 attaagacttgtttatcctttaat 63285
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>emb|AL161508.2|ATCHRIV20 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 20
          Length = 196517

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   tgcccgactcaatgacttga 355
             ||||||||||||||||||||
Sbjct: 99657 tgcccgactcaatgacttga 99676
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>gb|AC163199.8| Mus musculus 6 BAC RP23-333F8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 233589

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 438    catggtacatccaaagtaca 457
              ||||||||||||||||||||
Sbjct: 117806 catggtacatccaaagtaca 117787
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>gb|AF216808.7| Homo sapiens chromosome 8 clone RP5-826O12, GS1-141O6, RP1-124D8 map
              8p21-p11, complete sequence
          Length = 215385

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     agcaaaaaatgttttaagtg 58
              ||||||||||||||||||||
Sbjct: 142347 agcaaaaaatgttttaagtg 142366
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>dbj|AK024111.1| Homo sapiens cDNA FLJ14049 fis, clone HEMBA1006779
          Length = 3132

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 375  attaagaattgtttatcctttaat 398
            ||||||| ||||||||||||||||
Sbjct: 2496 attaagacttgtttatcctttaat 2473
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>dbj|AK001535.1| Homo sapiens cDNA FLJ10673 fis, clone NT2RP2006393
          Length = 1811

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 375  attaagaattgtttatcctttaat 398
            ||||||| ||||||||||||||||
Sbjct: 1175 attaagacttgtttatcctttaat 1152
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>gb|U41268.1| Caenorhabditis elegans cosmid T14G12, complete sequence
          Length = 34351

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     ttgagttgaaatgtgaagtt 27
             ||||||||||||||||||||
Sbjct: 13960 ttgagttgaaatgtgaagtt 13979
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>dbj|AK038989.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched
            library, clone:A230081N13 product:unclassifiable, full
            insert sequence
          Length = 2844

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 381  aattgtttatcctttaattctgaacttt 408
            |||||||||| || ||||||||||||||
Sbjct: 2503 aattgtttatgctgtaattctgaacttt 2476
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>ref|NM_076244.2| Caenorhabditis elegans ForKHead transcription factor family
          member (fkh-2) (fkh-2) mRNA, complete cds
          Length = 812

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 8  ttgagttgaaatgtgaagtt 27
          ||||||||||||||||||||
Sbjct: 82 ttgagttgaaatgtgaagtt 63
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>ref|NM_076243.2| Caenorhabditis elegans ForKHead transcription factor family member
           (fkh-2) (fkh-2) mRNA, complete cds
          Length = 1178

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 8   ttgagttgaaatgtgaagtt 27
           ||||||||||||||||||||
Sbjct: 117 ttgagttgaaatgtgaagtt 98
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>gb|AC150256.5| Aedes aegypti, clone XX-90O23, complete sequence
          Length = 70397

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    gaaatgtgaagttctggata 34
             ||||||||||||||||||||
Sbjct: 13161 gaaatgtgaagttctggata 13180
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>gb|AC156831.2| Mus musculus BAC clone RP24-276N6 from chromosome 9, complete sequence
          Length = 152361

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    agtggccaagtagacaccca 74
             ||||||||||||||||||||
Sbjct: 62256 agtggccaagtagacaccca 62237
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>gb|AF270350.1|AF270350 Staphylococcus epidermidis strain SR1 clone step.4024b09 genomic
            sequence
          Length = 3110

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 310  aatggaagttttaagccaaacatt 333
            ||||| ||||||||||||||||||
Sbjct: 1424 aatgggagttttaagccaaacatt 1447
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>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 310     aatggaagttttaagccaaacatt 333
               ||||| ||||||||||||||||||
Sbjct: 1812526 aatgggagttttaagccaaacatt 1812549
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>gb|AC006268.1|AC006268 Arabidopsis thaliana BAC T24G23 from chromosome IV near 21 cM, complete
             sequence
          Length = 105420

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   tgcccgactcaatgacttga 355
             ||||||||||||||||||||
Sbjct: 76296 tgcccgactcaatgacttga 76315
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>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 310     aatggaagttttaagccaaacatt 333
               ||||| ||||||||||||||||||
Sbjct: 1817495 aatgggagttttaagccaaacatt 1817518
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>gb|AC139159.3| Mus musculus BAC clone RP23-119I13 from 8, complete sequence
          Length = 185950

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 381    aattgtttatcctttaattctgaacttt 408
              |||||||||| || ||||||||||||||
Sbjct: 128273 aattgtttatgctgtaattctgaacttt 128246
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>dbj|AP006085.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT28L24, TM0128,
             complete sequence
          Length = 98492

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    aggttacaggctcaatattg 99
             ||||||||||||||||||||
Sbjct: 38961 aggttacaggctcaatattg 38942
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>emb|AL669836.9| Mouse DNA sequence from clone RP23-79H8 on chromosome 2, complete
              sequence
          Length = 141877

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 7      attgagttgaaatgtgaagttctg 30
              |||||||||||| |||||||||||
Sbjct: 130938 attgagttgaaaagtgaagttctg 130915


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,083,074
Number of Sequences: 3902068
Number of extensions: 5083074
Number of successful extensions: 99066
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98851
Number of HSP's gapped (non-prelim): 215
length of query: 510
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 488
effective length of database: 17,147,199,772
effective search space: 8367833488736
effective search space used: 8367833488736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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