ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd26n05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY108822.1| Zea mays PCO075513 mRNA sequence 113 5e-22
2ref|NM_190175.1| Oryza sativa (japonica cultivar-group), predic... 100 8e-18
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 100 8e-18
4dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic D... 100 8e-18
5dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic D... 100 8e-18
6dbj|AK102849.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 8e-18
7gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome... 96 1e-16
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
9dbj|AK101519.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
10dbj|AK066897.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
11gb|AY104259.1| Zea mays PCO067008 mRNA sequence 62 2e-06
12emb|BX510990.32| Zebrafish DNA sequence from clone CH211-67F13 i... 44 0.38
13gb|AC140196.3| Mus musculus BAC clone RP24-267C3 from chromosome... 40 6.0
14gb|AC124190.4| Mus musculus BAC clone RP23-267M9 from 3, complet... 40 6.0
15gb|AC098745.4| Mus musculus BAC clone RP23-122P16 from 18, compl... 40 6.0
16gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.0
17gb|AC182752.1| Gasterosteus aculeatus clone VMRC26-161K14, compl... 40 6.0
18dbj|AK018305.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 6.0
19emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 6.0
20gb|AC108818.11| Mus musculus chromosome 7, clone RP23-474B17, co... 40 6.0 
>gb|AY108822.1| Zea mays PCO075513 mRNA sequence
          Length = 1110

 Score =  113 bits (57), Expect = 5e-22
 Identities = 102/117 (87%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctgcgactccttcccgtcgctccacacctgcccagacaggcactccctcatcatcagcgg 61
           |||||||||||||||| |||| ||||||||||| || |||||||||||||||||||| ||
Sbjct: 694 ctgcgactccttcccggcgctgcacacctgccccgagaggcactccctcatcatcagtgg 753

                                                                    
Query: 62  ctgcctcagcctgactaacgtccactgtgcctgcggcctccaacgccaccgtgccgg 118
           |||||||||||| ||    |||||||| ||||||| |||||| |  |||||||||||
Sbjct: 754 ctgcctcagcctcacgtcagtccactgcgcctgcgccctccacccacaccgtgccgg 810
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>ref|NM_190175.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1140

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 83/94 (88%)
 Strand = Plus / Plus

                                                                        
Query: 3    tgcgactccttcccgtcgctccacacctgcccagacaggcactccctcatcatcagcggc 62
            ||||||||||||||| |||||||||| ||||| ||  |||||||||||||||||||||| 
Sbjct: 994  tgcgactccttcccggcgctccacacgtgcccggagcggcactccctcatcatcagcgga 1053

                                              
Query: 63   tgcctcagcctgactaacgtccactgtgcctgcg 96
            ||||||||||| ||   ||||||||| |||||||
Sbjct: 1054 tgcctcagcctcacctccgtccactgcgcctgcg 1087
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                            
Query: 3        tgcgactccttcccgtcgctccacacctgcccagacaggcactccctcatcatcagcggc 62
                ||||||||||||||| |||||||||| ||||| ||  |||||||||||||||||||||| 
Sbjct: 38268660 tgcgactccttcccggcgctccacacgtgcccggagcggcactccctcatcatcagcgga 38268601

                                                  
Query: 63       tgcctcagcctgactaacgtccactgtgcctgcg 96
                ||||||||||| ||   ||||||||| |||||||
Sbjct: 38268600 tgcctcagcctcacctccgtccactgcgcctgcg 38268567
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>dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0018C10
          Length = 200183

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                          
Query: 3      tgcgactccttcccgtcgctccacacctgcccagacaggcactccctcatcatcagcggc 62
              ||||||||||||||| |||||||||| ||||| ||  |||||||||||||||||||||| 
Sbjct: 187894 tgcgactccttcccggcgctccacacgtgcccggagcggcactccctcatcatcagcgga 187835

