ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd26m18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK065437.1| Oryza sativa (japonica cultivar-group) cDNA clon... 561 e-156
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 264 3e-67
3dbj|AP005413.2| Oryza sativa (japonica cultivar-group) genomic D... 264 3e-67
4ref|XM_483108.1| Oryza sativa (japonica cultivar-group), mRNA 100 1e-17
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
6dbj|AP004762.3| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
7ref|XM_464507.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.14
8gb|AC141866.11| Medicago truncatula clone mth2-12p22, complete s... 46 0.14
9dbj|AK072970.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.14
10gb|AC122304.4| Mus musculus BAC clone RP23-283G11 from 18, compl... 44 0.54
11gb|AC152166.4| Mus musculus BAC clone RP23-425A3 from chromosome... 42 2.2
12gb|AC122043.4| Mus musculus BAC clone RP24-448C16 from chromosom... 42 2.2
13gb|AE014820.1| Plasmodium falciparum 3D7 chromosome 14 section 5... 42 2.2
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
15dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
16dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
17dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
18dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
19gb|AY106203.1| Zea mays PCO091513 mRNA sequence 42 2.2
20emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 42 2.2
21dbj|AP002469.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 2.2
22dbj|AP003042.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 2.2
23emb|AL928791.10| Mouse DNA sequence from clone RP23-65N20 on chr... 42 2.2
24gb|AC130535.4| Mus musculus BAC clone RP23-326O2 from 5, complet... 42 2.2
25ref|XM_587667.2| PREDICTED: Bos taurus hypothetical LOC510523 (L... 40 8.5
26gb|AF025465.1| Caenorhabditis elegans cosmid K02E7, complete seq... 40 8.5
27gb|AC126805.4| Mus musculus BAC clone RP23-109A15 from 13, compl... 40 8.5
28ref|XM_720464.1| Plasmodium yoelii yoelii str. 17XNL eukaryotic ... 40 8.5
29gb|AC115737.9| Mus musculus chromosome 3, clone RP23-473G18, com... 40 8.5
30gb|AC007953.21| Homo sapiens 3 BAC RP11-2L8 (Roswell Park Cancer... 40 8.5
31gb|AC009271.7| Homo sapiens chromosome 18, clone CTD-2008L17, co... 40 8.5
32ref|NM_143379.2| Drosophila melanogaster CG1647-RA (CG1647), mRNA 40 8.5
33gb|AC103549.6| Homo sapiens 3 BAC RP11-795G18 (Roswell Park Canc... 40 8.5
34gb|AY075402.1| Drosophila melanogaster LD30287 full length cDNA 40 8.5
35gb|AC026007.7| Homo sapiens chromosome 18, clone RP11-554G9, com... 40 8.5
36gb|AC016165.11| Homo sapiens chromosome 18, clone RP11-450M22, c... 40 8.5
37emb|BX572079.7| Zebrafish DNA sequence from clone DKEY-35L8 in l... 40 8.5
38gb|AC006170.11|AC006170 Drosophila melanogaster, chromosome 3R, ... 40 8.5
39gb|AY107711.1| Zea mays PCO111767 mRNA sequence 40 8.5
40gb|AE003767.2| Drosophila melanogaster chromosome 3R, section 10... 40 8.5
41gb|AC079446.30| Mus musculus strain C57BL/6J chromosome X clone ... 40 8.5
42gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 8.5
43emb|AL672268.18| Mouse DNA sequence from clone RP23-171J18 on ch... 40 8.5 
>dbj|AK065437.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023P15, full
            insert sequence
          Length = 4208

 Score =  561 bits (283), Expect = e-156
 Identities = 508/583 (87%)
 Strand = Plus / Plus

                                                                        
Query: 42   agaatccgactggaaactagcatttcgaatctttggaaattttactgttgtatcctcagt 101
            |||||| || |||||||||||||| || || ||||||||||||||||||||||||||| |
Sbjct: 1988 agaatctgattggaaactagcattccgtatatttggaaattttactgttgtatcctcact 2047

                                                                        
Query: 102  tgttgcgctaatttatgtttttgcacacatcatccttgcaagtcctagtgtaattcaagg 161
             |||||  | |||||||||||| ||||||||||||||||||| || ||| ||||||||||
Sbjct: 2048 ggttgcattcatttatgttttttcacacatcatccttgcaagccccagtataattcaagg 2107

