ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26n05 |
|---|---|
| Clone Library Name | barley_pub |
>YER0_YEAST (P40053) Protein YER080W| Length = 627 Score = 31.2 bits (69), Expect = 1.2 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = -1 Query: 362 KNGMGEHATLQPFAAPWPRQSPHDTI 285 K+ + H ++PF PWP++SP D I Sbjct: 320 KSHLDFHKQMKPFLGPWPKKSPMDII 345
>GCM1_MOUSE (P70348) Chorion-specific transcription factor GCMa (Glial cells| missing homolog 1) (GCM motif protein 1) (mGCMa) (mGCM1) Length = 436 Score = 30.4 bits (67), Expect = 2.1 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 6/79 (7%) Frame = +2 Query: 185 PCASCGCGEVWSRRGGRCVYKLGTWKCNLVVVGLLYH---EDSDAAMERQMAGGLHALPC 355 P A GC +WS GG + + + V L YH +D HALP Sbjct: 346 PAAQPGCHPLWSNPGGEPYEEKVSVDLSSYVPSLTYHPPQQDPFLLTYGSPTQQQHALPG 405 Query: 356 HS*NW---QEVACYVCDGF 403 S W +E+AC D F Sbjct: 406 KSNRWDFDEEMACMGLDHF 424
>PRD_DROME (P06601) Segmentation protein paired| Length = 613 Score = 30.4 bits (67), Expect = 2.1 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -2 Query: 232 SSTPGPNLPATARGTRRSPQPGAHAHPQYA 143 +S P P + G +P P AH HPQYA Sbjct: 538 ASYPAPGHAHSHHGHPHAPHPHAHPHPQYA 567
>PACC_CEPAC (Q96X49) pH-response transcription factor pacC/RIM101| Length = 621 Score = 30.4 bits (67), Expect = 2.1 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -2 Query: 268 ITFPGSEFIYTSSSTPGPNLPATARGTRRSPQPGAHAHP 152 +T P S YTS +P P+ PA + +R S G+ +P Sbjct: 408 VTPPSSAVSYTSGHSPSPSAPAMSPQSRHSSTSGSVMYP 446
>Y1942_CHRVO (Q7NWN9) UPF0209 protein CV_1942| Length = 660 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Frame = -2 Query: 271 KITFPGSEFI-YTSSSTPGPNLPATARGTRRSPQPGAHAHPQYAWLVA--CMALPARWRW 101 +++ PG+ F +TS+ L R++P GA H + W+ A W Sbjct: 187 RLSGPGASFATFTSAGAVRRGLAGAGFEVRKAPGHGAKRHISHGWIATPPDAGWQAPWYA 246 Query: 100 RPQAQW 83 RP+ +W Sbjct: 247 RPEPRW 252
>ERBB2_MOUSE (P70424) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) Length = 1256 Score = 29.6 bits (65), Expect = 3.5 Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 12/90 (13%) Frame = +2 Query: 125 HAGHQP---CVLR------MCVRSWLWR---TPCASCGCGEVWSRRGGRCVYKLGTWKCN 268 H+G++P C L +C R W T C +C RG CV + WK Sbjct: 496 HSGNRPEEACGLEGLVCNSLCARGHCWGPGPTQCVNCS----QFLRGQECVEECRVWK-- 549 Query: 269 LVVVGLLYHEDSDAAMERQMAGGLHALPCH 358 + R+ G H LPCH Sbjct: 550 --------------GLPREYVRGKHCLPCH 565
>CBPS2_YEAST (P0C155) Putative carboxypeptidase YOL153C (EC 3.4.17.-)| Length = 581 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Frame = -2 Query: 427 YQPTDPSLKSITYIA-CNFLPVSRMAWESMQPSSHLPLHG 311 ++ TDPSLK I ++A + +PV+R W+S Q + PL G Sbjct: 155 WEGTDPSLKPILFMAHQDVVPVNREIWDSWQ---YPPLSG 191