                                                
Query: 63     tgcctcagcctgactaacgtccactgtgcctgcg 96
              ||||||||||| ||   ||||||||| |||||||
Sbjct: 187834 tgcctcagcctcacctccgtccactgcgcctgcg 187801
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>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1065E10
          Length = 183580

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                         
Query: 3     tgcgactccttcccgtcgctccacacctgcccagacaggcactccctcatcatcagcggc 62
             ||||||||||||||| |||||||||| ||||| ||  |||||||||||||||||||||| 
Sbjct: 29485 tgcgactccttcccggcgctccacacgtgcccggagcggcactccctcatcatcagcgga 29426

                                               
Query: 63    tgcctcagcctgactaacgtccactgtgcctgcg 96
             ||||||||||| ||   ||||||||| |||||||
Sbjct: 29425 tgcctcagcctcacctccgtccactgcgcctgcg 29392
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>dbj|AK102849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110C14, full
            insert sequence
          Length = 2219

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 83/94 (88%)
 Strand = Plus / Plus

                                                                        
Query: 3    tgcgactccttcccgtcgctccacacctgcccagacaggcactccctcatcatcagcggc 62
            ||||||||||||||| |||||||||| ||||| ||  |||||||||||||||||||||| 
Sbjct: 1880 tgcgactccttcccggcgctccacacgtgcccggagcggcactccctcatcatcagcgga 1939

                                              
Query: 63   tgcctcagcctgactaacgtccactgtgcctgcg 96
            ||||||||||| ||   ||||||||| |||||||
Sbjct: 1940 tgcctcagcctcacctccgtccactgcgcctgcg 1973
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>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0044P19, complete sequence
          Length = 176917

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 102/120 (85%)
 Strand = Plus / Plus

                                                                         
Query: 2     ctgcgactccttcccgtcgctccacacctgcccagacaggcactccctcatcatcagcgg 61
             |||||||||||||||| | |||||||| ||||| |  ||||||||||| |||||||| ||
Sbjct: 19571 ctgcgactccttcccggccctccacacttgccctgggaggcactccctgatcatcagtgg 19630

                                                                         
Query: 62    ctgcctcagcctgactaacgtccactgtgcctgcggcctccaacgccaccgtgccggaag 121
             |||||||||||||||    |||||||| ||||||| |||||| |  |||||||| |||||
Sbjct: 19631 ctgcctcagcctgacgtctgtccactgcgcctgcgccctccacccgcaccgtgctggaag 19690
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 102/120 (85%)
 Strand = Plus / Plus

                                                                            
Query: 2        ctgcgactccttcccgtcgctccacacctgcccagacaggcactccctcatcatcagcgg 61
                |||||||||||||||| | |||||||| ||||| |  ||||||||||| |||||||| ||
Sbjct: 20706347 ctgcgactccttcccggccctccacacttgccctgggaggcactccctgatcatcagtgg 20706406

                                                                            
Query: 62       ctgcctcagcctgactaacgtccactgtgcctgcggcctccaacgccaccgtgccggaag 121
                |||||||||||||||    |||||||| ||||||| |||||| |  |||||||| |||||
Sbjct: 20706407 ctgcctcagcctgacgtctgtccactgcgcctgcgccctccacccgcaccgtgctggaag 20706466
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>dbj|AK101519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046J24, full
            insert sequence
          Length = 1840

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 102/120 (85%)
 Strand = Plus / Plus

                                                                        
Query: 2    ctgcgactccttcccgtcgctccacacctgcccagacaggcactccctcatcatcagcgg 61
            |||||||||||||||| | |||||||| ||||| |  ||||||||||| |||||||| ||
Sbjct: 1356 ctgcgactccttcccggccctccacacttgccctgggaggcactccctgatcatcagtgg 1415

                                                                        
Query: 62   ctgcctcagcctgactaacgtccactgtgcctgcggcctccaacgccaccgtgccggaag 121
            |||||||||||||||    |||||||| ||||||| |||||| |  |||||||| |||||
Sbjct: 1416 ctgcctcagcctgacgtctgtccactgcgcctgcgccctccacccgcaccgtgctggaag 1475
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>dbj|AK066897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091C24, full
            insert sequence
          Length = 1704