                                                                        
Query: 162  tctcgagttccctggcctagacttgccggattctgttggtgaagttgtggtttgtggagt 221
            ||| ||||| |||||||| ||| | || ||||||||||||||||| ||||||||||||||
Sbjct: 2108 tcttgagtttcctggcctggacctaccagattctgttggtgaagtcgtggtttgtggagt 2167

                                                                        
Query: 222  tcttgttctgcaaggacaacgtgtccttaatatgattgcacggtttgtccaggcaaggag 281
            |||||||||||||||||| |||||||| |||||||||||||| ||  ||||||| | |||
Sbjct: 2168 tcttgttctgcaaggacagcgtgtcctaaatatgattgcacgattcatccaggctaagag 2227

                                                                        
Query: 282  gcaaagaggcggtgatcatggtgtcaaagcaaaaggcgatggctggttgctgactgttgc 341
            ||| |||||  |||||||||| ||||||||| ||||  |||| |||||||||||||| ||
Sbjct: 2228 gcagagaggaagtgatcatggagtcaaagcacaagggaatggttggttgctgactgtcgc 2287

                                                                        
Query: 342  tttgatagatgggaccaacttagcagcaacaaagtcatcgggttactctgatccatatgt 401
            | |||| ||||| ||||| ||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 2288 tctgattgatggtaccaatttagcagcaaccaaatcatctggttactctgatccatatgt 2347

                                                                        
Query: 402  tgtatttacttgcaatggacagacaaagacaagttcgattaagtttcacactcttgagcc 461
            ||||||||| ||||||||| |||| ||||| ||||| ||||| ||||||||||| || ||
Sbjct: 2348 tgtatttacctgcaatggaaagacgaagactagttcaattaaatttcacactctggaacc 2407

                                                                        
Query: 462  tcagtggaatgaaattttcgaatttgatgccatggaagacccaccctcggtgatggaaat 521
            || ||||||||||||||| |||||||||||||||||||| || || || || ||| ||||
Sbjct: 2408 tcggtggaatgaaatttttgaatttgatgccatggaagatcctccatccgttatgaaaat 2467

                                                                        
Query: 522  aaacgtatatgattttgatggaccttttgatgaagttgcctcccttggtcacgttgaaat 581
            ||| || || |||||||||||||| |||||||||||||  || |||||||| | |||| |
Sbjct: 2468 aaatgtctacgattttgatggaccatttgatgaagttgagtctcttggtcatgctgaagt 2527

                                                       
Query: 582  aaatttcttgaaatatagtatatctgagcttgccgacatttgg 624
            |||||||||||||| || | |||| |||||| |||||||||||
Sbjct: 2528 aaatttcttgaaatctaatctatccgagctttccgacatttgg 2570
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  264 bits (133), Expect = 3e-67
 Identities = 220/249 (88%)
 Strand = Plus / Plus

                                                                            
Query: 42       agaatccgactggaaactagcatttcgaatctttggaaattttactgttgtatcctcagt 101
                |||||| || |||||||||||||| || || ||||||||||||||||||||||||||| |
Sbjct: 10892094 agaatctgattggaaactagcattccgtatatttggaaattttactgttgtatcctcact 10892153

                                                                            
Query: 102      tgttgcgctaatttatgtttttgcacacatcatccttgcaagtcctagtgtaattcaagg 161
                 |||||  | |||||||||||| ||||||||||||||||||| || ||| ||||||||||
Sbjct: 10892154 ggttgcattcatttatgttttttcacacatcatccttgcaagccccagtataattcaagg 10892213

                                                                            
Query: 162      tctcgagttccctggcctagacttgccggattctgttggtgaagttgtggtttgtggagt 221
                ||| ||||| |||||||| ||| | || ||||||||||||||||| ||||||||||||||
Sbjct: 10892214 tcttgagtttcctggcctggacctaccagattctgttggtgaagtcgtggtttgtggagt 10892273

