ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27b19 |
|---|---|
| Clone Library Name | barley_pub |
>MRAW_CLOTE (Q894B4) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 310 Score = 33.9 bits (76), Expect = 0.28 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +2 Query: 395 GEHPGLIRRGVPRLLRQQGPHPARRAVQ 478 GE +I+R +P R++GPHPA+R Q Sbjct: 180 GELVDIIKRAIPAKFRREGPHPAKRTFQ 207
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 32.3 bits (72), Expect = 0.80 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 5/54 (9%) Frame = +2 Query: 362 PGEDHRLHRQPGEHPGLIRRGVPRLLRQQGP----HPARR-AVQHPDRLLRGPA 508 P H H PG PG + GV R++GP PAR A+ H R PA Sbjct: 2218 PHHHHHHHHHPGRGPGRVSPGVSARRRRRGPVARVRPARAPALAHARARARAPA 2271
>MRAW_CLOAB (Q97H81) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 312 Score = 30.8 bits (68), Expect = 2.3 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +2 Query: 410 LIRRGVPRLLRQQGPHPARRAVQ 478 +I+ +P R+QGPHPA+R Q Sbjct: 185 IIKAAIPAKFRRQGPHPAKRTFQ 207
>OXAA_BRAJA (Q89BQ0) Inner membrane protein oxaA| Length = 616 Score = 30.4 bits (67), Expect = 3.0 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%) Frame = +3 Query: 27 LCLYYFQEFFGRMGSKVLLVT----LLLMGIASQSYAT 128 L L +F FFG G +LLVT LL +A++SYA+ Sbjct: 380 LGLDFFYRFFGNFGISILLVTVIVKLLFFPLANKSYAS 417
>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and| gyrB (ORF 3) Length = 437 Score = 30.0 bits (66), Expect = 4.0 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 7/46 (15%) Frame = +2 Query: 353 EGAPGEDHRLHRQPGEHPGLIRR-------GVPRLLRQQGPHPARR 469 +GAP H L R+ G H G R GV LRQQ HP R Sbjct: 97 DGAPRRRHLLRRRVGGHRGRNRHAGDRRAPGVDSRLRQQHQHPRGR 142
>MRAW_STAHJ (Q4L5N0) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 311 Score = 29.6 bits (65), Expect = 5.2 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%) Frame = +2 Query: 368 EDHRLHRQPGEHP----GLIRRGVPRLLRQQGPHPARRAVQ 478 E HR H QP E +I+ G+P R++G HPA+R Q Sbjct: 168 ETHREH-QPIETTLELVDIIKEGIPAKARRKGGHPAKRVFQ 207
>MRAW_CLOPE (Q8XJ96) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 310 Score = 29.3 bits (64), Expect = 6.8 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +2 Query: 410 LIRRGVPRLLRQQGPHPARRAVQ 478 +I+ +P R++GPHPA+R Q Sbjct: 185 IIKAAIPAKARREGPHPAKRTFQ 207
>MRAW_BACHK (Q6HEP6) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 310 Score = 29.3 bits (64), Expect = 6.8 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 395 GEHPGLIRRGVPRLLRQQGPHPARRAVQ 478 GE LI+ G+P R+ G HPA+R Q Sbjct: 180 GELVELIKEGIPAPARRTGGHPAKRVFQ 207
>MRAW_BACCZ (Q636A8) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 310 Score = 29.3 bits (64), Expect = 6.8 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 395 GEHPGLIRRGVPRLLRQQGPHPARRAVQ 478 GE LI+ G+P R+ G HPA+R Q Sbjct: 180 GELVELIKEGIPAPARRTGGHPAKRVFQ 207
>MRAW_BACCR (Q819P8) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 310 Score = 29.3 bits (64), Expect = 6.8 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 395 GEHPGLIRRGVPRLLRQQGPHPARRAVQ 478 GE LI+ G+P R+ G HPA+R Q Sbjct: 180 GELVELIKEGIPAPARRTGGHPAKRVFQ 207
>MRAW_BACC1 (P62468) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 310 Score = 29.3 bits (64), Expect = 6.8 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 395 GEHPGLIRRGVPRLLRQQGPHPARRAVQ 478 GE LI+ G+P R+ G HPA+R Q Sbjct: 180 GELVELIKEGIPAPARRTGGHPAKRVFQ 207
>MRAW_BACAN (Q81WC3) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 310 Score = 29.3 bits (64), Expect = 6.8 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 395 GEHPGLIRRGVPRLLRQQGPHPARRAVQ 478 GE LI+ G+P R+ G HPA+R Q Sbjct: 180 GELVELIKEGIPAPARRTGGHPAKRVFQ 207
>MRAW_THEFY (Q47QX7) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 330 Score = 29.3 bits (64), Expect = 6.8 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +2 Query: 386 RQPGEHPGLIRRGVPRLLRQQGPHPARRAVQ 478 R G L+R +P R+ G HPA+RA Q Sbjct: 195 RTTGVLADLVRSAIPAAARRSGGHPAKRAFQ 225
>MRAW_THETN (Q8R9F9) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 308 Score = 29.3 bits (64), Expect = 6.8 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +2 Query: 410 LIRRGVPRLLRQQGPHPARRAVQ 478 +I++ +P R+ GPHPA+R Q Sbjct: 184 IIKKAIPASARRTGPHPAKRTFQ 206
>GLND_PSEPF (Q3KHB4) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 900 Score = 28.9 bits (63), Expect = 8.9 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +2 Query: 302 TDANTVDAQPQRILRLLEGAPGEDHRLHRQPGEHPGLIRRGVPRLLR 442 TD +++ P R+ ++ +G R P ++P +I+R VPR L+ Sbjct: 754 TDGDSIGDNPVRVKQIRDGLT----EALRNPADYPTIIQRRVPRQLK 796 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,187,299 Number of Sequences: 219361 Number of extensions: 867716 Number of successful extensions: 3260 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2976 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3251 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