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 88/102 (86%)
 Strand = Plus / Plus

                                                                        
Query: 2    ctgcgactccttcccgtcgctccacacctgcccagacaggcactccctcatcatcagcgg 61
            |||||||||||||||| | |||||||| ||||| |  ||||||||||| |||||||| ||
Sbjct: 1288 ctgcgactccttcccggccctccacacttgccctgggaggcactccctgatcatcagtgg 1347

                                                      
Query: 62   ctgcctcagcctgactaacgtccactgtgcctgcggcctcca 103
            |||||||||||||||    |||||||| ||||||| ||||||
Sbjct: 1348 ctgcctcagcctgacgtctgtccactgcgcctgcgccctcca 1389
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>gb|AY104259.1| Zea mays PCO067008 mRNA sequence
          Length = 1480

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                        
Query: 3    tgcgactccttcccgtcgctccacacctgcccagacaggcactccctcatcatcagcggc 62
            |||||||| |||||| |||| ||||| ||||| ||  ||||||| |||| ||||||||| 
Sbjct: 1121 tgcgactcgttcccggcgctgcacacgtgcccggagcggcactcgctcaacatcagcggg 1180

                       
Query: 63   tgcctcagcct 73
            |||||||||||
Sbjct: 1181 tgcctcagcct 1191
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>emb|BX510990.32| Zebrafish DNA sequence from clone CH211-67F13 in linkage group 13,
             complete sequence
          Length = 210138

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 42    cactccctcatcatcagcggct 63
             ||||||||||||||||||||||
Sbjct: 30219 cactccctcatcatcagcggct 30198
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>gb|AC140196.3| Mus musculus BAC clone RP24-267C3 from chromosome 7, complete
            sequence
          Length = 183537

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  actattgtatcatgaggact 302
            ||||||||||||||||||||
Sbjct: 6641 actattgtatcatgaggact 6622
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>gb|AC124190.4| Mus musculus BAC clone RP23-267M9 from 3, complete sequence
          Length = 167681

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    cgctccacacctgcccagac 38
             ||||||||||||||||||||
Sbjct: 50153 cgctccacacctgcccagac 50172
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>gb|AC098745.4| Mus musculus BAC clone RP23-122P16 from 18, complete sequence
          Length = 213331

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 284    ctattgtatcatgaggactc 303
              ||||||||||||||||||||
Sbjct: 114691 ctattgtatcatgaggactc 114672
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 304     tgacgcggccatggagcggc 323
               ||||||||||||||||||||
Sbjct: 2212649 tgacgcggccatggagcggc 2212668
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>gb|AC182752.1| Gasterosteus aculeatus clone VMRC26-161K14, complete sequence
          Length = 162574

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 78    aacgtccactgtgcctgcggcctc 101
             |||| |||||||||||||||||||
Sbjct: 85270 aacggccactgtgcctgcggcctc 85293
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>dbj|AK018305.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:6530401A10 product:latexin, full
           insert sequence
          Length = 1412

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 19  cgctccacacctgcccagac 38
           ||||||||||||||||||||
Sbjct: 371 cgctccacacctgcccagac 352
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 28      cctgcccagacaggcactcc 47
               ||||||||||||||||||||
Sbjct: 1071946 cctgcccagacaggcactcc 1071927
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>gb|AC108818.11| Mus musculus chromosome 7, clone RP23-474B17, complete sequence
          Length = 180498

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 283   actattgtatcatgaggact 302
             ||||||||||||||||||||
Sbjct: 98906 actattgtatcatgaggact 98925


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,296,911
Number of Sequences: 3902068
Number of extensions: 4296911
Number of successful extensions: 56776
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56635
Number of HSP's gapped (non-prelim): 140
length of query: 446
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 424
effective length of database: 17,147,199,772
effective search space: 7270412703328
effective search space used: 7270412703328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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