                                                                            
Query: 222      tcttgttctgcaaggacaacgtgtccttaatatgattgcacggtttgtccaggcaaggag 281
                |||||||||||||||||| |||||||| |||||||||||||| ||  ||||||| | |||
Sbjct: 10892274 tcttgttctgcaaggacagcgtgtcctaaatatgattgcacgattcatccaggctaagag 10892333

                         
Query: 282      gcaaagagg 290
                ||| |||||
Sbjct: 10892334 gcagagagg 10892342



 Score =  182 bits (92), Expect = 9e-43
 Identities = 158/180 (87%)
 Strand = Plus / Plus

                                                                            
Query: 293      gtgatcatggtgtcaaagcaaaaggcgatggctggttgctgactgttgctttgatagatg 352
                |||||||||| ||||||||| ||||  |||| |||||||||||||| ||| |||| ||||
Sbjct: 10892699 gtgatcatggagtcaaagcacaagggaatggttggttgctgactgtcgctctgattgatg 10892758

                                                                            
Query: 353      ggaccaacttagcagcaacaaagtcatcgggttactctgatccatatgttgtatttactt 412
                | ||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||| |
Sbjct: 10892759 gtaccaatttagcagcaaccaaatcatctggttactctgatccatatgttgtatttacct 10892818

                                                                            
Query: 413      gcaatggacagacaaagacaagttcgattaagtttcacactcttgagcctcagtggaatg 472
                |||||||| |||| ||||| ||||| ||||| ||||||||||| || |||| ||||||||
Sbjct: 10892819 gcaatggaaagacgaagactagttcaattaaatttcacactctggaacctcggtggaatg 10892878



 Score =  129 bits (65), Expect = 1e-26
 Identities = 131/153 (85%)
 Strand = Plus / Plus

                                                                            
Query: 472      gaaattttcgaatttgatgccatggaagacccaccctcggtgatggaaataaacgtatat 531
                |||||||| |||||||||||||||||||| || || || || ||| ||||||| || || 
Sbjct: 10892969 gaaatttttgaatttgatgccatggaagatcctccatccgttatgaaaataaatgtctac 10893028

                                                                            
Query: 532      gattttgatggaccttttgatgaagttgcctcccttggtcacgttgaaataaatttcttg 591
                |||||||||||||| |||||||||||||  || |||||||| | |||| |||||||||||
Sbjct: 10893029 gattttgatggaccatttgatgaagttgagtctcttggtcatgctgaagtaaatttcttg 10893088

                                                 
Query: 592      aaatatagtatatctgagcttgccgacatttgg 624
                |||| || | |||| |||||| |||||||||||
Sbjct: 10893089 aaatctaatctatccgagctttccgacatttgg 10893121
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>dbj|AP005413.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0055N24
          Length = 142702

 Score =  264 bits (133), Expect = 3e-67
 Identities = 220/249 (88%)
 Strand = Plus / Plus

                                                                          
Query: 42     agaatccgactggaaactagcatttcgaatctttggaaattttactgttgtatcctcagt 101
              |||||| || |||||||||||||| || || ||||||||||||||||||||||||||| |
Sbjct: 118460 agaatctgattggaaactagcattccgtatatttggaaattttactgttgtatcctcact 118519

                                                                          
Query: 102    tgttgcgctaatttatgtttttgcacacatcatccttgcaagtcctagtgtaattcaagg 161
               |||||  | |||||||||||| ||||||||||||||||||| || ||| ||||||||||
Sbjct: 118520 ggttgcattcatttatgttttttcacacatcatccttgcaagccccagtataattcaagg 118579

                                                                          
Query: 162    tctcgagttccctggcctagacttgccggattctgttggtgaagttgtggtttgtggagt 221
              ||| ||||| |||||||| ||| | || ||||||||||||||||| ||||||||||||||
Sbjct: 118580 tcttgagtttcctggcctggacctaccagattctgttggtgaagtcgtggtttgtggagt 118639

                                                                          
Query: 222    tcttgttctgcaaggacaacgtgtccttaatatgattgcacggtttgtccaggcaaggag 281
              |||||||||||||||||| |||||||| |||||||||||||| ||  ||||||| | |||
Sbjct: 118640 tcttgttctgcaaggacagcgtgtcctaaatatgattgcacgattcatccaggctaagag 118699