>HNRL1_HUMAN (Q9BUJ2) Heterogeneous nuclear ribonucleoprotein U-like protein 1| (Adenovirus early region 1B-associated protein 5) (E1B-55 kDa-associated protein 5) (E1B-AP5) Length = 856 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/43 (32%), Positives = 19/43 (44%) Frame = -3 Query: 252 PSLYTHLPPRRDQTSPQPQEAHGVRHNQERTHILSTHGWWPAW 124 P+ YT PP QT PQP ++ Q+ G WP + Sbjct: 794 PAPYTPPPPPTAQTYPQPSYNQYQQYAQQWNQYYQNQGQWPPY 836
>SHPS1_BOVIN (O46631) Tyrosine-protein phosphatase non-receptor type substrate 1| precursor (SHP substrate 1) (SHPS-1) (Inhibitory receptor SHPS-1) (Signal-regulatory protein alpha-1) (Sirp-alpha-1) (MyD-1 antigen) (CD172a antigen) Length = 506 Score = 29.3 bits (64), Expect = 4.6 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -2 Query: 277 YYKITFPGSEFIYTSSSTPGPNLPATARGTRRS 179 ++K T PG EFIY+ P P + + T+R+ Sbjct: 68 WFKGTGPGREFIYSQKEAPFPRVTNVSDATKRN 100
>SPIKE_CVMJC (Q02385) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1376 Score = 29.3 bits (64), Expect = 4.6 Identities = 17/58 (29%), Positives = 25/58 (43%) Frame = +2 Query: 128 AGHQPCVLRMCVRSWLWRTPCASCGCGEVWSRRGGRCVYKLGTWKCNLVVVGLLYHED 301 AG CVL + C GCG R+ G C + G + ++V+ + HED Sbjct: 1327 AGVAVCVLLFFI--------CCCTGCGSCCFRKCGSCCDEYGGHQDSIVIYNISAHED 1376
>SPIKE_CVM4 (P22432) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1376 Score = 28.5 bits (62), Expect = 7.9 Identities = 17/58 (29%), Positives = 25/58 (43%) Frame = +2 Query: 128 AGHQPCVLRMCVRSWLWRTPCASCGCGEVWSRRGGRCVYKLGTWKCNLVVVGLLYHED 301 AG CVL + C GCG R+ G C + G + ++V+ + HED Sbjct: 1327 AGVAVCVLLFFI--------CCCTGCGSCCFRKCGSCCDEYGGHQDSIVIHNISAHED 1376
>MPIP_DROME (P20483) M-phase inducer phosphatase (EC 3.1.3.48) (Protein string)| (Cdc25-like protein) Length = 479 Score = 28.5 bits (62), Expect = 7.9 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Frame = -2 Query: 235 SSSTPGPNLPATARGTRRSPQPGAHAH--PQYAWLVACMALPARWRWRPQAQWTLVRLRQ 62 S++TP P P TAR + P+P A A+ P + C A+ P + + V + Sbjct: 189 STTTPPPKTPETARDCFKRPEPPASANCSPIQSKRHRCAAVEKENCPAP-SPLSQVTISH 247 Query: 61 PLMMRECLS 35 P +R+C+S Sbjct: 248 PPPLRKCMS 256
>SPIKE_CVMJH (P11225) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1235 Score = 28.5 bits (62), Expect = 7.9 Identities = 17/58 (29%), Positives = 25/58 (43%) Frame = +2 Query: 128 AGHQPCVLRMCVRSWLWRTPCASCGCGEVWSRRGGRCVYKLGTWKCNLVVVGLLYHED 301 AG CVL + C GCG R+ G C + G + ++V+ + HED Sbjct: 1186 AGVAVCVLLFFI--------CCCTGCGSCCFRKCGSCCDEYGGHQDSIVIHNISAHED 1235 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,505,983 Number of Sequences: 219361 Number of extensions: 1510589 Number of successful extensions: 5153 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4882 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5144 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
