ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26m15 |
|---|---|
| Clone Library Name | barley_pub |
>PLZ12_LUPPO (P16148) Protein PPLZ12| Length = 184 Score = 153 bits (386), Expect = 5e-37 Identities = 72/111 (64%), Positives = 93/111 (83%) Frame = +1 Query: 133 KAEAEKIVQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDM 312 K EAEKI+Q+KRAE EAEAKYL G+G+ARQRQAI DGLR+++L F+ V GT+AK+VMD+ Sbjct: 66 KGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGTSAKEVMDL 125 Query: 313 VLITQYFDTMKEIGASSKSSAVFIPHGPGAVRDIATQIRDGLLQGQSASDN 465 ++ITQYFDT+K++G SSK++ VFIPHGPG VRDI QIR+GL++ A N Sbjct: 126 IMITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDIGEQIRNGLMESARAGIN 176
>YBBK_SHIFL (P0AA56) Hypothetical protein ybbK| Length = 305 Score = 40.0 bits (92), Expect = 0.006 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 4/104 (3%) Frame = +1 Query: 133 KAEAEKIVQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDM 312 KAE EK QI +AEGE ++ +L AR+R A + ++ A+ A ++ Sbjct: 199 KAEGEKQSQILKAEGERQSAFLQ--AEARERSAEAEARATKMVSEAIASGDIQA---VNY 253 Query: 313 VLITQYFDTMKEIGASSKSSAVFIPHGP----GAVRDIATQIRD 432 + +Y + +++IG+SS S V +P G++ IA ++D Sbjct: 254 FVAQKYTEALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELVKD 297
>YBBK_ECOLI (P0AA53) Hypothetical protein ybbK| Length = 305 Score = 40.0 bits (92), Expect = 0.006 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 4/104 (3%) Frame = +1 Query: 133 KAEAEKIVQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDM 312 KAE EK QI +AEGE ++ +L AR+R A + ++ A+ A ++ Sbjct: 199 KAEGEKQSQILKAEGERQSAFLQ--AEARERSAEAEARATKMVSEAIASGDIQA---VNY 253 Query: 313 VLITQYFDTMKEIGASSKSSAVFIPHGP----GAVRDIATQIRD 432 + +Y + +++IG+SS S V +P G++ IA ++D Sbjct: 254 FVAQKYTEALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELVKD 297
>YBBK_ECOL6 (P0AA54) Hypothetical protein ybbK| Length = 305 Score = 40.0 bits (92), Expect = 0.006 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 4/104 (3%) Frame = +1 Query: 133 KAEAEKIVQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDM 312 KAE EK QI +AEGE ++ +L AR+R A + ++ A+ A ++ Sbjct: 199 KAEGEKQSQILKAEGERQSAFLQ--AEARERSAEAEARATKMVSEAIASGDIQA---VNY 253 Query: 313 VLITQYFDTMKEIGASSKSSAVFIPHGP----GAVRDIATQIRD 432 + +Y + +++IG+SS S V +P G++ IA ++D Sbjct: 254 FVAQKYTEALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELVKD 297
>YBBK_ECO57 (P0AA55) Hypothetical protein ybbK| Length = 305 Score = 40.0 bits (92), Expect = 0.006 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 4/104 (3%) Frame = +1 Query: 133 KAEAEKIVQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDM 312 KAE EK QI +AEGE ++ +L AR+R A + ++ A+ A ++ Sbjct: 199 KAEGEKQSQILKAEGERQSAFLQ--AEARERSAEAEARATKMVSEAIASGDIQA---VNY 253 Query: 313 VLITQYFDTMKEIGASSKSSAVFIPHGP----GAVRDIATQIRD 432 + +Y + +++IG+SS S V +P G++ IA ++D Sbjct: 254 FVAQKYTEALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELVKD 297
>INT2_SALTI (P62592) Integrase/recombinase (E2 protein)| Length = 337 Score = 30.8 bits (68), Expect = 3.8 Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 8/71 (11%) Frame = +3 Query: 243 PEGQRPGLRSQC----AW---HHCKGRDGHGADHPILRYYERDRRVLQVLGGVHPPWPWR 401 PE P LR Q AW +GR G + R Y R G PW W Sbjct: 181 PESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPR--------AGHSWPWFWV 232 Query: 402 SARHRH-TDPR 431 A+H H TDPR Sbjct: 233 FAQHTHSTDPR 243