                       
Query: 282    gcaaagagg 290
              ||| |||||
Sbjct: 118700 gcagagagg 118708



 Score =  182 bits (92), Expect = 9e-43
 Identities = 158/180 (87%)
 Strand = Plus / Plus

                                                                          
Query: 293    gtgatcatggtgtcaaagcaaaaggcgatggctggttgctgactgttgctttgatagatg 352
              |||||||||| ||||||||| ||||  |||| |||||||||||||| ||| |||| ||||
Sbjct: 119065 gtgatcatggagtcaaagcacaagggaatggttggttgctgactgtcgctctgattgatg 119124

                                                                          
Query: 353    ggaccaacttagcagcaacaaagtcatcgggttactctgatccatatgttgtatttactt 412
              | ||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||| |
Sbjct: 119125 gtaccaatttagcagcaaccaaatcatctggttactctgatccatatgttgtatttacct 119184

                                                                          
Query: 413    gcaatggacagacaaagacaagttcgattaagtttcacactcttgagcctcagtggaatg 472
              |||||||| |||| ||||| ||||| ||||| ||||||||||| || |||| ||||||||
Sbjct: 119185 gcaatggaaagacgaagactagttcaattaaatttcacactctggaacctcggtggaatg 119244



 Score =  129 bits (65), Expect = 1e-26
 Identities = 131/153 (85%)
 Strand = Plus / Plus

                                                                          
Query: 472    gaaattttcgaatttgatgccatggaagacccaccctcggtgatggaaataaacgtatat 531
              |||||||| |||||||||||||||||||| || || || || ||| ||||||| || || 
Sbjct: 119335 gaaatttttgaatttgatgccatggaagatcctccatccgttatgaaaataaatgtctac 119394

                                                                          
Query: 532    gattttgatggaccttttgatgaagttgcctcccttggtcacgttgaaataaatttcttg 591
              |||||||||||||| |||||||||||||  || |||||||| | |||| |||||||||||
Sbjct: 119395 gattttgatggaccatttgatgaagttgagtctcttggtcatgctgaagtaaatttcttg 119454

                                               
Query: 592    aaatatagtatatctgagcttgccgacatttgg 624
              |||| || | |||| |||||| |||||||||||
Sbjct: 119455 aaatctaatctatccgagctttccgacatttgg 119487
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>ref|XM_483108.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3246

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 149/182 (81%)
 Strand = Plus / Plus

                                                                        
Query: 388  tctgatccatatgttgtatttacttgcaatggacagacaaagacaagttcgattaagttt 447
            |||||||| ||||| |||||||||||||| ||  | |  || ||||| || || ||||| 
Sbjct: 1825 tctgatccttatgtggtatttacttgcaacggtaaaagtaaaacaagctcaatcaagttc 1884

                                                                        
Query: 448  cacactcttgagcctcagtggaatgaaattttcgaatttgatgccatggaagacccaccc 507
            || || || || |||||||||||||| || || ||||||||||||||||| || ||||| 
Sbjct: 1885 caaacactggaacctcagtggaatgacatctttgaatttgatgccatggatgatccacca 1944

                                                                        
Query: 508  tcggtgatggaaataaacgtatatgattttgatggaccttttgatgaagttgcctccctt 567
            || |||||| |  || | |||||||||||||||||||| ||||| |||||| |||| |||
Sbjct: 1945 tcagtgatgaatgtacatgtatatgattttgatggaccatttgacgaagttacctcactt 2004

              
Query: 568  gg 569
            ||
Sbjct: 2005 gg 2006



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                   
Query: 292  ggtgatcatggtgtcaaagcaaaaggcgatggctggttg 330
            ||||||||||||||||| ||| |||| ||||| ||||||
Sbjct: 1729 ggtgatcatggtgtcaaggcacaaggtgatggatggttg 1767
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                            
Query: 481      gaatttgatgccatggaagacccaccctcggtgatggaaataaacgtatatgattttgat 540
                ||||||||||||||||| || ||||| || |||||| |  || | |||||||||||||||
Sbjct: 24322155 gaatttgatgccatggatgatccaccatcagtgatgaatgtacatgtatatgattttgat 24322214

                                             
Query: 541      ggaccttttgatgaagttgcctcccttgg 569
                ||||| ||||| |||||| |||| |||||
Sbjct: 24322215 ggaccatttgacgaagttacctcacttgg 24322243



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 292      ggtgatcatggtgtcaaagcaaaaggcgatggctggttg 330
                ||||||||||||||||| ||| |||| ||||| ||||||
Sbjct: 24321821 ggtgatcatggtgtcaaggcacaaggtgatggatggttg 24321859



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 388      tctgatccatatgttgtatttacttgcaa 416
                |||||||| ||||| ||||||||||||||
Sbjct: 24321917 tctgatccttatgtggtatttacttgcaa 24321945
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>dbj|AP004762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0686H11
          Length = 135273

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                         
Query: 481   gaatttgatgccatggaagacccaccctcggtgatggaaataaacgtatatgattttgat 540
             ||||||||||||||||| || ||||| || |||||| |  || | |||||||||||||||
Sbjct: 62459 gaatttgatgccatggatgatccaccatcagtgatgaatgtacatgtatatgattttgat 62518

                                          
Query: 541   ggaccttttgatgaagttgcctcccttgg 569
             ||||| ||||| |||||| |||| |||||
Sbjct: 62519 ggaccatttgacgaagttacctcacttgg 62547



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 292   ggtgatcatggtgtcaaagcaaaaggcgatggctggttg 330
             ||||||||||||||||| ||| |||| ||||| ||||||
Sbjct: 62125 ggtgatcatggtgtcaaggcacaaggtgatggatggttg 62163



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 388   tctgatccatatgttgtatttacttgcaa 416
             |||||||| ||||| ||||||||||||||
Sbjct: 62221 tctgatccttatgtggtatttacttgcaa 62249
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>ref|XM_464507.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3710

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                       
Query: 283  caaagaggcggtgatcatggtgtcaaagcaaaaggcgatggctggttgctgactgttgc 341
            ||||||||  |||||||||| || |||||  | || ||||| |||||||||||||||||
Sbjct: 1917 caaagaggtagtgatcatggggtgaaagctcatggtgatggttggttgctgactgttgc 1975
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>gb|AC141866.11| Medicago truncatula clone mth2-12p22, complete sequence
          Length = 126907

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 385   tactctgatccatatgttgtatttacttgcaatgg 419
             |||||||| |||||||| || ||||||||||||||
Sbjct: 91087 tactctgacccatatgtggtgtttacttgcaatgg 91121
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>dbj|AK072970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144C18, full
            insert sequence
          Length = 3710

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                       
Query: 283  caaagaggcggtgatcatggtgtcaaagcaaaaggcgatggctggttgctgactgttgc 341
            ||||||||  |||||||||| || |||||  | || ||||| |||||||||||||||||
Sbjct: 1917 caaagaggtagtgatcatggggtgaaagctcatggtgatggttggttgctgactgttgc 1975
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>gb|AC122304.4| Mus musculus BAC clone RP23-283G11 from 18, complete sequence
          Length = 184090

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 391    gatccatatgttgtatttactt 412
              ||||||||||||||||||||||
Sbjct: 110709 gatccatatgttgtatttactt 110730
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>gb|AC152166.4| Mus musculus BAC clone RP23-425A3 from chromosome 7, complete sequence
          Length = 216652

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 258    tgcacggtttgtccaggcaaggagg 282
              |||| ||||||||||||||||||||
Sbjct: 169537 tgcagggtttgtccaggcaaggagg 169561
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>gb|AC122043.4| Mus musculus BAC clone RP24-448C16 from chromosome 5, complete sequence
          Length = 187106

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 548   ttgatgaagttgcctcccttg 568
             |||||||||||||||||||||
Sbjct: 24942 ttgatgaagttgcctcccttg 24962
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>gb|AE014820.1| Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete
              sequence
          Length = 250029