>INT2_PSEAE (P62591) Integrase/recombinase (E2 protein)| Length = 337 Score = 30.8 bits (68), Expect = 3.8 Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 8/71 (11%) Frame = +3 Query: 243 PEGQRPGLRSQC----AW---HHCKGRDGHGADHPILRYYERDRRVLQVLGGVHPPWPWR 401 PE P LR Q AW +GR G + R Y R G PW W Sbjct: 181 PESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPR--------AGHSWPWFWV 232 Query: 402 SARHRH-TDPR 431 A+H H TDPR Sbjct: 233 FAQHTHSTDPR 243
>INT2_ECOLI (P62590) Integrase/recombinase (E2 protein)| Length = 337 Score = 30.8 bits (68), Expect = 3.8 Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 8/71 (11%) Frame = +3 Query: 243 PEGQRPGLRSQC----AW---HHCKGRDGHGADHPILRYYERDRRVLQVLGGVHPPWPWR 401 PE P LR Q AW +GR G + R Y R G PW W Sbjct: 181 PESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPR--------AGHSWPWFWV 232 Query: 402 SARHRH-TDPR 431 A+H H TDPR Sbjct: 233 FAQHTHSTDPR 243
>DHSO_BACHD (Q9Z9U1) Sorbitol dehydrogenase (EC 1.1.1.14) (L-iditol| 2-dehydrogenase) (Glucitol dehydrogenase) Length = 343 Score = 30.4 bits (67), Expect = 5.0 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%) Frame = -2 Query: 456 GRLALKKTVADLCGDVAHCARAMGD----EHRRGLGGRADLFHSIEVLGDQHHVHHV 298 G +T +CG ++C GD HR+GLG + D + V+ Q +HH+ Sbjct: 79 GDRVTSETTYSICGKCSYCTS--GDYNLCSHRKGLGNQQDGSFAKYVIARQESLHHL 133
>RL4_BACHD (Q9Z9L3) 50S ribosomal protein L4| Length = 207 Score = 30.4 bits (67), Expect = 5.0 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Frame = +1 Query: 127 NEKAEAEKIVQIKRAEGEAE-----AKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTT 291 + K +AE+IV ++ EA A LSGL + R+ + D+V A N+PG T Sbjct: 115 SSKVKAEEIVVLESLALEAPKTKEMASILSGLSVDRKALVVTADYNDNVALSARNIPGVT 174
>PUR5_PSEPK (Q88MA9) Phosphoribosylformylglycinamidine cyclo-ligase (EC| 6.3.3.1) (AIRS) (Phosphoribosyl-aminoimidazole synthetase) (AIR synthase) Length = 352 Score = 30.0 bits (66), Expect = 6.6 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = -2 Query: 321 DQHHVHHVLCSGARHIDCEAQDAVPQAIHNGLALAGD 211 D+H +H VL G + C AQD V A+ N L AG+ Sbjct: 291 DEHEMHRVLNCGVGMVICVAQDQVEAAL-NELRAAGE 326
>PO210_MOUSE (Q9QY81) Nuclear pore membrane glycoprotein 210 precursor (POM210)| (Nuclear pore protein gp210) Length = 1886 Score = 29.6 bits (65), Expect = 8.6 Identities = 21/89 (23%), Positives = 40/89 (44%) Frame = -3 Query: 434 PSRICVAMSRTAPGPWGMNTAEDLEDAPISFIVSKYWVISTMSITSFAVVPGTLTAKPRT 255 P + + R PGP+G + D S+ V + + ++ T+ ++ PR Sbjct: 1780 PVTVAFVLDRRGPGPYGASLLSHFLD---SYQVMFFTFFALLAGTAVTIIAYHTVCAPRE 1836 Query: 254 LSLRPSTMAWRWRAIPRPDRYLASASPSA 168 L+ S +A RA P+ + ++SP+A Sbjct: 1837 LA---SPLALTPRASPQHSPHYLASSPAA 1862
>TIP39_HUMAN (Q96A98) Tuberoinfundibular peptide of 39 residues precursor| (TIP39) Length = 100 Score = 29.6 bits (65), Expect = 8.6 Identities = 16/29 (55%), Positives = 17/29 (58%) Frame = -3 Query: 254 LSLRPSTMAWRWRAIPRPDRYLASASPSA 168 LSLRP AW A PRP R LA A +A Sbjct: 42 LSLRPPGRAWADPATPRPRRSLALADDAA 70
>TIP39_BOVIN (P0C171) Tuberoinfundibular peptide of 39 residues precursor| (TIP39) Length = 100 Score = 29.6 bits (65), Expect = 8.6 Identities = 16/29 (55%), Positives = 17/29 (58%) Frame = -3 Query: 254 LSLRPSTMAWRWRAIPRPDRYLASASPSA 168 LSLRP AW A PRP R LA A +A Sbjct: 42 LSLRPPGRAWADPATPRPRRSLALADDAA 70 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,363,450 Number of Sequences: 219361 Number of extensions: 1868302 Number of successful extensions: 5377 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5213 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5368 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