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 565    cttggtcacgttgaaataaat 585
              |||||||||||||||||||||
Sbjct: 157435 cttggtcacgttgaaataaat 157455
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                                
Query: 293     gtgatcatggtgtcaaagcaaaaggcgatggctggttgctgactgttgc 341
               |||||||||| || |||||  | || ||||| |||||||||||||||||
Sbjct: 5590830 gtgatcatggggtgaaagctcatggtgatggttggttgctgactgttgc 5590782
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 580      ataaatttcttgaaatatagt 600
                |||||||||||||||||||||
Sbjct: 42691850 ataaatttcttgaaatatagt 42691870
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>dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1656_A11
          Length = 148887

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 580   ataaatttcttgaaatatagt 600
             |||||||||||||||||||||
Sbjct: 24615 ataaatttcttgaaatatagt 24635
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>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0026H03
          Length = 151827

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                               
Query: 293    gtgatcatggtgtcaaagcaaaaggcgatggctggttgctgactgttgc 341
              |||||||||| || |||||  | || ||||| |||||||||||||||||
Sbjct: 135565 gtgatcatggggtgaaagctcatggtgatggttggttgctgactgttgc 135517
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>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419A09
          Length = 168064

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                              
Query: 293   gtgatcatggtgtcaaagcaaaaggcgatggctggttgctgactgttgc 341
             |||||||||| || |||||  | || ||||| |||||||||||||||||
Sbjct: 18566 gtgatcatggggtgaaagctcatggtgatggttggttgctgactgttgc 18518
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>gb|AY106203.1| Zea mays PCO091513 mRNA sequence
          Length = 1430

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 168  gttccctggcctagacttgcc 188
            |||||||||||||||||||||
Sbjct: 1071 gttccctggcctagacttgcc 1091
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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 361     ttagcagcaacaaagtcatcg 381
               |||||||||||||||||||||
Sbjct: 2563925 ttagcagcaacaaagtcatcg 2563945
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>dbj|AP002469.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-266E8, complete
             sequence
          Length = 158977

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 576   tgaaataaatttcttgaaata 596
             |||||||||||||||||||||
Sbjct: 19195 tgaaataaatttcttgaaata 19215
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>dbj|AP003042.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-164B14, complete
              sequence
          Length = 111864

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 576    tgaaataaatttcttgaaata 596
              |||||||||||||||||||||
Sbjct: 104800 tgaaataaatttcttgaaata 104820
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>emb|AL928791.10| Mouse DNA sequence from clone RP23-65N20 on chromosome 2, complete
              sequence
          Length = 210148

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 124    gcacacatcatccttgcaagt 144
              |||||||||||||||||||||
Sbjct: 135817 gcacacatcatccttgcaagt 135797
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>gb|AC130535.4| Mus musculus BAC clone RP23-326O2 from 5, complete sequence
          Length = 193752

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 548    ttgatgaagttgcctcccttg 568
              |||||||||||||||||||||
Sbjct: 184789 ttgatgaagttgcctcccttg 184809
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>ref|XM_587667.2| PREDICTED: Bos taurus hypothetical LOC510523 (LOC510523), mRNA
          Length = 822

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 495 ggaagacccaccctcggtgatggaaata 522
           ||||||| ||||||| ||||||||||||
Sbjct: 345 ggaagacacaccctctgtgatggaaata 372
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>gb|AF025465.1| Caenorhabditis elegans cosmid K02E7, complete sequence
          Length = 36535

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   ttttcgaatttgatgccatg 495
             ||||||||||||||||||||
Sbjct: 16249 ttttcgaatttgatgccatg 16230
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>gb|AC126805.4| Mus musculus BAC clone RP23-109A15 from 13, complete sequence
          Length = 177083

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 396    atatgttgtatttacttgcaatgg 419
              ||||||||||||||| ||||||||
Sbjct: 142327 atatgttgtatttacctgcaatgg 142350
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>ref|XM_720464.1| Plasmodium yoelii yoelii str. 17XNL eukaryotic translation
           initiation factor 3 39 kDa subunit (PY00595) partial
           mRNA
          Length = 984

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 471 tgaaattttcgaatttgatg 490
           ||||||||||||||||||||
Sbjct: 542 tgaaattttcgaatttgatg 523
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>gb|AC115737.9| Mus musculus chromosome 3, clone RP23-473G18, complete sequence
          Length = 179034

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 409    acttgcaatggacagacaaa 428
              ||||||||||||||||||||
Sbjct: 138157 acttgcaatggacagacaaa 138138
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>gb|AC007953.21| Homo sapiens 3 BAC RP11-2L8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152210

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    tttactgttgtatcctcagt 101
             ||||||||||||||||||||
Sbjct: 87006 tttactgttgtatcctcagt 87025
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>gb|AC009271.7| Homo sapiens chromosome 18, clone CTD-2008L17, complete sequence
          Length = 128119

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 71    tctttggaaattttactgttgtat 94
             ||||||| ||||||||||||||||
Sbjct: 85962 tctttggcaattttactgttgtat 85985
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>ref|NM_143379.2| Drosophila melanogaster CG1647-RA (CG1647), mRNA
          Length = 4050

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 31   caaccggaaacagaatccga 50
            ||||||||||||||||||||
Sbjct: 1605 caaccggaaacagaatccga 1624
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>gb|AC103549.6| Homo sapiens 3 BAC RP11-795G18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165139

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     tttactgttgtatcctcagt 101
              ||||||||||||||||||||
Sbjct: 127619 tttactgttgtatcctcagt 127600
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>gb|AY075402.1| Drosophila melanogaster LD30287 full length cDNA
          Length = 1826

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 31   caaccggaaacagaatccga 50
            ||||||||||||||||||||
Sbjct: 1586 caaccggaaacagaatccga 1605
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>gb|AC026007.7| Homo sapiens chromosome 18, clone RP11-554G9, complete sequence
          Length = 152407

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 71    tctttggaaattttactgttgtat 94
             ||||||| ||||||||||||||||
Sbjct: 30585 tctttggcaattttactgttgtat 30562
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>gb|AC016165.11| Homo sapiens chromosome 18, clone RP11-450M22, complete sequence
          Length = 166511

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 71     tctttggaaattttactgttgtat 94
              ||||||| ||||||||||||||||
Sbjct: 109122 tctttggcaattttactgttgtat 109099
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>emb|BX572079.7| Zebrafish DNA sequence from clone DKEY-35L8 in linkage group 15, complete
              sequence
          Length = 192849

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 302    gtgtcaaagcaaaaggcgatggctggtt 329
              |||||||||||| |||| ||||||||||
Sbjct: 146419 gtgtcaaagcaacaggctatggctggtt 146446
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>gb|AC006170.11|AC006170 Drosophila melanogaster, chromosome 3R, region 98E2-98F2, BAC clone
             BACR48K07, complete sequence
          Length = 168471

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    caaccggaaacagaatccga 50
             ||||||||||||||||||||
Sbjct: 37705 caaccggaaacagaatccga 37724
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>gb|AY107711.1| Zea mays PCO111767 mRNA sequence
          Length = 810

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 2  cggcacgaggtgaaagcttg 21
          ||||||||||||||||||||
Sbjct: 40 cggcacgaggtgaaagcttg 59
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>gb|AE003767.2| Drosophila melanogaster chromosome 3R, section 105 of 118 of the
             complete sequence
          Length = 231562

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    caaccggaaacagaatccga 50
             ||||||||||||||||||||
Sbjct: 20806 caaccggaaacagaatccga 20825
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>gb|AC079446.30| Mus musculus strain C57BL/6J chromosome X clone rp23-9p22, complete
              sequence
          Length = 223309

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 554    aagttgcctcccttggtcac 573
              ||||||||||||||||||||
Sbjct: 192453 aagttgcctcccttggtcac 192434
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 194     ctgttggtgaagttgtggtttgtg 217
               ||||||||| ||||||||||||||
Sbjct: 4469074 ctgttggtgcagttgtggtttgtg 4469097
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>emb|AL672268.18| Mouse DNA sequence from clone RP23-171J18 on chromosome X, complete
             sequence
          Length = 187999

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 554   aagttgcctcccttggtcac 573
             ||||||||||||||||||||
Sbjct: 66737 aagttgcctcccttggtcac 66718


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,946,936
Number of Sequences: 3902068
Number of extensions: 5946936
Number of successful extensions: 111141
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110902
Number of HSP's gapped (non-prelim): 239
length of query: 624
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 601
effective length of database: 17,143,297,704
effective search space: 10303121920104
effective search space used: 10303121920104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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